Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0006459

Physical Location & Seq

Genomic Coordinates Reverse (-)

46024629 .. 46025242

Gene Structure 614 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0362900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGGCCATTTTAACTTCGTCAAGGGAATCGTGGTCTCCGATGTCAGGGGTCCTCAATATTTTGAGGCACAATTCGAGAATCTTCTTGCAAGATTTGTCCAAGAATGTGTTGCCAAATATTGGGATTTTGAATGAACTGGGGATGCCGCAGCAGTGTGTTGCTTTGTTGCTGACGCATTATGCTAATCTTGTGTTGAGAAGACCTGAATTCTTCGGCCAGCTTGTGAGGGAAGTTAGAGAAATAGGATTCGACCCTCGGAAATCGAGCTTTGTGACTGCATTGCGGGCATTGTCTGGGAAGGAGGAGACGTGGAACCGAAATCAAGCGGCTTTGAGGAGGTGGGGATGGTCTGACATGGATATTGTTCGTGCCTTCAGGTTGCATCCACTGTTCGGAGAAGAAAATATTGCAAGCAATGGACTTGTTAGTGAACCAGATGGGGTGGCGGGCGGAACAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004470 GO:0004473 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006090 GO:0006108 GO:0006629 GO:0006631 GO:0006633 GO:0008150 GO:0008152 GO:0008270 GO:0008610 GO:0009058 GO:0009507 GO:0009536 GO:0009987 GO:0016043 GO:0016053 GO:0016491 GO:0016614 GO:0016615 GO:0016616 GO:0019752 GO:0022607 GO:0032787 GO:0042802 GO:0042803 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046872 GO:0046914 GO:0046983 GO:0050897 GO:0051259 GO:0051260 GO:0051262 GO:0051289 GO:0055114 GO:0065003 GO:0071704 GO:0071840 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00620 ko00710 ko01100 ko01120 ko01200 map00620 map00710 map01100 map01120 map01200

Pfam Domains

Protein Families

Malic_M malic

Protein Analysis

153

Amino Acids

17.2

Weight (kDa)

7.98

Isoelectric Point (pI)

