Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0004220

Physical Location & Seq

Genomic Coordinates Reverse (-)

3314646 .. 3316547

Gene Structure 1902 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGGTTGATTACGGTAAGACCTATCTTCTCCGGGTAATCAACGCCGTGATGAACGAAGAACAGTTTTTCGCCATCGCGAACCACACCCTCACAGTCGTAGCACAAGATGCTTCATACATAAAACCTATAAACACCACTTACATCATGATAACTCCAGGCCAAACCATGGACATTTTAGTAACCGCAAACCAACCTCCCAGCCAGTATTACATGGCTTCTCATCCTTTTATGGATGGAACTAATGTTACACATAACAACAGCACCACCAGTGCAATTGTTCAATATAACGGCAACTACAGCATCCCATCAATCACTCCCTTTCCAACTCTTCCGGCGGAAGCCGATACAACTGCTGCTGATAACTTCACTAAGCAAATCAGGGCCTTGGCAAGCAAAGAGCACCCTATTGATGTCCCACTCGAAATTCAATCCAGGATCTTTATAACTATTGCAATGAATGAAAGAATTTGTGCTAATTCTTCATGTGAAGGCCCGAATAATAATGCACTTTCTGCAAGCTTAAACAATATCAGTTTCGTGATTCCATCTGTTTATGTACTGCAAGCATACTATTGGGGAAATAACAGTGGAGTTTACAGTTCTAATTTCCCGGACAATCCGCCTAATCCTTTCAACTACACTGGAGACGTGGGTAACAACACAATATATTCGGACTTTGGGACGAGGGTGAGGATGATCGATTATGGTGAAGGAGTTGAGATCATCTTCCAAGGAACCAACATCATCACACCCGAGAACCATCCAATGCATCTCCATGGTTTCAGCTTCTATTTGGTCGGAACTGGTTCCGGAAATTTTAACAATACAACATCACCCAAGACCTACAATTTGATCGATCCCCCAGAAGTTAACACCATTGGAGTTCCAAAGAATGGATGGGCAACCATTAGGTTTAAAGCCGATAATCCTGGAGTATGGTTTGTGCATTGCCACTTGGAAAGACATACCAGCTGGGGAATGGATACTGTGCTCATAGTTAGGAATGGAAATACCACAGAAACCAGCATTCGCCCACCGCCAGCTTATATGCCTCCTTGTTCCAAGTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

357

Amino Acids

39.37

Weight (kDa)

5.5

Isoelectric Point (pI)

