pycom10g00920

proline-rich receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0013267
Physical Location & Seq
Reverse (-)
991600 .. 992749
1150 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1077 bp
ATGGGAAGTGTTTTCCAATGCAAACAAACCCCTTTCCTTCCCAATGGGCATTCAGATTCACCACCTTCTCCACAACAATTCAATTTTCGTCTACCACATTACAGACTTAATTTACAATATAAGATGGCCAATCCAAATACAACTCCACCACCAACTTCAGCAGCAAAGCCGCCAAGTTACTCAACCCCACCACCACCGTCCCCGGGGGCAAAGCCTCCAAGTCACTCAACCCCACCGCCAACTCCATCAGCAAAACCACCAAGTCAATCAACCCCACCACCACCTCTGGCTGCGAAGCCACCACGTCCGTCAATCCCACCGCCACCTCCGTCAACAAAGCCGCCACGTCCATCAATCCCACCACCACCACCACCTCCGGCTGCGAAGCCACCACCTCCGTCAATCCCACCGCCACCTCCGTCAGCAAAGCCGCCACGTCCATCAATCCCACCACCACCACCCCCGGGGGCAAAACCTCCAAGCCCCTCAACCCCACCGCCACCACCATATCAACCATTTAGGCCACCGCCCCCACCTCATGTACATCCTCCGCCACCGCAGCTGCCACCACCATCCCCATCACCGGACAATAATCCCACCGTCATAGTCATTGTGTTCATCTCATTCGGTTCTGTTTTCTTCCTTGCATTCCTTGCAGTTTCCCTGCTTTGTTTCATCAAGAGGAGAAAGAAGAAGACAATCCAAGAAACCAACTTCATTCACATTGACAAACACCGGAAGATGAAGGAAGCAATTGTAGAAGGTCCCAACGGACCGCAAGCCGTGGTGTTGTCGGTCGAGGATGATGTCCACGTCGACGAGGAGATAAGGAAGAATGAGACAATTGCTCACGAGGGGTTGCATGGAGAAGTAAAGAGTTCAGATGTCCAGTCGGATACTGAAATCATTAACGTCGGCGAACATCGGAACGTGAAGGAAGACATAGAAGGTCCGCATGGATCGAAAGCTGTGGTGTTAACAGTCAAAGACGATGTTCATATCGATGAAATAATAAGGAAGAACGAGAAGGTTGGTAAAGGTTTGCATGGCAATGCAGAGGCAGTGAAAATTGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

359

Amino Acids

38.43

Weight (kDa)

9.44

Isoelectric Point (pI)