74.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006459)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79750
fragaria_vesca	FvH4_6g32330 FvH4_6g32330 FvH4_6g32330
malus_domestica	MD09G1203300.v1.1 MD17G1184200.v1.1
prunus_persica	Prupe.3G059400_v2.0.a1 Prupe.3G059400_v2.0.a1 Prupe.3G059400_v2.0.a1
pyrus_communis	pycom09g12010 pycom17g19390
rosa_chinensis	RchiOBHm_Chr2g0140441
rosa_laevigata	RLG00000019867
rosa_multiflora	Rmu_sc0003516.1_g000006
rosa_roxburghii	Rroxscaffold_153G00436750 Rroxscaffold_2G00104830
rosa_rugosa	Rorug02G0362900 Rorug02G0363000 Rorug02G0363100 Rorug02G0363200 Rorug02G0363300
rosa_samantha	Rh2AG413500 Rh2BG423700 Rh2CG399700 Rh2DG433400
rosa_wichuraiana	Rw2G033890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	119
AciI	CCGC	5 cut(s)	146, 283, 326, 446, 450
AcoI	YGGCCR	2 cut(s)	3, 214
AcsI	RAATTY	1 cut(s)	206
AcuI	CTGAAG	1 cut(s)	358
AfiI	CCNNNNNNNGG	3 cut(s)	44, 119, 392
AgsI	TTSAA	1 cut(s)	130
AjiI	CACGTC	1 cut(s)	309
AluBI	AGCT	2 cut(s)	220, 267
AluI	AGCT	2 cut(s)	220, 267
Alw26I	GTCTC	2 cut(s)	39, 299
AoxI	GGCC	2 cut(s)	3, 214
ApeKI	GCWGC	1 cut(s)	148
ApoI	RAATTY	1 cut(s)	206
AspS9I	GGNCC	1 cut(s)	49
AvaII	GGWCC	1 cut(s)	49
BalI	TGGCCA	1 cut(s)	5
BbsI	GAAGAC	1 cut(s)	205
BbvI	GCAGC	1 cut(s)	160
BccI	CCATC	2 cut(s)	339, 431
BcoDI	GTCTC	2 cut(s)	39, 299
BisI	GCNGC	3 cut(s)	146, 149, 327
BlsI	GCNGC	3 cut(s)	147, 150, 328
Bme18I	GGWCC	1 cut(s)	49
BmgBI	CACGTC	1 cut(s)	309
BmgT120I	GGNCC	1 cut(s)	49
BmiI	GGNNCC	2 cut(s)	50, 314
BmrI	ACTGGG	1 cut(s)	146
BmsI	GCATC	2 cut(s)	132, 391
BmuI	ACTGGG	1 cut(s)	146
BpiI	GAAGAC	1 cut(s)	205
BsaI	GGTCTC	1 cut(s)	39
BsaJI	CCNNGG	1 cut(s)	254
BsaXI	ACNNNNNCTCC	2 cut(s)	293, 323
Bsc4I	CCNNNNNNNGG	3 cut(s)	44, 119, 392
Bse1I	ACTGG	1 cut(s)	141
Bse3DI	GCAATG	2 cut(s)	278, 421
BseDI	CCNNGG	1 cut(s)	254
BseGI	GGATG	3 cut(s)	147, 350, 382
BseLI	CCNNNNNNNGG	3 cut(s)	44, 119, 392
BseMI	GCAATG	2 cut(s)	278, 421
BseNI	ACTGG	1 cut(s)	141
BseRI	GAGGAG	2 cut(s)	317, 349
BseXI	GCAGC	1 cut(s)	160
BshFI	GGCC	2 cut(s)	5, 216
BslI	CCNNNNNNNGG	3 cut(s)	44, 119, 392
BsmAI	GTCTC	2 cut(s)	39, 299
BsmBI	CGTCTC	1 cut(s)	299
BsnI	GGCC	2 cut(s)	5, 216
Bso31I	GGTCTC	1 cut(s)	39
BspACI	CCGC	5 cut(s)	146, 283, 326, 446, 450
BspANI	GGCC	2 cut(s)	5, 216
BspLI	GGNNCC	2 cut(s)	50, 314
BspTNI	GGTCTC	1 cut(s)	39
BsrDI	GCAATG	2 cut(s)	278, 421
BsrI	ACTGG	1 cut(s)	141
BssECI	CCNNGG	1 cut(s)	254
Bst4CI	ACNGT	1 cut(s)	390
BstC8I	GCNNGC	4 cut(s)	218, 285, 412, 448
BstF5I	GGATG	3 cut(s)	147, 350, 382
BstMAI	GTCTC	2 cut(s)	39, 299
BstMWI	GCNNNNNNNGC	1 cut(s)	284
BstV1I	GCAGC	1 cut(s)	160
BstV2I	GAAGAC	1 cut(s)	205
BsuRI	GGCC	2 cut(s)	5, 216
BtrI	CACGTC	1 cut(s)	309
BtsCI	GGATG	3 cut(s)	147, 350, 382
BtsI	GCAGTG	1 cut(s)	158