29.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu-oxidase	PF00394	2 - 98	2.3e-28	Multicopper oxidase
Cu-oxidase_2	PF07731	203 - 336	4.3e-39	Multicopper oxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004220)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g12610 FvH4_2g12610 FvH4_2g21650
malus_domestica	MD00G1014800.v1.1 MD00G1190700.v1.1 MD02G1264400.v1.1 MD10G1042600.v1.1
prunus_persica	Prupe.8G047100_v2.0.a1 Prupe.8G047200_v2.0.a1 Prupe.8G047300_v2.0.a1 Prupe.8G047500_v2.0.a1 Prupe.8G047500_v2.0.a1 Prupe.8G047900_v2.0.a1 Prupe.8G048100_v2.0.a1
pyrus_communis	pycom05g02900 pycom10g02970
rosa_chinensis	RchiOBHm_Chr6g0273201 RchiOBHm_Chr6g0288321
rosa_laevigata	RLG00000012414 RLG00000013632 RLG00000013639
rosa_multiflora	Rmu_sc0000239.1_g000090
rosa_roxburghii	Rroxscaffold_7G00180140 Rroxscaffold_7G00195550
rosa_rugosa	Rorug06G0073100 Rorug06G0195600
rosa_samantha	Rh6BG192200 Rh6BG312600 Rh6CG191600 Rh6CG320400 Rh6DG183000 Rh6DG305600
rosa_wichuraiana	Rw6G016390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	443
AccB7I	CCANNNNNTGG	2 cut(s)	166, 893
AccII	CGCG	1 cut(s)	77
AccIII	TCCGGA	1 cut(s)	809
AciI	CCGC	4 cut(s)	183, 335, 620, 1037
AclWI	GGATC	2 cut(s)	443, 851
AcsI	RAATTY	3 cut(s)	423, 465, 814
AfaI	GTAC	1 cut(s)	558
AfiI	CCNNNNNNNGG	2 cut(s)	166, 893
AgsI	TTSAA	3 cut(s)	281, 428, 634
AjiI	CACGTC	1 cut(s)	649
AjnI	CCWGG	3 cut(s)	154, 431, 928
AluBI	AGCT	4 cut(s)	519, 786, 972, 1043
AluI	AGCT	4 cut(s)	519, 786, 972, 1043
Alw21I	GWGCWC	2 cut(s)	402, 993
Alw26I	GTCTC	1 cut(s)	639
AlwI	GGATC	2 cut(s)	443, 851
Ama87I	CYCGRG	1 cut(s)	752
Aor13HI	TCCGGA	1 cut(s)	809
AoxI	GGCC	3 cut(s)	157, 381, 490
ApeKI	GCWGC	1 cut(s)	353
ApoI	RAATTY	3 cut(s)	423, 465, 814
ArsI	GACNNNNNNTTYG	2 cut(s)	832, 864
Asp700I	GAANNNNTTC	1 cut(s)	805
AspS9I	GGNCC	2 cut(s)	381, 491
AsuC2I	CCSGG	2 cut(s)	32, 611
AsuHPI	GGTGA	3 cut(s)	700, 719, 825
AvaI	CYCGRG	1 cut(s)	752
Bbv12I	GWGCWC	2 cut(s)	402, 993
BbvI	GCAGC	1 cut(s)	340
BccI	CCATC	6 cut(s)	80, 227, 313, 553, 768, 891
BceAI	ACGGC	2 cut(s)	29, 304
BcgI	CGANNNNNNTGC	2 cut(s)	332, 366
BciT130I	CCWGG	3 cut(s)	156, 433, 930
BciVI	GTATCC	1 cut(s)	976
BcnI	CCSGG	2 cut(s)	32, 611
BcoDI	GTCTC	1 cut(s)	639
BfmI	CTRYAG	1 cut(s)	295
BfuI	GTATCC	1 cut(s)	976
BisI	GCNGC	1 cut(s)	354
BlsI	GCNGC	1 cut(s)	355
Bme1390I	CCNGG	5 cut(s)	32, 156, 433, 611, 930
BmeT110I	CYCGRG	1 cut(s)	752
BmgBI	CACGTC	1 cut(s)	649
BmgT120I	GGNCC	2 cut(s)	381, 491
BmiI	GGNNCC	2 cut(s)	736, 808
