pycom10g03350

Hydroxyproline-rich glycoprotein family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0006684
Physical Location & Seq
Forward (+)
3684840 .. 3688361
3522 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1197 bp
ATGGGCCTTACGACAGACCGACCCACGAAACCAAAAAGACCCAAAAACGTAAAACCCTTTTGCTTCTCTTTTCTCTTCCCTCTCTTCTTTCTTTCAGACAAAATCGTAGGCACAGCGACGACATGCAAATGTAGAGATGGATTTCGACTGAGCGATTTGAATGCACAGAGCATGTTACGACGACGCCTCACTTTTTCCTCCTTCAACTCCAACTGCCCCCACAAATCTGTATTGAGTGGGTGGCGCCGACGTCCGTACGCTAGTAACTCTAACGCCGCTGCTGCCGAAGCAGAGGCAGAGGGGGAGGCGGAGGCGCCGAATGGAAATGTCCCCAAACCCAAAGTTAAGGGGAAAAGGCTTCCCAAAGCGGAGCGCCAAGTTATGCTTGAATCCTTTGTCAACCAGTACAGAGCAAAGAATGCCGGGGCATTCCCTACCATTTCATATGCCCAGAAAGAATTGGGTGGCTCGTACTATGTCGTGAAGAACATCCTTCAGGAGCTGCAGTACAGAGCTAAGATGTCTCCCTCGTGTCCTGCGACTGAAGATCTGCCAGTACAACAGAAAGTTAGCAAAACTGAGTCTTTGGCTCATGTTGAAGAGAAATCAACCGGTGAGGTGCCAGCTGATTCCAATGCTCAAAATGTTTCTGCGGCGATGTATGATTTGCCAAGGCAAGAAGAAGTTAGAGAAATTAAATCTGTGACTCAAGTTGAAGAGAATTCAACCAGTGAGATGTCAGCTGATGTCAGTGTTCGAATTGATTCTAAGGCGACATATGATACTGATCTTAATGGTGCAAGTGGCGGGAATTTAGAACCCAAAGAAGAGGCTCAGACTTCCTCCTCAGTTAATGTTGTGTCTGAAGAGGTTGCCACTCCAGGACCGAAGAGTAGTCAAACAGACGAAGCCCAAGCTGATCAACATGAATTTGTTGTAAAAGAAAAAGATCTGCCAATAGGGGAAAGTAATGGAGTTGCTCATCCAAGTTTAGGTGATACAAAGGATATGATAAAACAATATGATGACTCAAAGCGTAAAACAGAGCAATATAAAGAGATCCCTCAGCCAGACAAACTTTCCAAAGAGCGTTCAGGTACGCAGGCTGAAGATGCAGAGCCATCAACGACATCATCTCTTTGGGGGAATATGAAGTCATTTGCCAATGGCATTATTAGTCTTTTCAGAAAGCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

399

Amino Acids

43.84

Weight (kDa)

6.93

Isoelectric Point (pI)

52.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HTH_AT3G52170 PF25896 121 - 170 1.6e-24 Helix-turn-helix domain in AT3G52170-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 253
AccB1I GGYRCC 3 cut(s) 243, 313, 619
AciI CCGC 5 cut(s) 276, 308, 368, 653, 807
AclWI GGATC 1 cut(s) 1054
AcsI RAATTY 3 cut(s) 721, 811, 929
AcuI CTGAAG 4 cut(s) 479, 564, 885, 1128
AcyI GRCGYC 4 cut(s) 184, 244, 250, 314
AfaI GTAC 6 cut(s) 257, 407, 473, 509, 558, 1099
AfiI CCNNNNNNNGG 1 cut(s) 992
AgeI ACCGGT 1 cut(s) 611
AgsI TTSAA 6 cut(s) 160, 205, 389, 599, 716, 726
AjnI CCWGG 1 cut(s) 880
AluBI AGCT 5 cut(s) 502, 515, 626, 743, 917
AluI AGCT 5 cut(s) 502, 515, 626, 743, 917
Alw26I GTCTC 1 cut(s) 528
AlwI GGATC 1 cut(s) 1054