BtsIMutI	CAGTG	2 cut(s)	158, 386
Cac8I	GCNNGC	4 cut(s)	218, 285, 412, 448
Cfr13I	GGNCC	1 cut(s)	49
CseI	GACGC	1 cut(s)	181
CviAII	CATG	1 cut(s)	355
CviJI	RGCY	5 cut(s)	5, 216, 220, 267, 329
CviKI_1	RGCY	5 cut(s)	5, 216, 220, 267, 329
EaeI	YGGCCR	2 cut(s)	3, 214
Eco31I	GGTCTC	1 cut(s)	39
Eco47I	GGWCC	1 cut(s)	49
Eco57I	CTGAAG	1 cut(s)	358
EcoO109I	RGGNCCY	1 cut(s)	49
EcoRI	GAATTC	1 cut(s)	206
Esp3I	CGTCTC	1 cut(s)	299
FaeI	CATG	1 cut(s)	358
FaiI	YATR	2 cut(s)	180, 356
FatI	CATG	1 cut(s)	354
FauI	CCCGC	2 cut(s)	276, 439
Fnu4HI	GCNGC	3 cut(s)	146, 149, 327
FokI	GGATG	3 cut(s)	154, 357, 369
Fsp4HI	GCNGC	3 cut(s)	146, 149, 327
GluI	GCNGC	3 cut(s)	146, 149, 327
HaeIII	GGCC	2 cut(s)	5, 216
HgaI	GACGC	1 cut(s)	181
Hin1II	CATG	1 cut(s)	358
HinfI	GANTC	3 cut(s)	26, 78, 246
Hpy166II	GTNNAC	1 cut(s)	431
Hpy188I	TCNGA	4 cut(s)	39, 258, 352, 395
Hpy188III	TCNNGA	1 cut(s)	75
Hpy8I	GTNNAC	1 cut(s)	431
HpyAV	CCTTC	2 cut(s)	292, 382
HpyCH4III	ACNGT	1 cut(s)	390
HpyCH4IV	ACGT	1 cut(s)	308
HpyCH4V	TGCA	4 cut(s)	88, 278, 382, 410
HpyF10VI	GCNNNNNNNGC	1 cut(s)	284
HpySE526I	ACGT	1 cut(s)	308
Hsp92II	CATG	1 cut(s)	358
LpnPI	CCDG	7 cut(s)	30, 122, 216, 230, 279, 361, 447
Lsp1109I	GCAGC	1 cut(s)	160
LweI	GCATC	2 cut(s)	132, 391
MaeII	ACGT	1 cut(s)	308
MaeIII	GTNAC	1 cut(s)	271
MboII	GAAGA	4 cut(s)	73, 202, 210, 410
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	70, 206
MluNI	TGGCCA	1 cut(s)	5
MnlI	CCTC	7 cut(s)	57, 62, 219, 264, 295, 327, 330
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	11, 460
Msp20I	TGGCCA	1 cut(s)	5
MwoI	GCNNNNNNNGC	1 cut(s)	284
NlaIII	CATG	1 cut(s)	358
NlaIV	GGNNCC	2 cut(s)	50, 314
NmuCI	GTSAC	1 cut(s)	271
PcsI	WCGNNNNNNNCGW	1 cut(s)	35
PfeI	GAWTC	3 cut(s)	26, 78, 246
PflMI	CCANNNNNTGG	1 cut(s)	119
PkrI	GCNGC	3 cut(s)	147, 150, 328
PpuMI	RGGWCCY	1 cut(s)	49
Psp5II	RGGWCCY	1 cut(s)	49
PspN4I	GGNNCC	2 cut(s)	50, 314
PspPI	GGNCC	1 cut(s)	49
PspPPI	RGGWCCY	1 cut(s)	49
SaqAI	TTAA	2 cut(s)	11, 460
SatI	GCNGC	3 cut(s)	146, 149, 327
Sau96I	GGNCC	1 cut(s)	49
SetI	ASST	6 cut(s)	205, 222, 269, 311, 341, 380
SfaNI	GCATC	2 cut(s)	132, 391
SinI	GGWCC	1 cut(s)	49
Sse9I	AATT	2 cut(s)	70, 206
SsiI	CCGC	5 cut(s)	146, 283, 326, 446, 450
SspI	AATATT	3 cut(s)	58, 118, 406
TaaI	ACNGT	1 cut(s)	390
TaiI	ACGT	1 cut(s)	311
TaqI	TCGA	3 cut(s)	74, 249, 263
TasI	AATT	2 cut(s)	70, 206
TauI	GCSGC	2 cut(s)	148, 329
TfiI	GAWTC	3 cut(s)	26, 78, 246
Tru1I	TTAA	2 cut(s)	11, 460
Tru9I	TTAA	2 cut(s)	11, 460
TscAI	CASTG	2 cut(s)	158, 393
TseFI	GTSAC	1 cut(s)	271
TseI	GCWGC	1 cut(s)	148
Tsp45I	GTSAC	1 cut(s)	271
TspDTI	ATGAA	1 cut(s)	147
TspRI	CASTG	2 cut(s)	158, 393
Van91I	CCANNNNNTGG	1 cut(s)	119
VpaK11BI	GGWCC	1 cut(s)	49
XapI	RAATTY	1 cut(s)	206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.