70.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013267)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G43790
fragaria_vesca FvH4_2g14670
malus_domestica MD05G1014900.v1.1 MD10G1014900.v1.1
prunus_persica Prupe.8G018800_v2.0.a1
pyrus_communis pycom05g00820 pycom10g00920
rosa_chinensis RchiOBHm_Chr6g0277141
rosa_laevigata RLG00000013328
rosa_multiflora Rmu_sc0003539.1_g000022 Rmu_sc0006244.1_g000041
rosa_roxburghii Rroxscaffold_7G00191570
rosa_rugosa Rorug06G0106500
rosa_samantha Rh6AG217300 Rh6BG221300 Rh6CG224200 Rh6DG213900
rosa_wichuraiana Rw6G018970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 91, 816
AclWI GGATC 1 cut(s) 967
AcoI YGGCCR 1 cut(s) 126
AcuI CTGAAG 1 cut(s) 141
AfaI GTAC 1 cut(s) 543
AfiI CCNNNNNNNGG 3 cut(s) 203, 464, 583
AgsI TTSAA 1 cut(s) 82
AjiI CACGTC 4 cut(s) 305, 347, 437, 814
AluBI AGCT 2 cut(s) 562, 968
AluI AGCT 2 cut(s) 562, 968
Alw26I GTCTC 1 cut(s) 833
AlwI GGATC 1 cut(s) 967
Ama87I CYCGRG 2 cut(s) 202, 463
AoxI GGCC 2 cut(s) 126, 521
ApeKI GCWGC 5 cut(s) 161, 290, 380, 559, 562
AspS9I GGNCC 3 cut(s) 764, 773, 950
AsuC2I CCSGG 4 cut(s) 203, 204, 464, 465
AsuHPI GGTGA 2 cut(s) 51, 573
AvaI CYCGRG 2 cut(s) 202, 463
AvaII GGWCC 3 cut(s) 764, 773, 950
BalI TGGCCA 1 cut(s) 128
BauI CACGAG 1 cut(s) 851
BbsI GAAGAC 2 cut(s) 701, 945
BbvI GCAGC 5 cut(s) 173, 277, 367, 549, 571
BccI CCATC 6 cut(s) 118, 253, 358, 448, 580, 586
BceAI ACGGC 1 cut(s) 767
BciVI GTATCC 1 cut(s) 889
BcnI CCSGG 4 cut(s) 203, 204, 464, 465
BcoDI GTCTC 1 cut(s) 833
BfuI GTATCC 1 cut(s) 889
BisI GCNGC 8 cut(s) 162, 170, 291, 341, 381, 431, 560, 563
BlsI GCNGC 8 cut(s) 163, 171, 292, 342, 382, 432, 561, 564
Bme1390I CCNGG 4 cut(s) 203, 204, 464, 465
Bme18I GGWCC 3 cut(s) 764, 773, 950
BmeT110I CYCGRG 2 cut(s) 202, 463
BmgBI CACGTC 4 cut(s) 305, 347, 437, 814
BmgT120I GGNCC 3 cut(s) 764, 773, 950
BmiI GGNNCC 1 cut(s) 766
BmrFI CCNGG 4 cut(s) 203, 204, 464, 465
BpiI GAAGAC 2 cut(s) 701, 945
BpuMI CCSGG 4 cut(s) 203, 204, 464, 465
Bsa29I ATCGAT 1 cut(s) 1002
BsaJI CCNNGG 7 cut(s) 201, 202, 203, 462, 463, 464, 783
BsaWI WCCGGW 2 cut(s) 583, 735
Bsc4I CCNNNNNNNGG 3 cut(s) 203, 464, 583
Bse1I ACTGG 1 cut(s) 889
Bse3DI GCAATG 1 cut(s) 1057
BseCI ATCGAT 1 cut(s) 1002
BseDI CCNNGG 7 cut(s) 201, 202, 203, 462, 463, 464, 783
BseGI GGATG 3 cut(s) 544, 572, 808
BseLI CCNNNNNNNGG 3 cut(s) 203, 464, 583
BseMI GCAATG 1 cut(s) 1057
BseNI ACTGG 1 cut(s) 889
BseRI GAGGAG 2 cut(s) 697, 836
BseXI GCAGC 5 cut(s) 173, 277, 367, 549, 571
Bsh1285I CGRYCG 1 cut(s) 798
BshFI GGCC 2 cut(s) 128, 523
BshVI ATCGAT 1 cut(s) 1002
BsiEI CGRYCG 1 cut(s) 798
BsiHKCI CYCGRG 2 cut(s) 202, 463
BsiSI CCGG 5 cut(s) 203, 377, 464, 584, 736
BslFI GGGAC 2 cut(s) 184, 750
BslI CCNNNNNNNGG 3 cut(s) 203, 464, 583
BsmAI GTCTC 1 cut(s) 833
BsmFI GGGAC 2 cut(s) 184, 750