AlwNI CAGNNNCTG 1 cut(s) 502
AoxI GGCC 1 cut(s) 4
ApeKI GCWGC 3 cut(s) 278, 281, 502
ApoI RAATTY 3 cut(s) 721, 811, 929
AsiGI ACCGGT 1 cut(s) 611
Asp700I GAANNNNTTC 1 cut(s) 763
AspLEI GCGC 3 cut(s) 246, 316, 375
AspS9I GGNCC 2 cut(s) 4, 884
AsuC2I CCSGG 1 cut(s) 424
AsuHPI GGTGA 2 cut(s) 626, 1007
AsuII TTCGAA 1 cut(s) 757
AvaII GGWCC 1 cut(s) 884
BanI GGYRCC 3 cut(s) 243, 313, 619
BauI CACGAG 1 cut(s) 529
BbvCI CCTCAGC 1 cut(s) 1065
BbvI GCAGC 3 cut(s) 265, 268, 489
BccI CCATC 2 cut(s) 131, 1129
BcgI CGANNNNNNTGC 2 cut(s) 143, 177
BciT130I CCWGG 1 cut(s) 882
BclI TGATCA 1 cut(s) 919
BcnI CCSGG 1 cut(s) 424
BcoDI GTCTC 1 cut(s) 528
BfaI CTAG 1 cut(s) 261
BfmI CTRYAG 1 cut(s) 503
BfoI RGCGCY 3 cut(s) 247, 317, 376
BglII AGATCT 2 cut(s) 547, 949
BisI GCNGC 5 cut(s) 276, 279, 282, 503, 654
BlsI GCNGC 5 cut(s) 277, 280, 283, 504, 655
Bme1390I CCNGG 2 cut(s) 424, 882
Bme18I GGWCC 1 cut(s) 884
BmgT120I GGNCC 2 cut(s) 4, 884
BmiI GGNNCC 3 cut(s) 245, 315, 621
BmrFI CCNGG 2 cut(s) 424, 882
BmsI GCATC 1 cut(s) 1102
BpmI CTGGAG 1 cut(s) 864
Bpu10I CCTNAGC 1 cut(s) 1065
Bpu14I TTCGAA 1 cut(s) 757
BpuEI CTTGAG 1 cut(s) 693
BpuMI CCSGG 1 cut(s) 424
BsaBI GATNNNNATC 1 cut(s) 786
BsaHI GRCGYC 4 cut(s) 184, 244, 250, 314
BsaJI CCNNGG 2 cut(s) 423, 671
BsaWI WCCGGW 1 cut(s) 611
BsaXI ACNNNNNCTCC 2 cut(s) 491, 521
Bsc4I CCNNNNNNNGG 1 cut(s) 992
Bse118I RCCGGY 1 cut(s) 611
Bse1I ACTGG 3 cut(s) 403, 554, 729
Bse8I GATNNNNATC 1 cut(s) 786
BseBI CCWGG 1 cut(s) 882
BseDI CCNNGG 2 cut(s) 423, 671
BseGI GGATG 2 cut(s) 489, 982
BseJI GATNNNNATC 1 cut(s) 786
BseLI CCNNNNNNNGG 1 cut(s) 992
BseMII CTCAG 5 cut(s) 140, 570, 848, 861, 1079
BseNI ACTGG 3 cut(s) 403, 554, 729
BseRI GAGGAG 1 cut(s) 835
BseXI GCAGC 3 cut(s) 265, 268, 489
BshFI GGCC 1 cut(s) 6
BshNI GGYRCC 3 cut(s) 243, 313, 619
BshTI ACCGGT 1 cut(s) 611
BsiSI CCGG 2 cut(s) 423, 612
BsiWI CGTACG 1 cut(s) 255
BslFI GGGAC 1 cut(s) 314
BslI CCNNNNNNNGG 1 cut(s) 992
BsmAI GTCTC 1 cut(s) 528
BsmFI GGGAC 1 cut(s) 314
BsmI GAATGC 3 cut(s) 166, 424, 428
BsnI GGCC 1 cut(s) 6
Bsp119I TTCGAA 1 cut(s) 757
Bsp143I GATC 5 cut(s) 547, 787, 919, 949, 1059
BspACI CCGC 5 cut(s) 276, 308, 368, 653, 807
BspANI GGCC 1 cut(s) 6
BspCNI CTCAG 5 cut(s) 141, 571, 847, 860, 1078
BspLI GGNNCC 3 cut(s) 245, 315, 621
BspMAI CTGCAG 1 cut(s) 507
