Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0006459

Physical Location & Seq

Genomic Coordinates Reverse (-)

10305506 .. 10307872

Gene Structure 2367 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g12010.9

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGACTGCAGTCAAGCAGAATTACGGGGAGAGAATTCTTGTTCAGTTTGAAGACTTTGCAAACCACAATGCTTTTGATCTGCTCGCGAAGTATGCCTCAACCCATCTTGTTTTTAATGATGACATTCAGGGGACAGCATCGGTGGTTCTTGCAGGGCTTCTTGCAGCTTTAAAGTTAGTAAAGGGATCCTTATCTGAACACAGATTTTTATTCCTTGGTGCTGGAGAGGCCGGCACTGGCATAGCAGAACTCATAGCCCTTGAAATTTCCAAGCAGACAAATACCCCAGTGGAAGAGACCCGCAAGAATATTTGGCTTGTGGACTCAAAGGGATTGATTGTCAGTTCTCGGTTGGATTCACTCCAACACTTTAAAAAGCCCTGGGCTCATGAACATGAACCAGTCGGGGAACTTGTAGATGCTGTTAAGTCAATCAAGCCAACAGTATTAATTGGAACGTCAGGCGTTGGAAGAACATTCACTAAAGAAGTGGTTGAGGCTATGGCTTCCCTGAATGAGAGACCTATTATTCTCGCTCTTTCCAATCCAACATCACAATCTGAATGTACCGCGGAAGAAGCATATACATGGACTGAGGGTCGTGCCATATATTGTAGTGGAAGCCCATTCCCGCCAGTTGAATATAATGGGAAGGTTTACTATCCTGGCCAGGCAAACAATGCATACATCTTCCCTGGATTCGGTCTGGGTTTAATAATGTCTGGTACTATCCGTGTTCATGACGACATGCTTCTGGCAGCTTCGGAAGCGTTGGCTTCAATGGTGAGCCAGGAAGACTTTGACAAGGGACTCATATACCCTCCATTCACAAACATCAGAAAGATTTCGGCACATATTGCTGCTAAAGTAGCTGCAAAATCATATGAACTTGGTTTGGCCACCCGCCTCCCCGAACCAAGAGATCTAGAGAAGTATGCTGAAAGCTGTATGTACAGCCCTTCCTATCGAAATTTCCGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004470 GO:0004473 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006090 GO:0006108 GO:0006629 GO:0006631 GO:0006633 GO:0008150 GO:0008152 GO:0008270 GO:0008610 GO:0009058 GO:0009507 GO:0009536 GO:0009987 GO:0016043 GO:0016053 GO:0016491 GO:0016614 GO:0016615 GO:0016616 GO:0019752 GO:0022607 GO:0032787 GO:0042802 GO:0042803 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046872 GO:0046914 GO:0046983 GO:0050897 GO:0051259 GO:0051260 GO:0051262 GO:0051289 GO:0055114 GO:0065003 GO:0071704 GO:0071840 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00620 ko00710 ko01100 ko01120 ko01200 map00620 map00710 map01100 map01120 map01200

Pfam Domains

Protein Families

Malic_M malic

Protein Analysis

327

Amino Acids

35.74

Weight (kDa)

5.81

Isoelectric Point (pI)