BmrFI	CCNGG	5 cut(s)	32, 156, 433, 611, 930
BmsI	GCATC	3 cut(s)	97, 309, 778
BpmI	CTGGAG	3 cut(s)	138, 663, 951
BpuMI	CCSGG	2 cut(s)	32, 611
Bsa29I	ATCGAT	2 cut(s)	699, 855
BsaJI	CCNNGG	4 cut(s)	165, 384, 730, 775
BsaWI	WCCGGW	1 cut(s)	809
Bsc4I	CCNNNNNNNGG	2 cut(s)	166, 893
Bse1I	ACTGG	4 cut(s)	202, 267, 646, 808
Bse3DI	GCAATG	2 cut(s)	459, 946
BseAI	TCCGGA	1 cut(s)	809
BseBI	CCWGG	3 cut(s)	156, 433, 930
BseCI	ATCGAT	2 cut(s)	699, 855
BseDI	CCNNGG	4 cut(s)	165, 384, 730, 775
BseGI	GGATG	6 cut(s)	220, 238, 300, 699, 760, 902
BseLI	CCNNNNNNNGG	2 cut(s)	166, 893
BseMI	GCAATG	2 cut(s)	459, 946
BseNI	ACTGG	4 cut(s)	202, 267, 646, 808
BseXI	GCAGC	1 cut(s)	340
BseYI	CCCAGC	2 cut(s)	197, 972
Bsh1236I	CGCG	1 cut(s)	77
BshFI	GGCC	3 cut(s)	159, 383, 492
BshVI	ATCGAT	2 cut(s)	699, 855
BsiHKAI	GWGCWC	2 cut(s)	402, 993
BsiHKCI	CYCGRG	1 cut(s)	752
BsiSI	CCGG	4 cut(s)	31, 332, 611, 810
BslFI	GGGAC	2 cut(s)	398, 694
BslI	CCNNNNNNNGG	2 cut(s)	166, 893
BsmAI	GTCTC	1 cut(s)	639
BsmBI	CGTCTC	1 cut(s)	639
BsmFI	GGGAC	2 cut(s)	398, 694
BsmI	GAATGC	1 cut(s)	1026
BsnI	GGCC	3 cut(s)	159, 383, 492
BsoBI	CYCGRG	1 cut(s)	752
Bsp1286I	GDGCHC	2 cut(s)	402, 993
Bsp13I	TCCGGA	1 cut(s)	809
Bsp143I	GATC	5 cut(s)	435, 696, 720, 852, 856
Bsp19I	CCATGG	2 cut(s)	165, 775
Bsp68I	TCGCGA	1 cut(s)	77
BspACI	CCGC	4 cut(s)	183, 335, 620, 1037
BspANI	GGCC	3 cut(s)	159, 383, 492
BspDI	ATCGAT	2 cut(s)	699, 855
BspEI	TCCGGA	1 cut(s)	809
BspFNI	CGCG	1 cut(s)	77
BspHI	TCATGA	1 cut(s)	144
BspLI	GGNNCC	2 cut(s)	736, 808
BspPI	GGATC	2 cut(s)	443, 851
BsrDI	GCAATG	2 cut(s)	459, 946
BsrI	ACTGG	4 cut(s)	202, 267, 646, 808
BssECI	CCNNGG	4 cut(s)	165, 384, 730, 775
BssMI	GATC	5 cut(s)	435, 696, 720, 852, 856
BssT1I	CCWWGG	4 cut(s)	165, 384, 730, 775
Bst2UI	CCWGG	3 cut(s)	156, 433, 930
Bst4CI	ACNGT	6 cut(s)	14, 63, 94, 587, 599, 988
Bst6I	CTCTTC	1 cut(s)	333
BstAPI	GCANNNNNTGC	2 cut(s)	107, 512
BstC8I	GCNNGC	4 cut(s)	391, 517, 564, 1041
BstDEI	CTNAG	2 cut(s)	369, 1068
BstDSI	CCRYGG	2 cut(s)	165, 775
BstF5I	GGATG	6 cut(s)	220, 238, 300, 699, 760, 902
BstFNI	CGCG	1 cut(s)	77
BstKTI	GATC	5 cut(s)	438, 699, 723, 855, 859
BstMAI	GTCTC	1 cut(s)	639
BstMBI	GATC	5 cut(s)	435, 696, 720, 852, 856
BstMWI	GCNNNNNNNGC	3 cut(s)	107, 297, 512
BstNI	CCWGG	3 cut(s)	156, 433, 930
BstSCI	CCNGG	5 cut(s)	30, 154, 431, 609, 928
BstSFI	CTRYAG	1 cut(s)	295
BstUI	CGCG	1 cut(s)	77
BstV1I	GCAGC	1 cut(s)	340
BstX2I	RGATCY	1 cut(s)	435
BstYI	RGATCY	1 cut(s)	435
Bsu15I	ATCGAT	2 cut(s)	699, 855
BsuI	GTATCC	1 cut(s)	976