BspPI GGATC 1 cut(s) 1054
BspT104I TTCGAA 1 cut(s) 757
BspT107I GGYRCC 3 cut(s) 243, 313, 619
BsrFI RCCGGY 1 cut(s) 611
BsrI ACTGG 3 cut(s) 403, 554, 729
BssAI RCCGGY 1 cut(s) 611
BssECI CCNNGG 2 cut(s) 423, 671
BssMI GATC 5 cut(s) 547, 787, 919, 949, 1059
BssNI GRCGYC 4 cut(s) 184, 244, 250, 314
BssSI CACGAG 1 cut(s) 529
BssT1I CCWWGG 1 cut(s) 671
Bst2BI CACGAG 1 cut(s) 529
Bst2UI CCWGG 1 cut(s) 882
Bst6I CTCTTC 7 cut(s) 80, 89, 594, 711, 822, 861, 884
BstACI GRCGYC 4 cut(s) 184, 244, 250, 314
BstAPI GCANNNNNTGC 1 cut(s) 419
BstBI TTCGAA 1 cut(s) 757
BstC8I GCNNGC 2 cut(s) 624, 1104
BstDEI CTNAG 7 cut(s) 149, 516, 579, 768, 834, 847, 1065
BstF5I GGATG 2 cut(s) 489, 982
BstH2I RGCGCY 3 cut(s) 247, 317, 376
BstHHI GCGC 3 cut(s) 246, 316, 375
BstKTI GATC 5 cut(s) 550, 790, 922, 952, 1062
BstMAI GTCTC 1 cut(s) 528
BstMBI GATC 5 cut(s) 547, 787, 919, 949, 1059
BstMWI GCNNNNNNNGC 4 cut(s) 281, 287, 419, 1112
BstNI CCWGG 1 cut(s) 882
BstNSI RCATGY 2 cut(s) 126, 175
BstSCI CCNGG 2 cut(s) 422, 880
BstSFI CTRYAG 1 cut(s) 503
BstV1I GCAGC 3 cut(s) 265, 268, 489
BstX2I RGATCY 3 cut(s) 547, 949, 1059
BstYI RGATCY 3 cut(s) 547, 949, 1059
BsuRI GGCC 1 cut(s) 6
BtgZI GCGATG 1 cut(s) 671
BtsCI GGATG 2 cut(s) 489, 982
BtsIMutI CAGTG 2 cut(s) 736, 757
Cac8I GCNNGC 2 cut(s) 624, 1104
CaiI CAGNNNCTG 1 cut(s) 502
CfoI GCGC 3 cut(s) 246, 316, 375
Cfr10I RCCGGY 1 cut(s) 611
Cfr13I GGNCC 2 cut(s) 4, 884
CseI GACGC 1 cut(s) 192
Csp6I GTAC 6 cut(s) 256, 406, 472, 508, 557, 1098
CspAI ACCGGT 1 cut(s) 611
CviAII CATG 4 cut(s) 123, 172, 593, 926
CviQI GTAC 6 cut(s) 256, 406, 472, 508, 557, 1098
DdeI CTNAG 7 cut(s) 149, 516, 579, 768, 834, 847, 1065
DinI GGCGCC 2 cut(s) 245, 315
DpnI GATC 5 cut(s) 549, 789, 921, 951, 1061
DpnII GATC 5 cut(s) 547, 787, 919, 949, 1059
Eam1104I CTCTTC 7 cut(s) 80, 89, 594, 711, 822, 861, 884
EarI CTCTTC 7 cut(s) 80, 89, 594, 711, 822, 861, 884
EciI GGCGGA 1 cut(s) 323
Eco130I CCWWGG 1 cut(s) 671
Eco47I GGWCC 1 cut(s) 884
Eco57I CTGAAG 4 cut(s) 479, 564, 885, 1128
EcoRI GAATTC 1 cut(s) 721
EcoRII CCWGG 1 cut(s) 880
EcoT14I CCWWGG 1 cut(s) 671
EgeI GGCGCC 2 cut(s) 245, 315
EheI GGCGCC 2 cut(s) 245, 315
ErhI CCWWGG 1 cut(s) 671
FaeI CATG 4 cut(s) 126, 175, 596, 929
FalI AAGNNNNNCTT 2 cut(s) 369, 401
FaqI GGGAC 1 cut(s) 314
FatI CATG 4 cut(s) 122, 171, 592, 925