37.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006459)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79750
fragaria_vesca	FvH4_6g32330 FvH4_6g32330 FvH4_6g32330
malus_domestica	MD09G1203300.v1.1 MD17G1184200.v1.1
prunus_persica	Prupe.3G059400_v2.0.a1 Prupe.3G059400_v2.0.a1 Prupe.3G059400_v2.0.a1
pyrus_communis	pycom09g12010 pycom17g19390
rosa_chinensis	RchiOBHm_Chr2g0140441
rosa_laevigata	RLG00000019867
rosa_multiflora	Rmu_sc0003516.1_g000006
rosa_roxburghii	Rroxscaffold_153G00436750 Rroxscaffold_2G00104830
rosa_rugosa	Rorug02G0362900 Rorug02G0363000 Rorug02G0363100 Rorug02G0363200 Rorug02G0363300
rosa_samantha	Rh2AG413500 Rh2BG423700 Rh2CG399700 Rh2DG433400
rosa_wichuraiana	Rw2G033890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	86, 572
AciI	CCGC	5 cut(s)	301, 570, 572, 632, 904
AclWI	GGATC	2 cut(s)	180, 193
AcoI	YGGCCR	2 cut(s)	667, 897
AcsI	RAATTY	3 cut(s)	33, 264, 970
AfaI	GTAC	3 cut(s)	568, 727, 953
AfiI	CCNNNNNNNGG	1 cut(s)	701
AgsI	TTSAA	4 cut(s)	50, 263, 641, 780
AhdI	GACNNNNNGTC	1 cut(s)	597
AjnI	CCWGG	5 cut(s)	380, 664, 669, 694, 789
AluBI	AGCT	4 cut(s)	167, 761, 872, 945
AluI	AGCT	4 cut(s)	167, 761, 872, 945
Alw26I	GTCTC	2 cut(s)	290, 514
AlwI	GGATC	2 cut(s)	180, 193
AoxI	GGCC	3 cut(s)	228, 667, 897
ApeKI	GCWGC	4 cut(s)	164, 758, 860, 872
ApoI	RAATTY	3 cut(s)	33, 264, 970
AseI	ATTAAT	1 cut(s)	449
Asp700I	GAANNNNTTC	1 cut(s)	844
AsuHPI	GGTGA	1 cut(s)	796
BalI	TGGCCA	2 cut(s)	669, 899
BamHI	GGATCC	1 cut(s)	185
BanII	GRGCYC	1 cut(s)	388
BbsI	GAAGAC	2 cut(s)	57, 801
BbvI	GCAGC	4 cut(s)	176, 770, 847, 859
BccI	CCATC	1 cut(s)	111
BciT130I	CCWGG	5 cut(s)	382, 666, 671, 696, 791
BcoDI	GTCTC	2 cut(s)	290, 514
BfaI	CTAG	1 cut(s)	926
BfmI	CTRYAG	1 cut(s)	6
BglII	AGATCT	1 cut(s)	922
BisI	GCNGC	4 cut(s)	165, 759, 861, 873
BlsI	GCNGC	4 cut(s)	166, 760, 862, 874
Bme1390I	CCNGG	5 cut(s)	382, 666, 671, 696, 791
BmeRI	GACNNNNNGTC	1 cut(s)	597
BmiI	GGNNCC	1 cut(s)	187
BmrFI	CCNGG	5 cut(s)	382, 666, 671, 696, 791
BmrI	ACTGGG	1 cut(s)	281
BmsI	GCATC	2 cut(s)	146, 409
BmuI	ACTGGG	1 cut(s)	281
BoxI	GACNNNNGTC	1 cut(s)	8
BpiI	GAAGAC	2 cut(s)	57, 801
BpmI	CTGGAG	1 cut(s)	243
BsaBI	GATNNNNATC	1 cut(s)	190
BsaI	GGTCTC	2 cut(s)	290, 514
BsaJI	CCNNGG	5 cut(s)	214, 380, 381, 570, 694
BsaWI	WCCGGW	1 cut(s)	975
Bsc4I	CCNNNNNNNGG	1 cut(s)	701
Bse118I	RCCGGY	1 cut(s)	230
Bse1I	ACTGG	4 cut(s)	241, 287, 401, 635
Bse8I	GATNNNNATC	1 cut(s)	190
