Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0006459

Physical Location & Seq

Genomic Coordinates Forward (+)

46030285 .. 46035437

Gene Structure 5153 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0363100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGGATGTTCCAAGCTCATGGGACGCGCTTCGCAAACAGGCTAGGAAACTTGAAGCTCAGTTGGATGAACAGATGAATTCTTATCGTAAGTTTGTCTCTGCAAAGGGTTCTGTCAAATTTGATGCTGCTGATAATGAGCTTGAATCTGGGATAGATCGATTATTAAAGCAACTCCAACAAGTAAATTTACAGATGCAAGCATGGGTATCATCAGGAGGATCAGAAATGGTTTCTCATACCTTGACTAGACATCAAGAGATTCTTCAAGATCTCACTCAGGAATTTTATCGTCTCCGCTCCAGCCTTAGAGCTAAGCAGGAGCACGCTTCACTACTTGAGGATTTTAGGGAGTTTGATCGAACAAGAGTTGACTTGGAAGCTGGTGGAGATTCTGCAGAAAACACTCTCCTGAAAGAACATGCTTCTGTTAGCCGAAGTACAGGACAGATGGATACTGTGATCTCTCAAGCTCAAGCAACTCTGGGTGCACTTGTCCTTCAACGTTCAACATTTGGCGGTATTAACTCAAAGCTCAGCAATATTGGCAGTCGCCTCCCAACGGTAAGTCACATCCTTTCTGCAATAAAGCGTAAAAAGTCTATGGATACCATCATTCTTTCGCTTGTCGCATCAGTGTGCACATTTCTCATATTTATCTACTGGTTGACAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004470 GO:0004473 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006090 GO:0006108 GO:0006629 GO:0006631 GO:0006633 GO:0008150 GO:0008152 GO:0008270 GO:0008610 GO:0009058 GO:0009507 GO:0009536 GO:0009987 GO:0016043 GO:0016053 GO:0016491 GO:0016614 GO:0016615 GO:0016616 GO:0019752 GO:0022607 GO:0032787 GO:0042802 GO:0042803 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046872 GO:0046914 GO:0046983 GO:0050897 GO:0051259 GO:0051260 GO:0051262 GO:0051289 GO:0055114 GO:0065003 GO:0071704 GO:0071840 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00620 ko00710 ko01100 ko01120 ko01200 map00620 map00710 map01100 map01120 map01200

Pfam Domains

Protein Families

Malic_M malic

Protein Analysis

224

Amino Acids

25.14

Weight (kDa)

8.67

Isoelectric Point (pI)