FauI CCCGC 1 cut(s) 800
FauNDI CATATG 2 cut(s) 445, 778
FbaI TGATCA 1 cut(s) 919
Fnu4HI GCNGC 5 cut(s) 276, 279, 282, 503, 654
FokI GGATG 2 cut(s) 476, 969
Fsp4HI GCNGC 5 cut(s) 276, 279, 282, 503, 654
FspBI CTAG 1 cut(s) 261
GlaI GCGC 3 cut(s) 245, 315, 374
GluI GCNGC 5 cut(s) 276, 279, 282, 503, 654
GsuI CTGGAG 1 cut(s) 864
HaeII RGCGCY 3 cut(s) 247, 317, 376
HaeIII GGCC 1 cut(s) 6
HapII CCGG 2 cut(s) 423, 612
HgaI GACGC 1 cut(s) 192
HhaI GCGC 3 cut(s) 246, 316, 375
Hin1I GRCGYC 4 cut(s) 184, 244, 250, 314
Hin1II CATG 4 cut(s) 126, 175, 596, 929
Hin6I GCGC 3 cut(s) 244, 314, 373
HinP1I GCGC 3 cut(s) 244, 314, 373
HincII GTYRAC 1 cut(s) 400
HindII GTYRAC 1 cut(s) 400
HinfI GANTC 6 cut(s) 389, 581, 629, 706, 764, 1028
HpaII CCGG 2 cut(s) 423, 612
HphI GGTGA 2 cut(s) 626, 1007
Hpy166II GTNNAC 1 cut(s) 400
Hpy188I TCNGA 4 cut(s) 97, 837, 865, 1187
Hpy188III TCNNGA 2 cut(s) 481, 497
Hpy8I GTNNAC 1 cut(s) 400
Hpy99I CGWCG 4 cut(s) 121, 183, 186, 252
HpyAV CCTTC 2 cut(s) 211, 503
HpyCH4IV ACGT 2 cut(s) 48, 250
HpyCH4V TGCA 5 cut(s) 126, 164, 505, 800, 1115
HpyF10VI GCNNNNNNNGC 4 cut(s) 281, 287, 419, 1112
HpyF3I CTNAG 7 cut(s) 149, 516, 579, 768, 834, 847, 1065
HpySE526I ACGT 2 cut(s) 48, 250
Hsp92I GRCGYC 4 cut(s) 184, 244, 250, 314
Hsp92II CATG 4 cut(s) 126, 175, 596, 929
HspAI GCGC 3 cut(s) 244, 314, 373
KasI GGCGCC 2 cut(s) 243, 313
Ksp22I TGATCA 1 cut(s) 919
Kzo9I GATC 5 cut(s) 547, 787, 919, 949, 1059
LmnI GCTCC 2 cut(s) 370, 499
Lsp1109I GCAGC 3 cut(s) 265, 268, 489
LweI GCATC 1 cut(s) 1102
MaeI CTAG 1 cut(s) 261
MaeII ACGT 2 cut(s) 48, 250
MaeIII GTNAC 3 cut(s) 174, 263, 703
MalI GATC 5 cut(s) 549, 789, 921, 951, 1061
MboI GATC 5 cut(s) 547, 787, 919, 949, 1059
MflI RGATCY 3 cut(s) 547, 949, 1059
MluCI AATT 6 cut(s) 458, 693, 721, 759, 811, 929
Mly113I GGCGCC 2 cut(s) 244, 314
MlyI GAGTC 3 cut(s) 590, 700, 1022
MmeI TCCRAC 1 cut(s) 234
MroXI GAANNNNTTC 1 cut(s) 763
MseI TTAA 4 cut(s) 345, 696, 792, 852
MslI CAYNNNNRTG 1 cut(s) 127
MspA1I CMGCKG 3 cut(s) 278, 626, 743
MspI CCGG 2 cut(s) 423, 612
MspR9I CCNGG 2 cut(s) 424, 882
Mva1269I GAATGC 3 cut(s) 166, 424, 428
MvaI CCWGG 1 cut(s) 882
MwoI GCNNNNNNNGC 4 cut(s) 281, 287, 419, 1112
NarI GGCGCC 2 cut(s) 244, 314
NciI CCSGG 1 cut(s) 424
NdeI CATATG 2 cut(s) 445, 778
NdeII GATC 5 cut(s) 547, 787, 919, 949, 1059
