pycom09g16340

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0010583
Physical Location & Seq
Reverse (-)
16584208 .. 16585192
985 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 690 bp
ATGGGAATCTTTGTGGCCAACTTGCCAGAGAAAGATCAAATGAATAATAACCAGGCAAGTCAATCTTCTTCAACCAAAATTGAAAGGAGGGTTGTAGAGAAGAATAGGAGAAATCTTATGAAACTTCTTTACTCCAACCTCTTCTCTCTCCTCCCTAACCAAAATCCTAAGGAGCCATTAACTCTGCCCGAACAAATAGATGAGGCCATCAACTACATAAAAAGCAAAGAGTCGAAGCTGCAGAAATCAAGGGAGAAGAAGGAGAGTTTGGTGGGCACTAGAAAAAGATCACATGCTACATCATTCATAAATGCTGAGAGCATGGAACCAAAAAACTTAAGTATTGAGAGCGTAAGGAGCACAAAAGCACCCCAAATCCAAATCCATGAGACAGGCTCCACAGTAGAGGTGGTACTGACTACTGGCTTAGACAATCATCAGTTCATCTTCTACGAAATTCTTCGCATACTTGACGAAGAACAGGTGGACGTCGTGCATGCTAGCTTTTCAACTTTGGGAGACACTGTATTTCATGTAGTACGTGCAGAGATGCGCAAGTCTGTGTTGGATTTTGGGGCTGCAAGAATAACTGAAAAGCTTAATAGATTTGTCAATGGATCCACCAGAGACCAAGAATTACAGCAAGATTGCTTTTGGGACTTCGAATTGGAGCCTGTGGCAATAATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HLH

Protein Analysis

230

Amino Acids

26.22

Weight (kDa)

6.25

Isoelectric Point (pI)