48.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
V-SNARE_C	PF12352	135 - 199	3.8e-18	Snare region anchored in the vesicle membrane C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0006459)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79750
fragaria_vesca	FvH4_6g32330 FvH4_6g32330 FvH4_6g32330
malus_domestica	MD09G1203300.v1.1 MD17G1184200.v1.1
prunus_persica	Prupe.3G059400_v2.0.a1 Prupe.3G059400_v2.0.a1 Prupe.3G059400_v2.0.a1
pyrus_communis	pycom09g12010 pycom17g19390
rosa_chinensis	RchiOBHm_Chr2g0140441
rosa_laevigata	RLG00000019867
rosa_multiflora	Rmu_sc0003516.1_g000006
rosa_roxburghii	Rroxscaffold_153G00436750 Rroxscaffold_2G00104830
rosa_rugosa	Rorug02G0362900 Rorug02G0363000 Rorug02G0363100 Rorug02G0363200 Rorug02G0363300
rosa_samantha	Rh2AG413500 Rh2BG423700 Rh2CG399700 Rh2DG433400
rosa_wichuraiana	Rw2G033890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	297
AccII	CGCG	1 cut(s)	26
AciI	CCGC	2 cut(s)	295, 516
AclI	AACGTT	1 cut(s)	502
AclWI	GGATC	1 cut(s)	226
AcsI	RAATTY	4 cut(s)	76, 116, 184, 281
AfaI	GTAC	1 cut(s)	439
AfiI	CCNNNNNNNGG	1 cut(s)	559
AgsI	TTSAA	5 cut(s)	53, 143, 266, 500, 507
AluBI	AGCT	7 cut(s)	15, 56, 139, 311, 380, 470, 532
AluI	AGCT	7 cut(s)	15, 56, 139, 311, 380, 470, 532
Alw21I	GWGCWC	3 cut(s)	324, 490, 641
Alw26I	GTCTC	2 cut(s)	100, 296
Alw44I	GTGCAC	2 cut(s)	486, 637
AlwI	GGATC	1 cut(s)	226
ApaLI	GTGCAC	2 cut(s)	486, 637
ApeKI	GCWGC	1 cut(s)	125
ApoI	RAATTY	4 cut(s)	76, 116, 184, 281
AspLEI	GCGC	1 cut(s)	28
BaeGI	GKGCMC	2 cut(s)	490, 641
Bbv12I	GWGCWC	3 cut(s)	324, 490, 641
BbvI	GCAGC	1 cut(s)	112
BccI	CCATC	2 cut(s)	442, 617
BciVI	GTATCC	2 cut(s)	445, 598
BcoDI	GTCTC	2 cut(s)	100, 296
BfaI	CTAG	2 cut(s)	42, 246
BfmI	CTRYAG	1 cut(s)	393
BfuI	GTATCC	2 cut(s)	445, 598
BglII	AGATCT	1 cut(s)	268
BisI	GCNGC	1 cut(s)	126
BlpI	GCTNAGC	2 cut(s)	312, 533
BlsI	GCNGC	1 cut(s)	127
BmsI	GCATC	3 cut(s)	112, 183, 638
BpmI	CTGGAG	1 cut(s)	283
Bpu1102I	GCTNAGC	2 cut(s)	312, 533
BpuEI	CTTGAG	3 cut(s)	356, 450, 456
Bsa29I	ATCGAT	1 cut(s)	157
Bsc4I	CCNNNNNNNGG	1 cut(s)	559
Bse1I	ACTGG	1 cut(s)	665
BseCI	ATCGAT	1 cut(s)	157
BseGI	GGATG	3 cut(s)	10, 70, 570
BseLI	CCNNNNNNNGG	1 cut(s)	559
BseMII	CTCAG	3 cut(s)	71, 290, 547
BseNI	ACTGG	1 cut(s)	665
BseSI	GKGCMC	2 cut(s)	490, 641
BseXI	GCAGC	1 cut(s)	112
Bsh1236I	CGCG	1 cut(s)	26
BshVI	ATCGAT	1 cut(s)	157