BseBI	CCWGG	5 cut(s)	382, 666, 671, 696, 791
BseDI	CCNNGG	5 cut(s)	214, 380, 381, 570, 694
BseJI	GATNNNNATC	1 cut(s)	190
BseLI	CCNNNNNNNGG	1 cut(s)	701
BseMII	CTCAG	1 cut(s)	585
BseNI	ACTGG	4 cut(s)	241, 287, 401, 635
BseXI	GCAGC	4 cut(s)	176, 770, 847, 859
Bsh1236I	CGCG	2 cut(s)	86, 572
BshFI	GGCC	3 cut(s)	230, 669, 899
BsiSI	CCGG	2 cut(s)	231, 976
BslFI	GGGAC	2 cut(s)	145, 822
BslI	CCNNNNNNNGG	1 cut(s)	701
BsmAI	GTCTC	2 cut(s)	290, 514
BsmFI	GGGAC	2 cut(s)	145, 822
BsnI	GGCC	3 cut(s)	230, 669, 899
Bso31I	GGTCTC	2 cut(s)	290, 514
Bsp1286I	GDGCHC	1 cut(s)	388
Bsp1407I	TGTACA	1 cut(s)	951
Bsp143I	GATC	3 cut(s)	76, 185, 922
Bsp68I	TCGCGA	1 cut(s)	86
BspACI	CCGC	5 cut(s)	301, 570, 572, 632, 904
BspANI	GGCC	3 cut(s)	230, 669, 899
BspCNI	CTCAG	1 cut(s)	586
BspFNI	CGCG	2 cut(s)	86, 572
BspHI	TCATGA	2 cut(s)	388, 739
BspLI	GGNNCC	1 cut(s)	187
BspMAI	CTGCAG	1 cut(s)	10
BspPI	GGATC	2 cut(s)	180, 193
BspTNI	GGTCTC	2 cut(s)	290, 514
BsrFI	RCCGGY	1 cut(s)	230
BsrGI	TGTACA	1 cut(s)	951
BsrI	ACTGG	4 cut(s)	241, 287, 401, 635
BssAI	RCCGGY	1 cut(s)	230
BssECI	CCNNGG	5 cut(s)	214, 380, 381, 570, 694
BssMI	GATC	3 cut(s)	76, 185, 922
BssT1I	CCWWGG	1 cut(s)	214
Bst2UI	CCWGG	5 cut(s)	382, 666, 671, 696, 791
Bst4CI	ACNGT	1 cut(s)	445
Bst6I	CTCTTC	1 cut(s)	288
BstAPI	GCANNNNNTGC	2 cut(s)	680, 857
BstAUI	TGTACA	1 cut(s)	951
BstC8I	GCNNGC	2 cut(s)	84, 232
BstDEI	CTNAG	1 cut(s)	594
BstDSI	CCRYGG	1 cut(s)	570
BstFNI	CGCG	2 cut(s)	86, 572
BstKTI	GATC	3 cut(s)	79, 188, 925
BstMAI	GTCTC	2 cut(s)	290, 514
BstMBI	GATC	3 cut(s)	76, 185, 922
BstMWI	GCNNNNNNNGC	7 cut(s)	92, 227, 578, 680, 767, 857, 869
BstNI	CCWGG	5 cut(s)	382, 666, 671, 696, 791
BstNSI	RCATGY	1 cut(s)	751
BstPAI	GACNNNNGTC	1 cut(s)	8
BstSCI	CCNGG	5 cut(s)	380, 664, 669, 694, 789
BstSFI	CTRYAG	1 cut(s)	6
BstUI	CGCG	2 cut(s)	86, 572
BstV1I	GCAGC	4 cut(s)	176, 770, 847, 859
BstV2I	GAAGAC	2 cut(s)	57, 801
BstX2I	RGATCY	2 cut(s)	185, 922
BstYI	RGATCY	2 cut(s)	185, 922
BsuRI	GGCC	3 cut(s)	230, 669, 899
BtgI	CCRYGG	1 cut(s)	570
BtsIMutI	CAGTG	2 cut(s)	234, 294
BtuMI	TCGCGA	1 cut(s)	86
Cac8I	GCNNGC	2 cut(s)	84, 232
CciI	TCATGA	2 cut(s)	388, 739
Cfr10I	RCCGGY	1 cut(s)	230
Cfr42I	CCGCGG	1 cut(s)	573
Csp6I	GTAC	3 cut(s)	567, 726, 952
CviAII	CATG	5 cut(s)	389, 395, 588, 740, 748
CviQI	GTAC	3 cut(s)	567, 726, 952
DdeI	CTNAG	1 cut(s)	594
DpnI	GATC	3 cut(s)	78, 187, 924
DpnII	GATC	3 cut(s)	76, 185, 922
DraI	TTTAAA	2 cut(s)	171, 373