48.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 28 - 75 4.9e-06 Helix-loop-helix DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 492
Acc16I TGCGCA 1 cut(s) 554
AclWI GGATC 2 cut(s) 612, 625
AcoI YGGCCR 1 cut(s) 15
AcsI RAATTY 1 cut(s) 456
AcyI GRCGYC 1 cut(s) 489
AfaI GTAC 2 cut(s) 414, 540
AflII CTTAAG 1 cut(s) 337
AgsI TTSAA 3 cut(s) 72, 83, 510
AjnI CCWGG 1 cut(s) 51
AjuI GAANNNNNNNTTGG 2 cut(s) 251, 283
AluBI AGCT 3 cut(s) 238, 504, 598
AluI AGCT 3 cut(s) 238, 504, 598
Alw21I GWGCWC 1 cut(s) 362
Alw26I GTCTC 3 cut(s) 383, 513, 621
AlwI GGATC 2 cut(s) 612, 625
AoxI GGCC 2 cut(s) 15, 204
ApeKI GCWGC 2 cut(s) 238, 578
ApoI RAATTY 1 cut(s) 456
Asp700I GAANNNNTTC 1 cut(s) 459
AspLEI GCGC 1 cut(s) 555
AsuII TTCGAA 1 cut(s) 663
AsuNHI GCTAGC 1 cut(s) 500
AxyI CCTNAGG 1 cut(s) 168
BaeGI GKGCMC 1 cut(s) 278
BalI TGGCCA 1 cut(s) 17
BamHI GGATCC 1 cut(s) 617
Bbv12I GWGCWC 1 cut(s) 362
BbvI GCAGC 2 cut(s) 225, 565
BccI CCATC 1 cut(s) 215
BciT130I CCWGG 1 cut(s) 53
BcoDI GTCTC 3 cut(s) 383, 513, 621
BfaI CTAG 2 cut(s) 279, 501
BfmI CTRYAG 1 cut(s) 239
BfrI CTTAAG 1 cut(s) 337
BisI GCNGC 2 cut(s) 239, 579
BlsI GCNGC 2 cut(s) 240, 580
Bme1390I CCNGG 1 cut(s) 53
BmiI GGNNCC 5 cut(s) 174, 327, 397, 619, 672
BmrFI CCNGG 1 cut(s) 53
BmsI GCATC 1 cut(s) 540
BmtI GCTAGC 1 cut(s) 504
BplI GAGNNNNNCTC 2 cut(s) 380, 412
Bpu14I TTCGAA 1 cut(s) 663
BsaAI YACGTR 1 cut(s) 542
BsaHI GRCGYC 1 cut(s) 489
BsaI GGTCTC 1 cut(s) 621
BsaXI ACNNNNNCTCC 2 cut(s) 510, 540
Bse1I ACTGG 1 cut(s) 427
Bse21I CCTNAGG 1 cut(s) 168
BseBI CCWGG 1 cut(s) 53
BseMII CTCAG 1 cut(s) 306
BseNI ACTGG 1 cut(s) 427
BseRI GAGGAG 1 cut(s) 140
BseSI GKGCMC 1 cut(s) 278
BseXI GCAGC 2 cut(s) 225, 565
BsgI GTGCAG 1 cut(s) 564
BshFI GGCC 2 cut(s) 17, 206
BsiHKAI GWGCWC 1 cut(s) 362
BslFI GGGAC 1 cut(s) 671
BsmAI GTCTC 3 cut(s) 383, 513, 621
BsmFI GGGAC 1 cut(s) 671
BsnI GGCC 2 cut(s) 17, 206
Bso31I GGTCTC 1 cut(s) 621
Bsp119I TTCGAA 1 cut(s) 663
Bsp1286I GDGCHC 2 cut(s) 278, 362
Bsp143I GATC 3 cut(s) 34, 287, 617
BspANI GGCC 2 cut(s) 17, 206
BspCNI CTCAG 1 cut(s) 307
BspLI GGNNCC 5 cut(s) 174, 327, 397, 619, 672
BspMAI CTGCAG 1 cut(s) 243
BspOI GCTAGC 1 cut(s) 504
BspPI GGATC 2 cut(s) 612, 625
BspT104I TTCGAA 1 cut(s) 663
BspTI CTTAAG 1 cut(s) 337
BspTNI GGTCTC 1 cut(s) 621
BsrI ACTGG 1 cut(s) 427
BssMI GATC 3 cut(s) 34, 287, 617
BssNI GRCGYC 1 cut(s) 489
Bst2UI CCWGG 1 cut(s) 53
Bst4CI ACNGT 2 cut(s) 403, 526
Bst6I CTCTTC 1 cut(s) 146
BstACI GRCGYC 1 cut(s) 489
BstAFI CTTAAG 1 cut(s) 337
BstBAI YACGTR 1 cut(s) 542
BstBI TTCGAA 1 cut(s) 663
BstC8I GCNNGC 2 cut(s) 498, 502
BstDEI CTNAG 3 cut(s) 168, 315, 427
BstHHI GCGC 1 cut(s) 555
BstKTI GATC 3 cut(s) 37, 290, 620
BstMAI GTCTC 3 cut(s) 383, 513, 621
BstMBI GATC 3 cut(s) 34, 287, 617
BstMWI GCNNNNNNNGC 1 cut(s) 357
BstNI CCWGG 1 cut(s) 53
BstNSI RCATGY 2 cut(s) 296, 500
BstSCI CCNGG 1 cut(s) 51
BstSFI CTRYAG 1 cut(s) 239
BstSLI GKGCMC 1 cut(s) 278
BstV1I GCAGC 2 cut(s) 225, 565
BstX2I RGATCY 1 cut(s) 617
BstYI RGATCY 1 cut(s) 617
Bsu36I CCTNAGG 1 cut(s) 168
BsuRI GGCC 2 cut(s) 17, 206
BtsIMutI CAGTG 1 cut(s) 522
Cac8I GCNNGC 2 cut(s) 498, 502
CfoI GCGC 1 cut(s) 555
Csp6I GTAC 2 cut(s) 413, 539
CviAII CATG 5 cut(s) 293, 322, 386, 497, 533
CviQI GTAC 2 cut(s) 413, 539
DdeI CTNAG 3 cut(s) 168, 315, 427
DpnI GATC 3 cut(s) 36, 289, 619
DpnII GATC 3 cut(s) 34, 287, 617
EaeI YGGCCR 1 cut(s) 15
Eam1104I CTCTTC 1 cut(s) 146
EarI CTCTTC 1 cut(s) 146
Eco31I GGTCTC 1 cut(s) 621
Eco81I CCTNAGG 1 cut(s) 168
EcoRII CCWGG 1 cut(s) 51
