Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0006459

Physical Location & Seq

Genomic Coordinates Reverse (-)

46025774 .. 46028993

Gene Structure 3220 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0363000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGAGTCAAGAGGTGGCGCAGCCGTTGGCAACCGTGCCGGAGATAATATTGAAGAAGAGGAAAAGTAATGAAGAATTGGCTTTGAGGAGGAAGGAGCAATTGGAGCAGAGGAAGTTTCGCCTTAACAAGAACAAGCAAGAGTTTATCAAGAAACCTGAGGACTTTGTCAAAGAGTTTCGCTACAGGGAGGTGGACCTTGTCCAAATGAAACACAGGTTGAAGAGAAAGAGATCAGCATTAGAGACAACTAACCCCCAGCTTCTTTTGGTCATTCGCATACAGGGGAAAAATGACATGCATCCTGTTGTTAGGAAGAACTTATACAGCCTAAACTTGAGGAAAATCTTCAATGCTGTTCTCGTGAGAGCAGATGAAGCAATGTTAGAAAAGTTGCAGAGGGTGGAGCCTTATGTTACCTATGGGTATCCTAGCCTTAAGAATGTGAAGGAGTTGATTTACAAGAAAGGTTATGCAAAGATAGGCAAGCAAAGAGTTCCTTTGACTGACAACAACTTGATTGAAGAGGCACTGGGGAAGTATAATATCATATGCATAGAAGATATAGTGCATGAAATTGCTTCTACTGGTAAATATTTTAAGGAGGCTGCCAGCTTTCTATGGCCCTTTACACTCAACAAGCCAGAAGTAGGATTGAAAGGAGTAAAAGCACGTTACCTAGATGGTGGAGACACTGGTAATCGGGAGGATAAAATCAATGATCTGATTAGCAAGATGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004470 GO:0004473 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006090 GO:0006108 GO:0006629 GO:0006631 GO:0006633 GO:0008150 GO:0008152 GO:0008270 GO:0008610 GO:0009058 GO:0009507 GO:0009536 GO:0009987 GO:0016043 GO:0016053 GO:0016491 GO:0016614 GO:0016615 GO:0016616 GO:0019752 GO:0022607 GO:0032787 GO:0042802 GO:0042803 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046872 GO:0046914 GO:0046983 GO:0050897 GO:0051259 GO:0051260 GO:0051262 GO:0051289 GO:0055114 GO:0065003 GO:0071704 GO:0071840 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00620 ko00710 ko01100 ko01120 ko01200 map00620 map00710 map01100 map01120 map01200

Pfam Domains

Protein Families

Malic_M malic

Protein Analysis

246

Amino Acids

28.76

Weight (kDa)

9.76

Isoelectric Point (pI)