BsuRI	GGCC	3 cut(s)	159, 383, 492
BsuTUI	ATCGAT	2 cut(s)	699, 855
BtgI	CCRYGG	2 cut(s)	165, 775
BtgZI	GCGATG	1 cut(s)	58
BtrI	CACGTC	1 cut(s)	649
BtsCI	GGATG	6 cut(s)	220, 238, 300, 699, 760, 902
BtsIMutI	CAGTG	3 cut(s)	274, 592, 639
BtuMI	TCGCGA	1 cut(s)	77
Cac8I	GCNNGC	4 cut(s)	391, 517, 564, 1041
CciI	TCATGA	1 cut(s)	144
Cfr13I	GGNCC	2 cut(s)	381, 491
ClaI	ATCGAT	2 cut(s)	699, 855
Csp6I	GTAC	1 cut(s)	557
CviAII	CATG	5 cut(s)	145, 166, 211, 483, 776
CviQI	GTAC	1 cut(s)	557
DdeI	CTNAG	2 cut(s)	369, 1068
DpnI	GATC	5 cut(s)	437, 698, 722, 854, 858
DpnII	GATC	5 cut(s)	435, 696, 720, 852, 856
DraI	TTTAAA	1 cut(s)	916
Eam1104I	CTCTTC	1 cut(s)	333
EarI	CTCTTC	1 cut(s)	333
EciI	GGCGGA	2 cut(s)	350, 609
Eco130I	CCWWGG	4 cut(s)	165, 384, 730, 775
Eco88I	CYCGRG	1 cut(s)	752
EcoO109I	RGGNCCY	1 cut(s)	381
EcoRII	CCWGG	3 cut(s)	154, 431, 928
EcoT14I	CCWWGG	4 cut(s)	165, 384, 730, 775
EcoT22I	ATGCAT	1 cut(s)	771
ErhI	CCWWGG	4 cut(s)	165, 384, 730, 775
Esp3I	CGTCTC	1 cut(s)	639
FaeI	CATG	5 cut(s)	148, 169, 214, 486, 779
FaqI	GGGAC	2 cut(s)	398, 694
FatI	CATG	5 cut(s)	144, 165, 210, 482, 775
Fnu4HI	GCNGC	1 cut(s)	354
FokI	GGATG	6 cut(s)	207, 245, 287, 706, 747, 909
Fsp4HI	GCNGC	1 cut(s)	354
GluI	GCNGC	1 cut(s)	354
GsaI	CCCAGC	2 cut(s)	201, 976
GsuI	CTGGAG	3 cut(s)	138, 663, 951
HaeIII	GGCC	3 cut(s)	159, 383, 492
HapII	CCGG	4 cut(s)	31, 332, 611, 810
Hin1II	CATG	5 cut(s)	148, 169, 214, 486, 779
HincII	GTYRAC	1 cut(s)	871
HindII	GTYRAC	1 cut(s)	871
HindIII	AAGCTT	1 cut(s)	517
HinfI	GANTC	1 cut(s)	541
HpaI	GTTAAC	1 cut(s)	871
HpaII	CCGG	4 cut(s)	31, 332, 611, 810
HphI	GGTGA	3 cut(s)	700, 719, 825
Hpy166II	GTNNAC	2 cut(s)	595, 871
Hpy188I	TCNGA	2 cut(s)	673, 800
Hpy188III	TCNNGA	4 cut(s)	76, 145, 538, 810
Hpy8I	GTNNAC	2 cut(s)	595, 871
HpyAV	CCTTC	2 cut(s)	482, 704
HpyCH4III	ACNGT	6 cut(s)	14, 63, 94, 587, 599, 988
HpyCH4IV	ACGT	1 cut(s)	648
HpyCH4V	TGCA	7 cut(s)	272, 452, 506, 515, 562, 769, 946
HpyF10VI	GCNNNNNNNGC	3 cut(s)	107, 297, 512
HpyF3I	CTNAG	2 cut(s)	369, 1068
HpySE526I	ACGT	1 cut(s)	648
Hsp92II	CATG	5 cut(s)	148, 169, 214, 486, 779
Kpn2I	TCCGGA	1 cut(s)	809
KspAI	GTTAAC	1 cut(s)	871
Kzo9I	GATC	5 cut(s)	435, 696, 720, 852, 856
Lsp1109I	GCAGC	1 cut(s)	340
LweI	GCATC	3 cut(s)	97, 309, 778
MaeII	ACGT	1 cut(s)	648
MaeIII	GTNAC	3 cut(s)	178, 244, 653
MalI	GATC	5 cut(s)	437, 698, 722, 854, 858
MboI	GATC	5 cut(s)	435, 696, 720, 852, 856
MboII	GAAGA	5 cut(s)	17, 68, 320, 471, 718
MfeI	CAATTG	1 cut(s)	273
MflI	RGATCY	1 cut(s)	435
MhlI	GDGCHC	2 cut(s)	402, 993