FaeI CATG 5 cut(s) 296, 325, 389, 500, 536
FalI AAGNNNNNCTT 2 cut(s) 49, 81
FaqI GGGAC 1 cut(s) 671
FatI CATG 5 cut(s) 292, 321, 385, 496, 532
Fnu4HI GCNGC 2 cut(s) 239, 579
Fsp4HI GCNGC 2 cut(s) 239, 579
FspBI CTAG 2 cut(s) 279, 501
FspI TGCGCA 1 cut(s) 554
GlaI GCGC 1 cut(s) 554
GluI GCNGC 2 cut(s) 239, 579
HaeIII GGCC 2 cut(s) 17, 206
HhaI GCGC 1 cut(s) 555
Hin1I GRCGYC 1 cut(s) 489
Hin1II CATG 5 cut(s) 296, 325, 389, 500, 536
Hin6I GCGC 1 cut(s) 553
HinP1I GCGC 1 cut(s) 553
HindIII AAGCTT 1 cut(s) 596
HinfI GANTC 2 cut(s) 6, 230
Hpy166II GTNNAC 1 cut(s) 487
Hpy8I GTNNAC 1 cut(s) 487
Hpy99I CGWCG 1 cut(s) 494
HpyAV CCTTC 1 cut(s) 253
HpyCH4III ACNGT 2 cut(s) 403, 526
HpyCH4IV ACGT 2 cut(s) 489, 541
HpyCH4V TGCA 4 cut(s) 241, 496, 545, 581
HpyF10VI GCNNNNNNNGC 1 cut(s) 357
HpyF3I CTNAG 3 cut(s) 168, 315, 427
HpySE526I ACGT 2 cut(s) 489, 541
Hsp92I GRCGYC 1 cut(s) 489
Hsp92II CATG 5 cut(s) 296, 325, 389, 500, 536
HspAI GCGC 1 cut(s) 553
Kzo9I GATC 3 cut(s) 34, 287, 617
LmnI GCTCC 4 cut(s) 172, 357, 401, 670
LpnPI CCDG 7 cut(s) 38, 39, 65, 378, 408, 467, 637
Lsp1109I GCAGC 2 cut(s) 225, 565
LweI GCATC 1 cut(s) 540
MaeI CTAG 2 cut(s) 279, 501
MaeII ACGT 2 cut(s) 489, 541
MalI GATC 3 cut(s) 36, 289, 619
MboI GATC 3 cut(s) 34, 287, 617
MboII GAAGA 8 cut(s) 57, 60, 112, 133, 268, 439, 452, 488
MflI RGATCY 1 cut(s) 617
MhlI GDGCHC 2 cut(s) 278, 362
MlsI TGGCCA 1 cut(s) 17
MluCI AATT 4 cut(s) 78, 456, 635, 665
MluNI TGGCCA 1 cut(s) 17
MlyI GAGTC 1 cut(s) 239
MmeI TCCRAC 2 cut(s) 159, 546
MnlI CCTC 5 cut(s) 81, 149, 161, 196, 400
Mox20I TGGCCA 1 cut(s) 17
MroXI GAANNNNTTC 1 cut(s) 459
MscI TGGCCA 1 cut(s) 17
MseI TTAA 3 cut(s) 179, 338, 600
Msp20I TGGCCA 1 cut(s) 17
MspCI CTTAAG 1 cut(s) 337
MspR9I CCNGG 1 cut(s) 53
MvaI CCWGG 1 cut(s) 53
MwoI GCNNNNNNNGC 1 cut(s) 357
NdeII GATC 3 cut(s) 34, 287, 617
NheI GCTAGC 1 cut(s) 500
NlaIII CATG 5 cut(s) 296, 325, 389, 500, 536
NlaIV GGNNCC 5 cut(s) 174, 327, 397, 619, 672
NsbI TGCGCA 1 cut(s) 554
NspI RCATGY 2 cut(s) 296, 500
NspV TTCGAA 1 cut(s) 663
PaeI GCATGC 1 cut(s) 500
PdmI GAANNNNTTC 1 cut(s) 459
PfeI GAWTC 1 cut(s) 6
PkrI GCNGC 2 cut(s) 240, 580
PleI GAGTC 1 cut(s) 238
PpsI GAGTC 1 cut(s) 238
Ppu21I YACGTR 1 cut(s) 542
Psp6I CCWGG 1 cut(s) 51
PspGI CCWGG 1 cut(s) 51
PspN4I GGNNCC 5 cut(s) 174, 327, 397, 619, 672
PstI CTGCAG 1 cut(s) 243
PsuI RGATCY 1 cut(s) 617
RsaI GTAC 2 cut(s) 414, 540
RsaNI GTAC 2 cut(s) 413, 539
SaqAI TTAA 3 cut(s) 179, 338, 600
SatI GCNGC 2 cut(s) 239, 579
Sau3AI GATC 3 cut(s) 34, 287, 617
SchI GAGTC 1 cut(s) 239
ScrFI CCNGG 1 cut(s) 53
SduI GDGCHC 2 cut(s) 278, 362
SetI ASST 8 cut(s) 141, 240, 411, 486, 492, 506, 544, 600
SfaNI GCATC 1 cut(s) 540
SfcI CTRYAG 1 cut(s) 239
SfuI TTCGAA 1 cut(s) 663
SmlI CTYRAG 1 cut(s) 337
SmoI CTYRAG 1 cut(s) 337
SphI GCATGC 1 cut(s) 500
Sse9I AATT 4 cut(s) 78, 456, 635, 665
SspMI CTAG 2 cut(s) 279, 501
StyD4I CCNGG 1 cut(s) 51
TaaI ACNGT 2 cut(s) 403, 526
TaiI ACGT 2 cut(s) 492, 544
TaqI TCGA 2 cut(s) 233, 663
TasI AATT 4 cut(s) 78, 456, 635, 665
TfiI GAWTC 1 cut(s) 6
Tru1I TTAA 3 cut(s) 179, 338, 600
Tru9I TTAA 3 cut(s) 179, 338, 600
TscAI CASTG 1 cut(s) 529
TseI GCWGC 2 cut(s) 238, 578
TspDTI ATGAA 5 cut(s) 56, 134, 295, 433, 521
TspRI CASTG 1 cut(s) 529
Vha464I CTTAAG 1 cut(s) 337
XapI RAATTY 1 cut(s) 456
XceI RCATGY 2 cut(s) 296, 500
XcmI CCANNNNNNNNNTGG 1 cut(s) 406
XmnI GAANNNNTTC 1 cut(s) 459
XspI CTAG 2 cut(s) 279, 501
ZraI GACGTC 1 cut(s) 490
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.