44.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L30_N	PF08079	12 - 77	1.3e-09	Ribosomal L30 N-terminal domain
Ribosomal_L30	PF00327	88 - 138	2.5e-11	Ribosomal protein L30p/L7e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006459)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79750
fragaria_vesca	FvH4_6g32330 FvH4_6g32330 FvH4_6g32330
malus_domestica	MD09G1203300.v1.1 MD17G1184200.v1.1
prunus_persica	Prupe.3G059400_v2.0.a1 Prupe.3G059400_v2.0.a1 Prupe.3G059400_v2.0.a1
pyrus_communis	pycom09g12010 pycom17g19390
rosa_chinensis	RchiOBHm_Chr2g0140441
rosa_laevigata	RLG00000019867
rosa_multiflora	Rmu_sc0003516.1_g000006
rosa_roxburghii	Rroxscaffold_153G00436750 Rroxscaffold_2G00104830
rosa_rugosa	Rorug02G0362900 Rorug02G0363000 Rorug02G0363100 Rorug02G0363200 Rorug02G0363300
rosa_samantha	Rh2AG413500 Rh2BG423700 Rh2CG399700 Rh2DG433400
rosa_wichuraiana	Rw2G033890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfiI	CCNNNNNNNGG	1 cut(s)	647
AflII	CTTAAG	1 cut(s)	434
AgsI	TTSAA	5 cut(s)	52, 220, 349, 521, 655
AjuI	GAANNNNNNNTTGG	2 cut(s)	83, 115
AluBI	AGCT	2 cut(s)	259, 612
AluI	AGCT	2 cut(s)	259, 612
Alw26I	GTCTC	2 cut(s)	236, 681
AoxI	GGCC	1 cut(s)	620
ApeKI	GCWGC	2 cut(s)	19, 605
Asp700I	GAANNNNTTC	1 cut(s)	344
AspLEI	GCGC	1 cut(s)	19
AspS9I	GGNCC	2 cut(s)	193, 621
AvaII	GGWCC	1 cut(s)	193
AxyI	CCTNAGG	1 cut(s)	156
BarI	GAAGNNNNNNTAC	2 cut(s)	305, 337
BauI	CACGAG	1 cut(s)	359
BbvI	GCAGC	2 cut(s)	31, 592
BccI	CCATC	1 cut(s)	674
BceAI	ACGGC	1 cut(s)	7
BciVI	GTATCC	1 cut(s)	435
BcoDI	GTCTC	2 cut(s)	236, 681
BfaI	CTAG	2 cut(s)	429, 677
BfmI	CTRYAG	1 cut(s)	181
BfrI	CTTAAG	1 cut(s)	434
BfuI	GTATCC	1 cut(s)	435
BisI	GCNGC	2 cut(s)	20, 606
BlsI	GCNGC	2 cut(s)	21, 607
Bme18I	GGWCC	1 cut(s)	193
BmgT120I	GGNCC	2 cut(s)	193, 621
BmiI	GGNNCC	1 cut(s)	405
BmrI	ACTGGG	1 cut(s)	539
BmsI	GCATC	1 cut(s)	307
BmuI	ACTGGG	1 cut(s)	539
BpuEI	CTTGAG	1 cut(s)	355
Bsc4I	CCNNNNNNNGG	1 cut(s)	647
Bse1I	ACTGG	3 cut(s)	534, 589, 697
Bse21I	CCTNAGG	1 cut(s)	156
Bse3DI	GCAATG	1 cut(s)	384
BseGI	GGATG	1 cut(s)	298
BseLI	CCNNNNNNNGG	1 cut(s)	647
BseMI	GCAATG	1 cut(s)	384
BseMII	CTCAG	1 cut(s)	147
BseNI	ACTGG	3 cut(s)	534, 589, 697
BseRI	GAGGAG	1 cut(s)	100
BseXI	GCAGC	2 cut(s)	31, 592
BseYI	CCCAGC	1 cut(s)	255
BshFI	GGCC	1 cut(s)	622
BsiSI	CCGG	1 cut(s)	38
BslI	CCNNNNNNNGG	1 cut(s)	647
BsmAI	GTCTC	2 cut(s)	236, 681
BsnI	GGCC	1 cut(s)	622
Bsp143I	GATC	2 cut(s)	230, 718
BspANI	GGCC	1 cut(s)	622
BspCNI	CTCAG	1 cut(s)	148
BspLI	GGNNCC	1 cut(s)	405
BspTI	CTTAAG	1 cut(s)	434
BsrDI	GCAATG	1 cut(s)	384
BsrI	ACTGG	3 cut(s)	534, 589, 697
BssMI	GATC	2 cut(s)	230, 718
BssSI	CACGAG	1 cut(s)	359
Bst2BI	CACGAG	1 cut(s)	359
Bst4CI	ACNGT	1 cut(s)	34
Bst6I	CTCTTC	3 cut(s)	50, 215, 516
BstAFI	CTTAAG	1 cut(s)	434
BstC8I	GCNNGC	2 cut(s)	485, 610
BstDEI	CTNAG	1 cut(s)	156
BstF5I	GGATG	1 cut(s)	298
BstHHI	GCGC	1 cut(s)	19
BstKTI	GATC	2 cut(s)	233, 721
BstMAI	GTCTC	2 cut(s)	236, 681
BstMBI	GATC	2 cut(s)	230, 718
BstMWI	GCNNNNNNNGC	2 cut(s)	103, 374
BstNSI	RCATGY	1 cut(s)	298
BstSFI	CTRYAG	1 cut(s)	181
BstV1I	GCAGC	2 cut(s)	31, 592
Bsu36I	CCTNAGG	1 cut(s)	156
BsuI	GTATCC	1 cut(s)	435
BsuRI	GGCC	1 cut(s)	622
BtsCI	GGATG	1 cut(s)	298
BtsIMutI	CAGTG	2 cut(s)	527, 690