DriI	GACNNNNNGTC	1 cut(s)	597
EaeI	YGGCCR	2 cut(s)	667, 897
Eam1104I	CTCTTC	1 cut(s)	288
Eam1105I	GACNNNNNGTC	1 cut(s)	597
EarI	CTCTTC	1 cut(s)	288
Eco130I	CCWWGG	1 cut(s)	214
Eco24I	GRGCYC	1 cut(s)	388
Eco31I	GGTCTC	2 cut(s)	290, 514
EcoRI	GAATTC	1 cut(s)	33
EcoRII	CCWGG	5 cut(s)	380, 664, 669, 694, 789
EcoT14I	CCWWGG	1 cut(s)	214
EcoT22I	ATGCAT	1 cut(s)	685
EcoT38I	GRGCYC	1 cut(s)	388
ErhI	CCWWGG	1 cut(s)	214
FaeI	CATG	5 cut(s)	392, 398, 591, 743, 751
FalI	AAGNNNNNCTT	2 cut(s)	173, 205
FaqI	GGGAC	2 cut(s)	145, 822
FatI	CATG	5 cut(s)	388, 394, 587, 739, 747
FauI	CCCGC	3 cut(s)	308, 639, 911
FauNDI	CATATG	1 cut(s)	883
Fnu4HI	GCNGC	4 cut(s)	165, 759, 861, 873
FriOI	GRGCYC	1 cut(s)	388
Fsp4HI	GCNGC	4 cut(s)	165, 759, 861, 873
FspBI	CTAG	1 cut(s)	926
GluI	GCNGC	4 cut(s)	165, 759, 861, 873
GsuI	CTGGAG	1 cut(s)	243
HaeIII	GGCC	3 cut(s)	230, 669, 899
HapII	CCGG	2 cut(s)	231, 976
Hin1II	CATG	5 cut(s)	392, 398, 591, 743, 751
HinfI	GANTC	4 cut(s)	323, 356, 699, 810
HpaII	CCGG	2 cut(s)	231, 976
HphI	GGTGA	1 cut(s)	796
Hpy166II	GTNNAC	2 cut(s)	322, 658
Hpy188I	TCNGA	4 cut(s)	196, 562, 766, 839
Hpy188III	TCNNGA	4 cut(s)	85, 389, 740, 926
Hpy8I	GTNNAC	2 cut(s)	322, 658
HpyAV	CCTTC	2 cut(s)	646, 969
HpyCH4III	ACNGT	1 cut(s)	445
HpyCH4IV	ACGT	1 cut(s)	458
HpyCH4V	TGCA	6 cut(s)	8, 59, 152, 164, 683, 875
HpyF10VI	GCNNNNNNNGC	7 cut(s)	92, 227, 578, 680, 767, 857, 869
HpyF3I	CTNAG	1 cut(s)	594
HpySE526I	ACGT	1 cut(s)	458
Hsp92II	CATG	5 cut(s)	392, 398, 591, 743, 751
KroI	GCCGGC	1 cut(s)	230
KroNI	GCCGGC	1 cut(s)	232
KspI	CCGCGG	1 cut(s)	573
Kzo9I	GATC	3 cut(s)	76, 185, 922
Lsp1109I	GCAGC	4 cut(s)	176, 770, 847, 859
LweI	GCATC	2 cut(s)	146, 409
MaeI	CTAG	1 cut(s)	926
MaeII	ACGT	1 cut(s)	458
MalI	GATC	3 cut(s)	78, 187, 924
MboI	GATC	3 cut(s)	76, 185, 922
MboII	GAAGA	6 cut(s)	62, 305, 483, 587, 682, 806
MflI	RGATCY	2 cut(s)	185, 922
MhlI	GDGCHC	1 cut(s)	388
MlsI	TGGCCA	2 cut(s)	669, 899
MluCI	AATT	5 cut(s)	19, 33, 264, 450, 970
MluNI	TGGCCA	2 cut(s)	669, 899
MlyI	GAGTC	2 cut(s)	317, 804
MmeI	TCCRAC	4 cut(s)	333, 388, 448, 572
MnlI	CCTC	6 cut(s)	106, 220, 490, 589, 831, 917
Mox20I	TGGCCA	2 cut(s)	669, 899
Mph1103I	ATGCAT	1 cut(s)	685
MroNI	GCCGGC	1 cut(s)	230
MroXI	GAANNNNTTC	1 cut(s)	844
MscI	TGGCCA	2 cut(s)	669, 899
MseI	TTAA	6 cut(s)	114, 170, 372, 426, 449, 713
MslI	CAYNNNNRTG	2 cut(s)	393, 586
Msp20I	TGGCCA	2 cut(s)	669, 899
MspA1I	CMGCKG	1 cut(s)	572