NlaIII CATG 4 cut(s) 126, 175, 596, 929
NlaIV GGNNCC 3 cut(s) 245, 315, 621
NmuCI GTSAC 1 cut(s) 703
NspI RCATGY 2 cut(s) 126, 175
NspV TTCGAA 1 cut(s) 757
PcsI WCGNNNNNNNCGW 1 cut(s) 536
PctI GAATGC 3 cut(s) 166, 424, 428
PdmI GAANNNNTTC 1 cut(s) 763
PfeI GAWTC 3 cut(s) 389, 629, 764
Pfl23II CGTACG 1 cut(s) 255
PfoI TCCNGGA 1 cut(s) 880
PinAI ACCGGT 1 cut(s) 611
PkrI GCNGC 5 cut(s) 277, 280, 283, 504, 655
PleI GAGTC 3 cut(s) 589, 700, 1022
PluTI GGCGCC 2 cut(s) 247, 317
PpsI GAGTC 3 cut(s) 589, 700, 1022
Psp6I CCWGG 1 cut(s) 880
PspGI CCWGG 1 cut(s) 880
PspLI CGTACG 1 cut(s) 255
PspN4I GGNNCC 3 cut(s) 245, 315, 621
PspPI GGNCC 2 cut(s) 4, 884
PstI CTGCAG 1 cut(s) 507
PstNI CAGNNNCTG 1 cut(s) 502
PsuI RGATCY 3 cut(s) 547, 949, 1059
PvuII CAGCTG 2 cut(s) 626, 743
RsaI GTAC 6 cut(s) 257, 407, 473, 509, 558, 1099
RsaNI GTAC 6 cut(s) 256, 406, 472, 508, 557, 1098
RseI CAYNNNNRTG 1 cut(s) 127
SaqAI TTAA 4 cut(s) 345, 696, 792, 852
SatI GCNGC 5 cut(s) 276, 279, 282, 503, 654
Sau3AI GATC 5 cut(s) 547, 787, 919, 949, 1059
Sau96I GGNCC 2 cut(s) 4, 884
SchI GAGTC 3 cut(s) 590, 700, 1022
ScrFI CCNGG 2 cut(s) 424, 882
SfaNI GCATC 1 cut(s) 1102
SfcI CTRYAG 1 cut(s) 503
SfoI GGCGCC 2 cut(s) 245, 315
SfuI TTCGAA 1 cut(s) 757
SinI GGWCC 1 cut(s) 884
SmiMI CAYNNNNRTG 1 cut(s) 127
SmlI CTYRAG 1 cut(s) 708
SmoI CTYRAG 1 cut(s) 708
Sse9I AATT 6 cut(s) 458, 693, 721, 759, 811, 929
SsiI CCGC 5 cut(s) 276, 308, 368, 653, 807
SspDI GGCGCC 2 cut(s) 243, 313
SspMI CTAG 1 cut(s) 261
StyD4I CCNGG 2 cut(s) 422, 880
StyI CCWWGG 1 cut(s) 671
TaiI ACGT 2 cut(s) 51, 253
TaqI TCGA 2 cut(s) 145, 757
TaqII GACCGA 2 cut(s) 33, 901
TasI AATT 6 cut(s) 458, 693, 721, 759, 811, 929
TatI WGTACW 3 cut(s) 405, 507, 556
TauI GCSGC 2 cut(s) 278, 656
TfiI GAWTC 3 cut(s) 389, 629, 764
Tru1I TTAA 4 cut(s) 345, 696, 792, 852
Tru9I TTAA 4 cut(s) 345, 696, 792, 852
TscAI CASTG 2 cut(s) 736, 757
TseFI GTSAC 1 cut(s) 703
TseI GCWGC 3 cut(s) 278, 281, 502
Tsp45I GTSAC 1 cut(s) 703
TspDTI ATGAA 3 cut(s) 432, 942, 1166
TspGWI ACGGA 1 cut(s) 243
TspRI CASTG 2 cut(s) 736, 757
VpaK11BI GGWCC 1 cut(s) 884
XapI RAATTY 3 cut(s) 721, 811, 929
XceI RCATGY 2 cut(s) 126, 175
XmnI GAANNNNTTC 1 cut(s) 763
XspI CTAG 1 cut(s) 261
ZraI GACGTC 1 cut(s) 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.