pycom10g03480

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0014098
Physical Location & Seq
Reverse (-)
3793269 .. 3793868
600 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 600 bp
ATGAAGAAGTATCAACACTCTTCTCAAAGAAAACCGTCATTTTCTTCCTCATCGTCCTCGTCTTCATTTTTCGTATCGTCATCCTGTAATCTCGATCGTGATTCTTCTCCCCCTATTAGTCCGGCCACCCCACTTCGATTTTCCGGCGTCCCATTCTCTTGGGAACATGTTCCCGGAATTCCAAAGAAACCTAGCAGCAGCAGCAGCAACAAGAAGGAATTATTTTCATCACTGAAGCGCCTCCCACAACCTCCTCCCAGAGTCAGTAATCAGAAAATCACCTCAAAAAAGTTGATCGTGGATGATATACAGGTGAGACACAGCAACTCCAAGGGCAAGGGGCATACAGCTAATTATCTCCCAAAGGATCCTTTCTTTGCTGCATTGGTTGAGTGTTCCAAGGACGACGACGGCAACGACGATGATCAAGGATACTCAAGTGCTGGTGCCAAGGTCTCAAGGAGTGTGAGTGAAAGGTTTGGATTCTTCAATCTTTCTACATTATCTTGTAAGACAACTTGTGCAGTTTCTGAATCAATCATACACGTTCAAGGGCCGAGTAGAACTTCTTATCATCTGATTAATCGCCGTTCCCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF688

Protein Analysis

200

Amino Acids

21.87

Weight (kDa)

9.83

Isoelectric Point (pI)

