Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0006459

Physical Location & Seq

Genomic Coordinates Forward (+)

46041744 .. 46043257

Gene Structure 1514 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0363200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGGAAACCCAAAGCCAAAAGCCACATAAACAACCAGTACCAGAAGATACTAATCAACAACTCCCACAACAAGCTCCAAACCCTGCAGATATTGTCTTGGATCTAAGCCTCATATCCAACAAAATATCCGATCAGAGGTTGAATACCGAACTCAATCTCATCGACTGCGTCGATTTGAATATGTGTTCCGAGACTAGTACTGATGATCCTAAAGGTACTAGTCATGAGCCTAGAGTTTTCTCCTGCAATTATTGTCAAAGAAAGTTTTACAGTTCCCAAGCACTTGGAGGGCACCAAAATGCTCACAAGAGAGAGAGAACACTGGCAAAAAAAGCAGTGACACACAAGATTGGTGCAGCCTCAGATAACTTTAGGCTTCTCTCACACAGATTCTCTAGCATGGCTTCTCTCCCTTTGCATGGCTCTTTCAATAATAGGTCACTTGGTATTCAAGTGCATTCTACAATTCACAAGCCTTCCTGGTACCAATCAAGTCTTTATGGACATAATGGCAATTTTCTGAGACACCCCATTGATCAACAACCTGCAATTGGGCGGCTTGCTGCCGCTGGATCCATGTCATCGTCTTCTTCGAGTGGTGGTGGCATGGGAAGGTTCGAGACTAGTACTGCTCGGAAGTTTTTTCCGGTGGCTGAAAGAATTGGAGGTTTCTGGTGGAATAGTAGTGTTAGCCATTTGAAGACTACGCAAGATCATGAGTTGCAGAAGCTTGACTTGTCCCTCAAACTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004470 GO:0004473 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006090 GO:0006108 GO:0006629 GO:0006631 GO:0006633 GO:0008150 GO:0008152 GO:0008270 GO:0008610 GO:0009058 GO:0009507 GO:0009536 GO:0009987 GO:0016043 GO:0016053 GO:0016491 GO:0016614 GO:0016615 GO:0016616 GO:0019752 GO:0022607 GO:0032787 GO:0042802 GO:0042803 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046872 GO:0046914 GO:0046983 GO:0050897 GO:0051259 GO:0051260 GO:0051262 GO:0051289 GO:0055114 GO:0065003 GO:0071704 GO:0071840 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00620 ko00710 ko01100 ko01120 ko01200 map00620 map00710 map01100 map01120 map01200

Pfam Domains

Protein Families

Malic_M malic

Protein Analysis

250

Amino Acids

27.77

Weight (kDa)

9.21

Isoelectric Point (pI)