BsiHKAI	GWGCWC	3 cut(s)	324, 490, 641
BslFI	GGGAC	1 cut(s)	35
BslI	CCNNNNNNNGG	1 cut(s)	559
BsmAI	GTCTC	2 cut(s)	100, 296
BsmBI	CGTCTC	1 cut(s)	296
BsmFI	GGGAC	1 cut(s)	35
Bsp1286I	GDGCHC	3 cut(s)	324, 490, 641
Bsp143I	GATC	5 cut(s)	154, 218, 268, 355, 459
Bsp1720I	GCTNAGC	2 cut(s)	312, 533
BspACI	CCGC	2 cut(s)	295, 516
BspCNI	CTCAG	3 cut(s)	70, 289, 546
BspDI	ATCGAT	1 cut(s)	157
BspFNI	CGCG	1 cut(s)	26
BspMAI	CTGCAG	1 cut(s)	397
BspPI	GGATC	1 cut(s)	226
BsrBI	CCGCTC	1 cut(s)	297
BsrI	ACTGG	1 cut(s)	665
BssMI	GATC	5 cut(s)	154, 218, 268, 355, 459
Bst4CI	ACNGT	2 cut(s)	457, 562
BstC8I	GCNNGC	2 cut(s)	198, 324
BstDEI	CTNAG	5 cut(s)	57, 276, 305, 312, 533
BstF5I	GGATG	3 cut(s)	10, 70, 570
BstFNI	CGCG	1 cut(s)	26
BstHHI	GCGC	1 cut(s)	28
BstKTI	GATC	5 cut(s)	157, 221, 271, 358, 462
BstMAI	GTCTC	2 cut(s)	100, 296
BstMBI	GATC	5 cut(s)	154, 218, 268, 355, 459
BstMWI	GCNNNNNNNGC	1 cut(s)	543
BstNSI	RCATGY	1 cut(s)	422
BstSFI	CTRYAG	1 cut(s)	393
BstSLI	GKGCMC	2 cut(s)	490, 641
BstUI	CGCG	1 cut(s)	26
BstV1I	GCAGC	1 cut(s)	112
BstX2I	RGATCY	1 cut(s)	268
BstXI	CCANNNNNNTGG	1 cut(s)	18
BstYI	RGATCY	1 cut(s)	268
Bsu15I	ATCGAT	1 cut(s)	157
BsuI	GTATCC	2 cut(s)	445, 598
BsuTUI	ATCGAT	1 cut(s)	157
BtsCI	GGATG	3 cut(s)	10, 70, 570
BtsIMutI	CAGTG	1 cut(s)	639
Cac8I	GCNNGC	2 cut(s)	198, 324
CfoI	GCGC	1 cut(s)	28
ClaI	ATCGAT	1 cut(s)	157
CseI	GACGC	1 cut(s)	32
Csp6I	GTAC	1 cut(s)	438
CviAII	CATG	3 cut(s)	18, 201, 419
CviQI	GTAC	1 cut(s)	438
DdeI	CTNAG	5 cut(s)	57, 276, 305, 312, 533
DpnI	GATC	5 cut(s)	156, 220, 270, 357, 461
DpnII	GATC	5 cut(s)	154, 218, 268, 355, 459
EcoRI	GAATTC	1 cut(s)	76
Esp3I	CGTCTC	1 cut(s)	296
FaeI	CATG	3 cut(s)	21, 204, 422
FaiI	YATR	6 cut(s)	19, 202, 237, 420, 602, 650
FalI	AAGNNNNNCTT	2 cut(s)	246, 278
FaqI	GGGAC	1 cut(s)	35
FatI	CATG	3 cut(s)	17, 200, 418
Fnu4HI	GCNGC	1 cut(s)	126
FokI	GGATG	3 cut(s)	17, 77, 557
Fsp4HI	GCNGC	1 cut(s)	126
FspBI	CTAG	2 cut(s)	42, 246
GlaI	GCGC	1 cut(s)	27
GluI	GCNGC	1 cut(s)	126
GsuI	CTGGAG	1 cut(s)	283
HgaI	GACGC	1 cut(s)	32
HhaI	GCGC	1 cut(s)	28
Hin1II	CATG	3 cut(s)	21, 204, 422
Hin6I	GCGC	1 cut(s)	26
HinP1I	GCGC	1 cut(s)	26
HincII	GTYRAC	2 cut(s)	370, 666
HindII	GTYRAC	2 cut(s)	370, 666
HinfI	GANTC	3 cut(s)	143, 259, 389
Hpy166II	GTNNAC	4 cut(s)	370, 488, 639, 666
Hpy188I	TCNGA	1 cut(s)	223
Hpy188III	TCNNGA	5 cut(s)	213, 254, 266, 278, 409