MluCI	AATT	7 cut(s)	273, 423, 465, 475, 604, 814, 847
MmeI	TCCRAC	2 cut(s)	347, 778
MnlI	CCTC	5 cut(s)	98, 204, 678, 684, 1062
Mph1103I	ATGCAT	1 cut(s)	771
MroI	TCCGGA	1 cut(s)	809
MroXI	GAANNNNTTC	1 cut(s)	805
MseI	TTAA	4 cut(s)	521, 819, 870, 915
MslI	CAYNNNNRTG	1 cut(s)	774
MspA1I	CMGCKG	1 cut(s)	972
MspI	CCGG	4 cut(s)	31, 332, 611, 810
MspR9I	CCNGG	5 cut(s)	32, 156, 433, 611, 930
MunI	CAATTG	1 cut(s)	273
Mva1269I	GAATGC	1 cut(s)	1026
MvaI	CCWGG	3 cut(s)	156, 433, 930
MvnI	CGCG	1 cut(s)	77
MwoI	GCNNNNNNNGC	3 cut(s)	107, 297, 512
NciI	CCSGG	2 cut(s)	32, 611
NcoI	CCATGG	2 cut(s)	165, 775
NdeII	GATC	5 cut(s)	435, 696, 720, 852, 856
NlaIII	CATG	5 cut(s)	148, 169, 214, 486, 779
NlaIV	GGNNCC	2 cut(s)	736, 808
NruI	TCGCGA	1 cut(s)	77
NsiI	ATGCAT	1 cut(s)	771
PagI	TCATGA	1 cut(s)	144
PctI	GAATGC	1 cut(s)	1026
PdmI	GAANNNNTTC	1 cut(s)	805
PfeI	GAWTC	1 cut(s)	541
PflMI	CCANNNNNTGG	2 cut(s)	166, 893
PfoI	TCCNGGA	3 cut(s)	431, 609, 928
PkrI	GCNGC	1 cut(s)	355
PsiI	TTATAA	1 cut(s)	443
Psp6I	CCWGG	3 cut(s)	154, 431, 928
PspFI	CCCAGC	2 cut(s)	197, 972
PspGI	CCWGG	3 cut(s)	154, 431, 928
PspN4I	GGNNCC	2 cut(s)	736, 808
PspPI	GGNCC	2 cut(s)	381, 491
PsrI	GAACNNNNNNTAC	2 cut(s)	229, 261
PsuI	RGATCY	1 cut(s)	435
PvuII	CAGCTG	1 cut(s)	972
RruI	TCGCGA	1 cut(s)	77
RsaI	GTAC	1 cut(s)	558
RsaNI	GTAC	1 cut(s)	557
RseI	CAYNNNNRTG	1 cut(s)	774
SaqAI	TTAA	4 cut(s)	521, 819, 870, 915
SatI	GCNGC	1 cut(s)	354
Sau3AI	GATC	5 cut(s)	435, 696, 720, 852, 856
Sau96I	GGNCC	2 cut(s)	381, 491
ScrFI	CCNGG	5 cut(s)	32, 156, 433, 611, 930
SduI	GDGCHC	2 cut(s)	402, 993
SfaNI	GCATC	3 cut(s)	97, 309, 778
SfcI	CTRYAG	1 cut(s)	295
SmiMI	CAYNNNNRTG	1 cut(s)	774
Sse9I	AATT	7 cut(s)	273, 423, 465, 475, 604, 814, 847
SsiI	CCGC	4 cut(s)	183, 335, 620, 1037
StyD4I	CCNGG	5 cut(s)	30, 154, 431, 609, 928
StyI	CCWWGG	4 cut(s)	165, 384, 730, 775
TaaI	ACNGT	6 cut(s)	14, 63, 94, 587, 599, 988
TaiI	ACGT	1 cut(s)	651
TaqI	TCGA	3 cut(s)	420, 699, 855
TasI	AATT	7 cut(s)	273, 423, 465, 475, 604, 814, 847
TatI	WGTACW	1 cut(s)	556
TfiI	GAWTC	1 cut(s)	541
Tru1I	TTAA	4 cut(s)	521, 819, 870, 915
Tru9I	TTAA	4 cut(s)	521, 819, 870, 915
TscAI	CASTG	3 cut(s)	274, 592, 646
TseI	GCWGC	1 cut(s)	353
TspDTI	ATGAA	5 cut(s)	65, 102, 470, 471, 474
TspRI	CASTG	3 cut(s)	274, 592, 646
Van91I	CCANNNNNTGG	2 cut(s)	166, 893
XapI	RAATTY	3 cut(s)	423, 465, 814
XcmI	CCANNNNNNNNNTGG	2 cut(s)	894, 976
XmnI	GAANNNNTTC	1 cut(s)	805
Zsp2I	ATGCAT	1 cut(s)	771

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.