46.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006459)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79750
fragaria_vesca	FvH4_6g32330 FvH4_6g32330 FvH4_6g32330
malus_domestica	MD09G1203300.v1.1 MD17G1184200.v1.1
prunus_persica	Prupe.3G059400_v2.0.a1 Prupe.3G059400_v2.0.a1 Prupe.3G059400_v2.0.a1
pyrus_communis	pycom09g12010 pycom17g19390
rosa_chinensis	RchiOBHm_Chr2g0140441
rosa_laevigata	RLG00000019867
rosa_multiflora	Rmu_sc0003516.1_g000006
rosa_roxburghii	Rroxscaffold_153G00436750 Rroxscaffold_2G00104830
rosa_rugosa	Rorug02G0362900 Rorug02G0363000 Rorug02G0363100 Rorug02G0363200 Rorug02G0363300
rosa_samantha	Rh2AG413500 Rh2BG423700 Rh2CG399700 Rh2DG433400
rosa_wichuraiana	Rw2G033890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	553
Acc65I	GGTACC	1 cut(s)	483
AccB1I	GGYRCC	2 cut(s)	291, 483
AciI	CCGC	2 cut(s)	556, 567
AclWI	GGATC	4 cut(s)	108, 200, 567, 580
AfaI	GTAC	5 cut(s)	39, 199, 217, 485, 628
AfiI	CCNNNNNNNGG	3 cut(s)	135, 419, 551
AgsI	TTSAA	5 cut(s)	142, 178, 430, 452, 700
AhlI	ACTAGT	3 cut(s)	194, 218, 623
AjnI	CCWGG	1 cut(s)	479
AluBI	AGCT	2 cut(s)	74, 730
AluI	AGCT	2 cut(s)	74, 730
Alw26I	GTCTC	3 cut(s)	185, 517, 614
AlwI	GGATC	4 cut(s)	108, 200, 567, 580
ApeKI	GCWGC	2 cut(s)	356, 563
Asp718I	GGTACC	1 cut(s)	483
BaeGI	GKGCMC	1 cut(s)	294
BamHI	GGATCC	1 cut(s)	572
BanI	GGYRCC	2 cut(s)	291, 483
BbsI	GAAGAC	2 cut(s)	579, 707
BbvI	GCAGC	2 cut(s)	368, 550
BciT130I	CCWGG	1 cut(s)	481
BclI	TGATCA	1 cut(s)	535
BcoDI	GTCTC	3 cut(s)	185, 517, 614
BcuI	ACTAGT	3 cut(s)	194, 218, 623
BfaI	CTAG	5 cut(s)	195, 219, 231, 396, 624
BfmI	CTRYAG	1 cut(s)	84
BfuAI	ACCTGC	1 cut(s)	553
BisI	GCNGC	4 cut(s)	357, 557, 564, 567
BlsI	GCNGC	4 cut(s)	358, 558, 565, 568
BmcAI	AGTACT	2 cut(s)	199, 628
Bme1390I	CCNGG	1 cut(s)	481
BmiI	GGNNCC	3 cut(s)	293, 485, 574
BmrFI	CCNGG	1 cut(s)	481
BpiI	GAAGAC	2 cut(s)	579, 707
BsaBI	GATNNNNATC	1 cut(s)	51
BsaWI	WCCGGW	1 cut(s)	646
Bsc4I	CCNNNNNNNGG	3 cut(s)	135, 419, 551
Bse1I	ACTGG	2 cut(s)	35, 327
Bse8I	GATNNNNATC	1 cut(s)	51
BseBI	CCWGG	1 cut(s)	481
BseJI	GATNNNNATC	1 cut(s)	51
BseLI	CCNNNNNNNGG	3 cut(s)	135, 419, 551
BseMII	CTCAG	2 cut(s)	375, 512
BseNI	ACTGG	2 cut(s)	35, 327
BseSI	GKGCMC	1 cut(s)	294
BseXI	GCAGC	2 cut(s)	368, 550
BsgI	GTGCAG	1 cut(s)	375
BshNI	GGYRCC	2 cut(s)	291, 483
BsiSI	CCGG	1 cut(s)	647
BslFI	GGGAC	1 cut(s)	724
BslI	CCNNNNNNNGG	3 cut(s)	135, 419, 551