Hpy8I	GTNNAC	4 cut(s)	370, 488, 639, 666
HpyAV	CCTTC	1 cut(s)	506
HpyCH4III	ACNGT	2 cut(s)	457, 562
HpyCH4IV	ACGT	1 cut(s)	502
HpyCH4V	TGCA	6 cut(s)	101, 196, 395, 488, 581, 639
HpyF10VI	GCNNNNNNNGC	1 cut(s)	543
HpyF3I	CTNAG	5 cut(s)	57, 276, 305, 312, 533
HpySE526I	ACGT	1 cut(s)	502
Hsp92II	CATG	3 cut(s)	21, 204, 422
HspAI	GCGC	1 cut(s)	26
Kzo9I	GATC	5 cut(s)	154, 218, 268, 355, 459
LmnI	GCTCC	2 cut(s)	302, 319
Lsp1109I	GCAGC	1 cut(s)	112
LweI	GCATC	3 cut(s)	112, 183, 638
MaeI	CTAG	2 cut(s)	42, 246
MaeII	ACGT	1 cut(s)	502
MaeIII	GTNAC	1 cut(s)	566
MalI	GATC	5 cut(s)	156, 220, 270, 357, 461
MbiI	CCGCTC	1 cut(s)	297
MboI	GATC	5 cut(s)	154, 218, 268, 355, 459
MboII	GAAGA	1 cut(s)	254
MflI	RGATCY	1 cut(s)	268
MhlI	GDGCHC	3 cut(s)	324, 490, 641
MluCI	AATT	4 cut(s)	76, 116, 184, 281
MmeI	TCCRAC	2 cut(s)	42, 199
MnlI	CCTC	3 cut(s)	209, 331, 563
MseI	TTAA	2 cut(s)	164, 522
MslI	CAYNNNNRTG	1 cut(s)	634
MvnI	CGCG	1 cut(s)	26
MwoI	GCNNNNNNNGC	1 cut(s)	543
NdeII	GATC	5 cut(s)	154, 218, 268, 355, 459
NlaIII	CATG	3 cut(s)	21, 204, 422
NmuCI	GTSAC	1 cut(s)	566
NspI	RCATGY	1 cut(s)	422
PfeI	GAWTC	3 cut(s)	143, 259, 389
PkrI	GCNGC	1 cut(s)	127
Psp1406I	AACGTT	1 cut(s)	502
PstI	CTGCAG	1 cut(s)	397
PsuI	RGATCY	1 cut(s)	268
RsaI	GTAC	1 cut(s)	439
RsaNI	GTAC	1 cut(s)	438
RseI	CAYNNNNRTG	1 cut(s)	634
SaqAI	TTAA	2 cut(s)	164, 522
SatI	GCNGC	1 cut(s)	126
Sau3AI	GATC	5 cut(s)	154, 218, 268, 355, 459
SduI	GDGCHC	3 cut(s)	324, 490, 641
SetI	ASST	9 cut(s)	17, 58, 141, 242, 313, 382, 472, 505, 534
SfaNI	GCATC	3 cut(s)	112, 183, 638
SfcI	CTRYAG	1 cut(s)	393
SmiMI	CAYNNNNRTG	1 cut(s)	634
SmlI	CTYRAG	3 cut(s)	335, 465, 471
SmoI	CTYRAG	3 cut(s)	335, 465, 471
Sse9I	AATT	4 cut(s)	76, 116, 184, 281
SsiI	CCGC	2 cut(s)	295, 516
SspI	AATATT	1 cut(s)	541
SspMI	CTAG	2 cut(s)	42, 246
TaaI	ACNGT	2 cut(s)	457, 562
TaiI	ACGT	1 cut(s)	505
TaqI	TCGA	2 cut(s)	157, 358
TasI	AATT	4 cut(s)	76, 116, 184, 281
TatI	WGTACW	1 cut(s)	437
TfiI	GAWTC	3 cut(s)	143, 259, 389
Tru1I	TTAA	2 cut(s)	164, 522
Tru9I	TTAA	2 cut(s)	164, 522
TscAI	CASTG	1 cut(s)	639
TseFI	GTSAC	1 cut(s)	566
TseI	GCWGC	1 cut(s)	125
Tsp45I	GTSAC	1 cut(s)	566
TspDTI	ATGAA	2 cut(s)	81, 89
TspRI	CASTG	1 cut(s)	639
VneI	GTGCAC	2 cut(s)	486, 637
XapI	RAATTY	4 cut(s)	76, 116, 184, 281
XceI	RCATGY	1 cut(s)	422
XspI	CTAG	2 cut(s)	42, 246

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.