62.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014098)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G22680 AT1G71970
fragaria_vesca FvH4_2g11630
malus_domestica MD05G1042300.v1.1
prunus_persica Prupe.8G058900_v2.0.a1
pyrus_communis pycom05g03490 pycom10g03480
rosa_chinensis RchiOBHm_Chr6g0270871
rosa_laevigata RLG00000013763
rosa_multiflora Rmu_sc0010417.1_g000001
rosa_roxburghii Rroxscaffold_3G00238570 Rroxscaffold_7G00197560
rosa_samantha Rh6AG176400 Rh6BG179800 Rh6CG175800 Rh6DG168100
rosa_wichuraiana Rw6G015030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 446
AclWI GGATC 2 cut(s) 362, 375
AcoI YGGCCR 1 cut(s) 123
AcsI RAATTY 1 cut(s) 177
AcuI CTGAAG 1 cut(s) 254
AcyI GRCGYC 1 cut(s) 147
AflIII ACRYGT 2 cut(s) 166, 544
AgsI TTSAA 2 cut(s) 490, 551
AluBI AGCT 1 cut(s) 350
AluI AGCT 1 cut(s) 350
Alw26I GTCTC 2 cut(s) 310, 460
AlwI GGATC 2 cut(s) 362, 375
AlwNI CAGNNNCTG 1 cut(s) 530
AoxI GGCC 2 cut(s) 123, 554
ApeKI GCWGC 5 cut(s) 195, 198, 201, 204, 380
ApoI RAATTY 1 cut(s) 177
AseI ATTAAT 1 cut(s) 582
Asp700I GAANNNNTTC 1 cut(s) 168
AspLEI GCGC 1 cut(s) 240
AspS9I GGNCC 1 cut(s) 554
AsuC2I CCSGG 1 cut(s) 174
AsuHPI GGTGA 2 cut(s) 271, 325
BaeI ACNNNNGTAYC 2 cut(s) 424, 457
BamHI GGATCC 1 cut(s) 367
BanI GGYRCC 1 cut(s) 446
BbsI GAAGAC 1 cut(s) 54
BbvI GCAGC 5 cut(s) 207, 210, 213, 216, 367
BceAI ACGGC 2 cut(s) 427, 573
BciVI GTATCC 1 cut(s) 425
BclI TGATCA 1 cut(s) 424
BcnI CCSGG 1 cut(s) 174
BcoDI GTCTC 2 cut(s) 310, 460
BfaI CTAG 1 cut(s) 192
BfoI RGCGCY 1 cut(s) 241
BfuI GTATCC 1 cut(s) 425
BisI GCNGC 5 cut(s) 196, 199, 202, 205, 381
BlsI GCNGC 5 cut(s) 197, 200, 203, 206, 382
Bme1390I CCNGG 1 cut(s) 174
BmgT120I GGNCC 1 cut(s) 554
BmiI GGNNCC 2 cut(s) 369, 448
BmrFI CCNGG 1 cut(s) 174
BpiI GAAGAC 1 cut(s) 54
BpuEI CTTGAG 2 cut(s) 421, 442
BpuMI CCSGG 1 cut(s) 174
BsaHI GRCGYC 1 cut(s) 147
BsaI GGTCTC 1 cut(s) 460
BsaJI CCNNGG 3 cut(s) 330, 399, 450
BsaXI ACNNNNNCTCC 4 cut(s) 311, 341, 454, 484
BseDI CCNNGG 3 cut(s) 330, 399, 450
BseGI GGATG 2 cut(s) 80, 307
BseRI GAGGAG 1 cut(s) 243
BseXI GCAGC 5 cut(s) 207, 210, 213, 216, 367
BsgI GTGCAG 1 cut(s) 543
Bsh1285I CGRYCG 1 cut(s) 97
BshFI GGCC 2 cut(s) 125, 556
BshNI GGYRCC 1 cut(s) 446
BsiEI CGRYCG 1 cut(s) 97
BsiSI CCGG 3 cut(s) 122, 144, 174
BslFI GGGAC 1 cut(s) 134
BsmAI GTCTC 2 cut(s) 310, 460
BsmFI GGGAC 1 cut(s) 134
BsnI GGCC 2 cut(s) 125, 556
Bso31I GGTCTC 1 cut(s) 460
Bsp143I GATC 4 cut(s) 94, 294, 367, 424
BspANI GGCC 2 cut(s) 125, 556
BspLI GGNNCC 2 cut(s) 369, 448
BspPI GGATC 2 cut(s) 362, 375
BspT107I GGYRCC 1 cut(s) 446
BspTNI GGTCTC 1 cut(s) 460
BssECI CCNNGG 3 cut(s) 330, 399, 450
BssMI GATC 4 cut(s) 94, 294, 367, 424
BssNI GRCGYC 1 cut(s) 147
BssT1I CCWWGG 3 cut(s) 330, 399, 450
Bst4CI ACNGT 1 cut(s) 36
Bst6I CTCTTC 1 cut(s) 25
BstACI GRCGYC 1 cut(s) 147
BstF5I GGATG 2 cut(s) 80, 307
BstH2I RGCGCY 1 cut(s) 241
BstHHI GCGC 1 cut(s) 240
BstKTI GATC 4 cut(s) 97, 297, 370, 427
BstMAI GTCTC 2 cut(s) 310, 460
BstMBI GATC 4 cut(s) 94, 294, 367, 424
BstMCI CGRYCG 1 cut(s) 97
BstMWI GCNNNNNNNGC 2 cut(s) 201, 204
BstNSI RCATGY 1 cut(s) 170
BstSCI CCNGG 1 cut(s) 172
BstV1I GCAGC 5 cut(s) 207, 210, 213, 216, 367
BstV2I GAAGAC 1 cut(s) 54