BsmI GAATGC 2 cut(s) 49, 647
BsnI GGCC 2 cut(s) 128, 523
BsoBI CYCGRG 2 cut(s) 202, 463
Bsp1407I TGTACA 1 cut(s) 541
Bsp143I GATC 1 cut(s) 959
BspANI GGCC 2 cut(s) 128, 523
BspDI ATCGAT 1 cut(s) 1002
BspLI GGNNCC 1 cut(s) 766
BspPI GGATC 1 cut(s) 967
BsrDI GCAATG 1 cut(s) 1057
BsrGI TGTACA 1 cut(s) 541
BsrI ACTGG 1 cut(s) 889
BssECI CCNNGG 7 cut(s) 201, 202, 203, 462, 463, 464, 783
BssMI GATC 1 cut(s) 959
BssSI CACGAG 1 cut(s) 851
Bst2BI CACGAG 1 cut(s) 851
Bst4CI ACNGT 3 cut(s) 198, 601, 982
BstAPI GCANNNNNTGC 1 cut(s) 653
BstAUI TGTACA 1 cut(s) 541
BstC8I GCNNGC 1 cut(s) 780
BstDSI CCRYGG 1 cut(s) 783
BstF5I GGATG 3 cut(s) 544, 572, 808
BstKTI GATC 1 cut(s) 962
BstMAI GTCTC 1 cut(s) 833
BstMBI GATC 1 cut(s) 959
BstMCI CGRYCG 1 cut(s) 798
BstMWI GCNNNNNNNGC 2 cut(s) 559, 653
BstSCI CCNGG 4 cut(s) 201, 202, 462, 463
BstV1I GCAGC 5 cut(s) 173, 277, 367, 549, 571
BstV2I GAAGAC 2 cut(s) 701, 945
Bsu15I ATCGAT 1 cut(s) 1002
BsuI GTATCC 1 cut(s) 889
BsuRI GGCC 2 cut(s) 128, 523
BsuTUI ATCGAT 1 cut(s) 1002
BtgI CCRYGG 1 cut(s) 783
BtrI CACGTC 4 cut(s) 305, 347, 437, 814
BtsCI GGATG 3 cut(s) 544, 572, 808
BtsI GCAGTG 1 cut(s) 1068
BtsIMutI CAGTG 1 cut(s) 1068
Cac8I GCNNGC 1 cut(s) 780
Cfr13I GGNCC 3 cut(s) 764, 773, 950
Cfr9I CCCGGG 2 cut(s) 202, 463
ClaI ATCGAT 1 cut(s) 1002
CpoI CGGWCCG 1 cut(s) 773
Csp6I GTAC 1 cut(s) 542
CspI CGGWCCG 1 cut(s) 773
CviAII CATG 4 cut(s) 539, 863, 956, 1046
CviQI GTAC 1 cut(s) 542
DpnI GATC 1 cut(s) 961
DpnII GATC 1 cut(s) 959
EaeI YGGCCR 1 cut(s) 126
EciI GGCGGA 1 cut(s) 540
Eco47I GGWCC 3 cut(s) 764, 773, 950
Eco57I CTGAAG 1 cut(s) 141
Eco88I CYCGRG 2 cut(s) 202, 463
EcoO109I RGGNCCY 1 cut(s) 764
FaeI CATG 4 cut(s) 542, 866, 959, 1049
FaiI YATR 9 cut(s) 120, 508, 540, 605, 864, 944, 957, 999, 1047
FaqI GGGAC 2 cut(s) 184, 750
FatI CATG 4 cut(s) 538, 862, 955, 1045
FblI GTMKAC 2 cut(s) 91, 816
Fnu4HI GCNGC 8 cut(s) 162, 170, 291, 341, 381, 431, 560, 563
FokI GGATG 3 cut(s) 531, 559, 815
Fsp4HI GCNGC 8 cut(s) 162, 170, 291, 341, 381, 431, 560, 563
GluI GCNGC 8 cut(s) 162, 170, 291, 341, 381, 431, 560, 563
HaeIII GGCC 2 cut(s) 128, 523
HapII CCGG 5 cut(s) 203, 377, 464, 584, 736
Hin1II CATG 4 cut(s) 542, 866, 959, 1049
HincII GTYRAC 3 cut(s) 333, 817, 978
HindII GTYRAC 3 cut(s) 333, 817, 978
HinfI GANTC 1 cut(s) 56
HpaI GTTAAC 1 cut(s) 978
HpaII CCGG 5 cut(s) 203, 377, 464, 584, 736
HphI GGTGA 2 cut(s) 51, 573
Hpy166II GTNNAC 5 cut(s) 92, 333, 811, 817, 978
Hpy188I TCNGA 4 cut(s) 55, 883, 895, 927
Hpy188III TCNNGA 2 cut(s) 679, 851
Hpy8I GTNNAC 5 cut(s) 92, 333, 811, 817, 978
Hpy99I CGWCG 3 cut(s) 818, 821, 917
HpyAV CCTTC 7 cut(s) 47, 75, 739, 755, 928, 941, 1021
HpyCH4III ACNGT 3 cut(s) 198, 601, 982
HpyCH4IV ACGT 6 cut(s) 304, 346, 436, 813, 912, 930
HpyCH4V TGCA 6 cut(s) 21, 647, 656, 862, 1045, 1055