Cac8I	GCNNGC	2 cut(s)	485, 610
CfoI	GCGC	1 cut(s)	19
Cfr13I	GGNCC	2 cut(s)	193, 621
CviAII	CATG	2 cut(s)	295, 569
DdeI	CTNAG	1 cut(s)	156
DpnI	GATC	2 cut(s)	232, 720
DpnII	GATC	2 cut(s)	230, 718
Eam1104I	CTCTTC	3 cut(s)	50, 215, 516
EarI	CTCTTC	3 cut(s)	50, 215, 516
Eco47I	GGWCC	1 cut(s)	193
Eco81I	CCTNAGG	1 cut(s)	156
EcoT22I	ATGCAT	2 cut(s)	300, 554
FaeI	CATG	2 cut(s)	298, 572
FalI	AAGNNNNNCTT	2 cut(s)	481, 513
FatI	CATG	2 cut(s)	294, 568
FauNDI	CATATG	1 cut(s)	548
Fnu4HI	GCNGC	2 cut(s)	20, 606
FokI	GGATG	1 cut(s)	285
Fsp4HI	GCNGC	2 cut(s)	20, 606
FspBI	CTAG	2 cut(s)	429, 677
GlaI	GCGC	1 cut(s)	18
GluI	GCNGC	2 cut(s)	20, 606
GsaI	CCCAGC	1 cut(s)	259
HaeIII	GGCC	1 cut(s)	622
HapII	CCGG	1 cut(s)	38
HhaI	GCGC	1 cut(s)	19
Hin1II	CATG	2 cut(s)	298, 572
Hin6I	GCGC	1 cut(s)	17
HinP1I	GCGC	1 cut(s)	17
HinfI	GANTC	1 cut(s)	4
HpaII	CCGG	1 cut(s)	38
Hpy166II	GTNNAC	1 cut(s)	193
Hpy188I	TCNGA	1 cut(s)	723
Hpy188III	TCNNGA	4 cut(s)	8, 148, 361, 701
Hpy8I	GTNNAC	1 cut(s)	193
HpyAV	CCTTC	2 cut(s)	85, 439
HpyCH4III	ACNGT	1 cut(s)	34
HpyCH4IV	ACGT	1 cut(s)	670
HpyCH4V	TGCA	5 cut(s)	298, 394, 473, 552, 568
HpyF10VI	GCNNNNNNNGC	2 cut(s)	103, 374
HpyF3I	CTNAG	1 cut(s)	156
HpySE526I	ACGT	1 cut(s)	670
Hsp92II	CATG	2 cut(s)	298, 572
HspAI	GCGC	1 cut(s)	17
Kzo9I	GATC	2 cut(s)	230, 718
LmnI	GCTCC	3 cut(s)	94, 103, 403
Lsp1109I	GCAGC	2 cut(s)	31, 592
LweI	GCATC	1 cut(s)	307
MaeI	CTAG	2 cut(s)	429, 677
MaeII	ACGT	1 cut(s)	670
MaeIII	GTNAC	2 cut(s)	412, 671
MalI	GATC	2 cut(s)	232, 720
MboI	GATC	2 cut(s)	230, 718
MboII	GAAGA	8 cut(s)	64, 67, 83, 232, 325, 337, 533, 569
MfeI	CAATTG	1 cut(s)	98
MluCI	AATT	4 cut(s)	74, 98, 573, 736
MlyI	GAGTC	1 cut(s)	13
Mph1103I	ATGCAT	2 cut(s)	300, 554
MroXI	GAANNNNTTC	1 cut(s)	344
MseI	TTAA	3 cut(s)	123, 435, 597
MspCI	CTTAAG	1 cut(s)	434
MspI	CCGG	1 cut(s)	38
MunI	CAATTG	1 cut(s)	98
MwoI	GCNNNNNNNGC	2 cut(s)	103, 374
NdeI	CATATG	1 cut(s)	548
NdeII	GATC	2 cut(s)	230, 718
NlaIII	CATG	2 cut(s)	298, 572
NlaIV	GGNNCC	1 cut(s)	405
NsiI	ATGCAT	2 cut(s)	300, 554
NspI	RCATGY	1 cut(s)	298
PdmI	GAANNNNTTC	1 cut(s)	344
PflFI	GACNNNGTC	2 cut(s)	164, 197
PkrI	GCNGC	2 cut(s)	21, 607
PleI	GAGTC	1 cut(s)	12
PpsI	GAGTC	1 cut(s)	12
PspFI	CCCAGC	1 cut(s)	255
PspN4I	GGNNCC	1 cut(s)	405
PspPI	GGNCC	2 cut(s)	193, 621
PsyI	GACNNNGTC	2 cut(s)	164, 197
SaqAI	TTAA	3 cut(s)	123, 435, 597
SatI	GCNGC	2 cut(s)	20, 606
Sau3AI	GATC	2 cut(s)	230, 718
Sau96I	GGNCC	2 cut(s)	193, 621
SchI	GAGTC	1 cut(s)	13
SfaNI	GCATC	1 cut(s)	307
SfcI	CTRYAG	1 cut(s)	181
SinI	GGWCC	1 cut(s)	193
SmlI	CTYRAG	2 cut(s)	334, 434
SmoI	CTYRAG	2 cut(s)	334, 434
Sse9I	AATT	4 cut(s)	74, 98, 573, 736
SspI	AATATT	2 cut(s)	48, 593
SspMI	CTAG	2 cut(s)	429, 677
TaaI	ACNGT	1 cut(s)	34
TaiI	ACGT	1 cut(s)	673
TasI	AATT	4 cut(s)	74, 98, 573, 736
Tru1I	TTAA	3 cut(s)	123, 435, 597
Tru9I	TTAA	3 cut(s)	123, 435, 597
TscAI	CASTG	2 cut(s)	534, 697
TseI	GCWGC	2 cut(s)	19, 605
TspDTI	ATGAA	4 cut(s)	84, 221, 387, 585
TspRI	CASTG	2 cut(s)	534, 697
Tth111I	GACNNNGTC	2 cut(s)	164, 197
Vha464I	CTTAAG	1 cut(s)	434
VpaK11BI	GGWCC	1 cut(s)	193
XceI	RCATGY	1 cut(s)	298
XmnI	GAANNNNTTC	1 cut(s)	344
XspI	CTAG	2 cut(s)	429, 677
Zsp2I	ATGCAT	2 cut(s)	300, 554

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.