MspI	CCGG	2 cut(s)	231, 976
MspR9I	CCNGG	5 cut(s)	382, 666, 671, 696, 791
MvaI	CCWGG	5 cut(s)	382, 666, 671, 696, 791
MvnI	CGCG	2 cut(s)	86, 572
MwoI	GCNNNNNNNGC	7 cut(s)	92, 227, 578, 680, 767, 857, 869
NaeI	GCCGGC	1 cut(s)	232
NdeI	CATATG	1 cut(s)	883
NdeII	GATC	3 cut(s)	76, 185, 922
NgoMIV	GCCGGC	1 cut(s)	230
NlaIII	CATG	5 cut(s)	392, 398, 591, 743, 751
NlaIV	GGNNCC	1 cut(s)	187
NruI	TCGCGA	1 cut(s)	86
NsiI	ATGCAT	1 cut(s)	685
NspI	RCATGY	1 cut(s)	751
PagI	TCATGA	2 cut(s)	388, 739
PasI	CCCWGGG	1 cut(s)	381
PdiI	GCCGGC	1 cut(s)	232
PdmI	GAANNNNTTC	1 cut(s)	844
PfeI	GAWTC	2 cut(s)	356, 699
PkrI	GCNGC	4 cut(s)	166, 760, 862, 874
PleI	GAGTC	2 cut(s)	317, 804
PpsI	GAGTC	2 cut(s)	317, 804
PshAI	GACNNNNGTC	1 cut(s)	8
PshBI	ATTAAT	1 cut(s)	449
Psp6I	CCWGG	5 cut(s)	380, 664, 669, 694, 789
PspGI	CCWGG	5 cut(s)	380, 664, 669, 694, 789
PspN4I	GGNNCC	1 cut(s)	187
PstI	CTGCAG	1 cut(s)	10
PsuI	RGATCY	2 cut(s)	185, 922
RruI	TCGCGA	1 cut(s)	86
RsaI	GTAC	3 cut(s)	568, 727, 953
RsaNI	GTAC	3 cut(s)	567, 726, 952
RseI	CAYNNNNRTG	2 cut(s)	393, 586
SacII	CCGCGG	1 cut(s)	573
SaqAI	TTAA	6 cut(s)	114, 170, 372, 426, 449, 713
SatI	GCNGC	4 cut(s)	165, 759, 861, 873
Sau3AI	GATC	3 cut(s)	76, 185, 922
SchI	GAGTC	2 cut(s)	317, 804
ScrFI	CCNGG	5 cut(s)	382, 666, 671, 696, 791
SduI	GDGCHC	1 cut(s)	388
SetI	ASST	7 cut(s)	169, 461, 526, 657, 763, 874, 947
SfaNI	GCATC	2 cut(s)	146, 409
SfcI	CTRYAG	1 cut(s)	6
Sfr303I	CCGCGG	1 cut(s)	573
SgrBI	CCGCGG	1 cut(s)	573
SmiMI	CAYNNNNRTG	2 cut(s)	393, 586
Sse9I	AATT	5 cut(s)	19, 33, 264, 450, 970
SsiI	CCGC	5 cut(s)	301, 570, 572, 632, 904
SspI	AATATT	1 cut(s)	310
SspMI	CTAG	1 cut(s)	926
StyD4I	CCNGG	5 cut(s)	380, 664, 669, 694, 789
StyI	CCWWGG	1 cut(s)	214
TaaI	ACNGT	1 cut(s)	445
TaiI	ACGT	1 cut(s)	461
TaqI	TCGA	1 cut(s)	967
TaqII	GACCGA	1 cut(s)	692
TasI	AATT	5 cut(s)	19, 33, 264, 450, 970
TatI	WGTACW	1 cut(s)	951
TfiI	GAWTC	2 cut(s)	356, 699
Tru1I	TTAA	6 cut(s)	114, 170, 372, 426, 449, 713
Tru9I	TTAA	6 cut(s)	114, 170, 372, 426, 449, 713
TscAI	CASTG	2 cut(s)	241, 294
TseI	GCWGC	4 cut(s)	164, 758, 860, 872
TspDTI	ATGAA	4 cut(s)	405, 411, 728, 900
TspGWI	ACGGA	1 cut(s)	722
TspRI	CASTG	2 cut(s)	241, 294
VspI	ATTAAT	1 cut(s)	449
XapI	RAATTY	3 cut(s)	33, 264, 970
XbaI	TCTAGA	1 cut(s)	925
XceI	RCATGY	1 cut(s)	751
XmnI	GAANNNNTTC	1 cut(s)	844
XspI	CTAG	1 cut(s)	926
Zsp2I	ATGCAT	1 cut(s)	685

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.