HpyF10VI GCNNNNNNNGC 2 cut(s) 559, 653
HpySE526I ACGT 6 cut(s) 304, 346, 436, 813, 912, 930
Hsp92II CATG 4 cut(s) 542, 866, 959, 1049
KspAI GTTAAC 1 cut(s) 978
Kzo9I GATC 1 cut(s) 959
LpnPI CCDG 8 cut(s) 216, 272, 390, 477, 597, 677, 749, 902
Lsp1109I GCAGC 5 cut(s) 173, 277, 367, 549, 571
MaeII ACGT 6 cut(s) 304, 346, 436, 813, 912, 930
MaeIII GTNAC 2 cut(s) 176, 221
MalI GATC 1 cut(s) 961
MboI GATC 1 cut(s) 959
MboII GAAGA 7 cut(s) 631, 703, 706, 751, 844, 950, 1030
MfeI CAATTG 2 cut(s) 753, 843
MlsI TGGCCA 1 cut(s) 128
MluCI AATT 6 cut(s) 77, 82, 109, 753, 843, 1068
MluNI TGGCCA 1 cut(s) 128
MmeI TCCRAC 1 cut(s) 873
Mox20I TGGCCA 1 cut(s) 128
MscI TGGCCA 1 cut(s) 128
MseI TTAA 3 cut(s) 108, 909, 977
MslI CAYNNNNRTG 2 cut(s) 1002, 1050
Msp20I TGGCCA 1 cut(s) 128
MspA1I CMGCKG 1 cut(s) 562
MspI CCGG 5 cut(s) 203, 377, 464, 584, 736
MspR9I CCNGG 4 cut(s) 203, 204, 464, 465
MunI CAATTG 2 cut(s) 753, 843
Mva1269I GAATGC 2 cut(s) 49, 647
MwoI GCNNNNNNNGC 2 cut(s) 559, 653
NciI CCSGG 4 cut(s) 203, 204, 464, 465
NdeII GATC 1 cut(s) 959
NlaIII CATG 4 cut(s) 542, 866, 959, 1049
NlaIV GGNNCC 1 cut(s) 766
NmuCI GTSAC 1 cut(s) 221
PctI GAATGC 2 cut(s) 49, 647
PfeI GAWTC 1 cut(s) 56
PkrI GCNGC 8 cut(s) 163, 171, 292, 342, 382, 432, 561, 564
PpuMI RGGWCCY 1 cut(s) 764
Psp5II RGGWCCY 1 cut(s) 764
PspN4I GGNNCC 1 cut(s) 766
PspPI GGNCC 3 cut(s) 764, 773, 950
PspPPI RGGWCCY 1 cut(s) 764
PvuII CAGCTG 1 cut(s) 562
RsaI GTAC 1 cut(s) 543
RsaNI GTAC 1 cut(s) 542
RseI CAYNNNNRTG 2 cut(s) 1002, 1050
Rsr2I CGGWCCG 1 cut(s) 773
RsrII CGGWCCG 1 cut(s) 773
SalI GTCGAC 1 cut(s) 815
SaqAI TTAA 3 cut(s) 108, 909, 977
SatI GCNGC 8 cut(s) 162, 170, 291, 341, 381, 431, 560, 563
Sau3AI GATC 1 cut(s) 959
Sau96I GGNCC 3 cut(s) 764, 773, 950
ScrFI CCNGG 4 cut(s) 203, 204, 464, 465
SgrDI CGTCGACG 1 cut(s) 815
SinI GGWCC 3 cut(s) 764, 773, 950
SmaI CCCGGG 2 cut(s) 204, 465
SmiMI CAYNNNNRTG 2 cut(s) 1002, 1050
Sse9I AATT 6 cut(s) 77, 82, 109, 753, 843, 1068
StyD4I CCNGG 4 cut(s) 201, 202, 462, 463
TaaI ACNGT 3 cut(s) 198, 601, 982
TaiI ACGT 6 cut(s) 307, 349, 439, 816, 915, 933
TaqI TCGA 4 cut(s) 798, 816, 962, 1002
TaqII GACCGA 1 cut(s) 784
TasI AATT 6 cut(s) 77, 82, 109, 753, 843, 1068
TatI WGTACW 1 cut(s) 541
TauI GCSGC 3 cut(s) 172, 343, 433
TfiI GAWTC 1 cut(s) 56
Tru1I TTAA 3 cut(s) 108, 909, 977
Tru9I TTAA 3 cut(s) 108, 909, 977
TscAI CASTG 1 cut(s) 1068
TseFI GTSAC 1 cut(s) 221
TseI GCWGC 5 cut(s) 161, 290, 380, 559, 562
Tsp45I GTSAC 1 cut(s) 221
TspDTI ATGAA 6 cut(s) 607, 664, 706, 758, 986, 1020
TspGWI ACGGA 5 cut(s) 297, 318, 387, 408, 786
TspMI CCCGGG 2 cut(s) 202, 463
TspRI CASTG 1 cut(s) 1068
VpaK11BI GGWCC 3 cut(s) 764, 773, 950
XmaI CCCGGG 2 cut(s) 202, 463
XmiI GTMKAC 2 cut(s) 91, 816
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.