BsmAI	GTCTC	3 cut(s)	185, 517, 614
BsmFI	GGGAC	1 cut(s)	724
BsmI	GAATGC	1 cut(s)	457
Bsp1286I	GDGCHC	1 cut(s)	294
Bsp143I	GATC	6 cut(s)	100, 130, 205, 535, 572, 712
BspACI	CCGC	2 cut(s)	556, 567
BspCNI	CTCAG	2 cut(s)	374, 513
BspHI	TCATGA	2 cut(s)	223, 715
BspLI	GGNNCC	3 cut(s)	293, 485, 574
BspMAI	CTGCAG	1 cut(s)	88
BspMI	ACCTGC	1 cut(s)	553
BspPI	GGATC	4 cut(s)	108, 200, 567, 580
BspT107I	GGYRCC	2 cut(s)	291, 483
BsrI	ACTGG	2 cut(s)	35, 327
BssMI	GATC	6 cut(s)	100, 130, 205, 535, 572, 712
Bst2UI	CCWGG	1 cut(s)	481
Bst4CI	ACNGT	1 cut(s)	272
BstC8I	GCNNGC	1 cut(s)	561
BstDEI	CTNAG	3 cut(s)	104, 361, 521
BstKTI	GATC	6 cut(s)	103, 133, 208, 538, 575, 715
BstMAI	GTCTC	3 cut(s)	185, 517, 614
BstMBI	GATC	6 cut(s)	100, 130, 205, 535, 572, 712
BstMWI	GCNNNNNNNGC	1 cut(s)	332
BstNI	CCWGG	1 cut(s)	481
BstSCI	CCNGG	1 cut(s)	479
BstSFI	CTRYAG	1 cut(s)	84
BstSLI	GKGCMC	1 cut(s)	294
BstV1I	GCAGC	2 cut(s)	368, 550
BstV2I	GAAGAC	2 cut(s)	579, 707
BstX2I	RGATCY	2 cut(s)	100, 572
BstXI	CCANNNNNNTGG	1 cut(s)	284
BstYI	RGATCY	2 cut(s)	100, 572
BtsI	GCAGTG	1 cut(s)	342
BtsIMutI	CAGTG	2 cut(s)	320, 342
BveI	ACCTGC	1 cut(s)	553
Cac8I	GCNNGC	1 cut(s)	561
CciI	TCATGA	2 cut(s)	223, 715
CseI	GACGC	1 cut(s)	157
Csp6I	GTAC	5 cut(s)	38, 198, 216, 484, 627
CviAII	CATG	6 cut(s)	224, 400, 419, 577, 607, 716
CviQI	GTAC	5 cut(s)	38, 198, 216, 484, 627
DdeI	CTNAG	3 cut(s)	104, 361, 521
DpnI	GATC	6 cut(s)	102, 132, 207, 537, 574, 714
DpnII	GATC	6 cut(s)	100, 130, 205, 535, 572, 712
EcoRII	CCWGG	1 cut(s)	479
FaeI	CATG	6 cut(s)	227, 403, 422, 580, 610, 719
FalI	AAGNNNNNCTT	2 cut(s)	719, 751
FaqI	GGGAC	1 cut(s)	724
FatI	CATG	6 cut(s)	223, 399, 418, 576, 606, 715
FbaI	TGATCA	1 cut(s)	535
Fnu4HI	GCNGC	4 cut(s)	357, 557, 564, 567
Fsp4HI	GCNGC	4 cut(s)	357, 557, 564, 567
FspBI	CTAG	5 cut(s)	195, 219, 231, 396, 624
GluI	GCNGC	4 cut(s)	357, 557, 564, 567
HapII	CCGG	1 cut(s)	647
HgaI	GACGC	1 cut(s)	157
Hin1II	CATG	6 cut(s)	227, 403, 422, 580, 610, 719
HindIII	AAGCTT	1 cut(s)	728
HinfI	GANTC	1 cut(s)	390
HpaII	CCGG	1 cut(s)	647
Hpy188I	TCNGA	6 cut(s)	130, 135, 190, 364, 522, 636
Hpy188III	TCNNGA	3 cut(s)	224, 619, 716
Hpy99I	CGWCG	1 cut(s)	173
HpyAV	CCTTC	2 cut(s)	486, 606
HpyCH4III	ACNGT	1 cut(s)	272
HpyCH4V	TGCA	7 cut(s)	86, 246, 356, 418, 457, 548, 724
HpyF10VI	GCNNNNNNNGC	1 cut(s)	332
HpyF3I	CTNAG	3 cut(s)	104, 361, 521
Hsp92II	CATG	6 cut(s)	227, 403, 422, 580, 610, 719
KpnI	GGTACC	1 cut(s)	487
Ksp22I	TGATCA	1 cut(s)	535
Kzo9I	GATC	6 cut(s)	100, 130, 205, 535, 572, 712
LmnI	GCTCC	1 cut(s)	79
Lsp1109I	GCAGC	2 cut(s)	368, 550
MaeI	CTAG	5 cut(s)	195, 219, 231, 396, 624
MaeIII	GTNAC	2 cut(s)	337, 438
MalI	GATC	6 cut(s)	102, 132, 207, 537, 574, 714
MboI	GATC	6 cut(s)	100, 130, 205, 535, 572, 712
MboII	GAAGA	4 cut(s)	56, 579, 582, 712
MfeI	CAATTG	1 cut(s)	549
MflI	RGATCY	2 cut(s)	100, 572
MhlI	GDGCHC	1 cut(s)	294
MluCI	AATT	5 cut(s)	247, 465, 514, 549, 660
MmeI	TCCRAC	1 cut(s)	141
MnlI	CCTC	6 cut(s)	119, 129, 281, 370, 659, 752
MslI	CAYNNNNRTG	1 cut(s)	297
MspA1I	CMGCKG	1 cut(s)	569
MspI	CCGG	1 cut(s)	647
MspR9I	CCNGG	1 cut(s)	481
MunI	CAATTG	1 cut(s)	549
Mva1269I	GAATGC	1 cut(s)	457
MvaI	CCWGG	1 cut(s)	481
MwoI	GCNNNNNNNGC	1 cut(s)	332
NdeII	GATC	6 cut(s)	100, 130, 205, 535, 572, 712
NlaIII	CATG	6 cut(s)	227, 403, 422, 580, 610, 719
NlaIV	GGNNCC	3 cut(s)	293, 485, 574
NmuCI	GTSAC	2 cut(s)	337, 438
PagI	TCATGA	2 cut(s)	223, 715
PcsI	WCGNNNNNNNCGW	2 cut(s)	168, 590
PctI	GAATGC	1 cut(s)	457
PfeI	GAWTC	1 cut(s)	390
PflFI	GACNNNGTC	1 cut(s)	167
PkrI	GCNGC	4 cut(s)	358, 558, 565, 568
Psp6I	CCWGG	1 cut(s)	479
PspGI	CCWGG	1 cut(s)	479
PspN4I	GGNNCC	3 cut(s)	293, 485, 574
PstI	CTGCAG	1 cut(s)	88
PsuI	RGATCY	2 cut(s)	100, 572
PsyI	GACNNNGTC	1 cut(s)	167
RsaI	GTAC	5 cut(s)	39, 199, 217, 485, 628
RsaNI	GTAC	5 cut(s)	38, 198, 216, 484, 627
RseI	CAYNNNNRTG	1 cut(s)	297
SatI	GCNGC	4 cut(s)	357, 557, 564, 567
Sau3AI	GATC	6 cut(s)	100, 130, 205, 535, 572, 712
ScaI	AGTACT	2 cut(s)	199, 628
ScrFI	CCNGG	1 cut(s)	481
SduI	GDGCHC	1 cut(s)	294
SetI	ASST	8 cut(s)	76, 140, 217, 440, 547, 617, 670, 732
SfcI	CTRYAG	1 cut(s)	84
SmiMI	CAYNNNNRTG	1 cut(s)	297
SpeI	ACTAGT	3 cut(s)	194, 218, 623
Sse9I	AATT	5 cut(s)	247, 465, 514, 549, 660
SsiI	CCGC	2 cut(s)	556, 567
SspMI	CTAG	5 cut(s)	195, 219, 231, 396, 624
StyD4I	CCNGG	1 cut(s)	479
TaaI	ACNGT	1 cut(s)	272
TaqI	TCGA	4 cut(s)	162, 171, 593, 618
TasI	AATT	5 cut(s)	247, 465, 514, 549, 660
TatI	WGTACW	2 cut(s)	197, 626
TauI	GCSGC	2 cut(s)	559, 569
TfiI	GAWTC	1 cut(s)	390
TscAI	CASTG	2 cut(s)	327, 342
TseFI	GTSAC	2 cut(s)	337, 438
TseI	GCWGC	2 cut(s)	356, 563
Tsp45I	GTSAC	2 cut(s)	337, 438
TspRI	CASTG	2 cut(s)	327, 342
Tth111I	GACNNNGTC	1 cut(s)	167
XspI	CTAG	5 cut(s)	195, 219, 231, 396, 624
ZrmI	AGTACT	2 cut(s)	199, 628

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.