BstX2I RGATCY 1 cut(s) 367
BstXI CCANNNNNNTGG 1 cut(s) 159
BstYI RGATCY 1 cut(s) 367
BsuI GTATCC 1 cut(s) 425
BsuRI GGCC 2 cut(s) 125, 556
BtsCI GGATG 2 cut(s) 80, 307
BtsIMutI CAGTG 1 cut(s) 230
CaiI CAGNNNCTG 1 cut(s) 530
CfoI GCGC 1 cut(s) 240
Cfr13I GGNCC 1 cut(s) 554
CseI GACGC 1 cut(s) 136
CviAII CATG 1 cut(s) 167
CviJI RGCY 3 cut(s) 125, 350, 556
CviKI_1 RGCY 3 cut(s) 125, 350, 556
DpnI GATC 4 cut(s) 96, 296, 369, 426
DpnII GATC 4 cut(s) 94, 294, 367, 424
EaeI YGGCCR 1 cut(s) 123
Eam1104I CTCTTC 1 cut(s) 25
EarI CTCTTC 1 cut(s) 25
Eco130I CCWWGG 3 cut(s) 330, 399, 450
Eco31I GGTCTC 1 cut(s) 460
Eco57I CTGAAG 1 cut(s) 254
EcoRI GAATTC 1 cut(s) 177
EcoT14I CCWWGG 3 cut(s) 330, 399, 450
ErhI CCWWGG 3 cut(s) 330, 399, 450
FaeI CATG 1 cut(s) 170
FaiI YATR 4 cut(s) 168, 308, 345, 542
FaqI GGGAC 1 cut(s) 134
FatI CATG 1 cut(s) 166
FbaI TGATCA 1 cut(s) 424
Fnu4HI GCNGC 5 cut(s) 196, 199, 202, 205, 381
FokI GGATG 2 cut(s) 67, 314
Fsp4HI GCNGC 5 cut(s) 196, 199, 202, 205, 381
FspBI CTAG 1 cut(s) 192
GlaI GCGC 1 cut(s) 239
GluI GCNGC 5 cut(s) 196, 199, 202, 205, 381
HaeII RGCGCY 1 cut(s) 241
HaeIII GGCC 2 cut(s) 125, 556
HapII CCGG 3 cut(s) 122, 144, 174
HgaI GACGC 1 cut(s) 136
HhaI GCGC 1 cut(s) 240
Hin1I GRCGYC 1 cut(s) 147
Hin1II CATG 1 cut(s) 170
Hin6I GCGC 1 cut(s) 238
HinP1I GCGC 1 cut(s) 238
HinfI GANTC 4 cut(s) 101, 261, 483, 533
HpaII CCGG 3 cut(s) 122, 144, 174
HphI GGTGA 2 cut(s) 271, 325
Hpy188I TCNGA 3 cut(s) 273, 532, 579
Hpy188III TCNNGA 3 cut(s) 92, 98, 594
Hpy99I CGWCG 3 cut(s) 410, 413, 422
HpyAV CCTTC 1 cut(s) 208
HpyCH4III ACNGT 1 cut(s) 36
HpyCH4IV ACGT 1 cut(s) 546
HpyCH4V TGCA 2 cut(s) 383, 524
HpyF10VI GCNNNNNNNGC 2 cut(s) 201, 204
HpySE526I ACGT 1 cut(s) 546
Hsp92I GRCGYC 1 cut(s) 147
Hsp92II CATG 1 cut(s) 170
HspAI GCGC 1 cut(s) 238
Ksp22I TGATCA 1 cut(s) 424
Kzo9I GATC 4 cut(s) 94, 294, 367, 424
LpnPI CCDG 7 cut(s) 97, 135, 157, 187, 271, 296, 429
Lsp1109I GCAGC 5 cut(s) 207, 210, 213, 216, 367
MaeI CTAG 1 cut(s) 192
MaeII ACGT 1 cut(s) 546
MalI GATC 4 cut(s) 96, 296, 369, 426
MboI GATC 4 cut(s) 94, 294, 367, 424
MboII GAAGA 6 cut(s) 12, 16, 36, 54, 96, 478
MflI RGATCY 1 cut(s) 367
MluCI AATT 3 cut(s) 177, 218, 352
MlyI GAGTC 1 cut(s) 270
MnlI CCTC 6 cut(s) 58, 67, 251, 261, 264, 292
MroXI GAANNNNTTC 1 cut(s) 168
MseI TTAA 1 cut(s) 582
MspI CCGG 3 cut(s) 122, 144, 174
MspR9I CCNGG 1 cut(s) 174
MwoI GCNNNNNNNGC 2 cut(s) 201, 204
NciI CCSGG 1 cut(s) 174
NdeII GATC 4 cut(s) 94, 294, 367, 424
NlaIII CATG 1 cut(s) 170
NlaIV GGNNCC 2 cut(s) 369, 448
NmeAIII GCCGAG 1 cut(s) 582
NspI RCATGY 1 cut(s) 170
PciI ACATGT 1 cut(s) 166
PcsI WCGNNNNNNNCGW 3 cut(s) 414, 417, 592
PdmI GAANNNNTTC 1 cut(s) 168
PfeI GAWTC 3 cut(s) 101, 483, 533
PfoI TCCNGGA 1 cut(s) 172
PkrI GCNGC 5 cut(s) 197, 200, 203, 206, 382
Ple19I CGATCG 1 cut(s) 97
PleI GAGTC 1 cut(s) 269
PpsI GAGTC 1 cut(s) 269
PscI ACATGT 1 cut(s) 166
PshBI ATTAAT 1 cut(s) 582
PspN4I GGNNCC 2 cut(s) 369, 448
PspPI GGNCC 1 cut(s) 554
PstNI CAGNNNCTG 1 cut(s) 530
PsuI RGATCY 1 cut(s) 367
PvuI CGATCG 1 cut(s) 97
SaqAI TTAA 1 cut(s) 582
SatI GCNGC 5 cut(s) 196, 199, 202, 205, 381
Sau3AI GATC 4 cut(s) 94, 294, 367, 424
Sau96I GGNCC 1 cut(s) 554
SchI GAGTC 1 cut(s) 270
ScrFI CCNGG 1 cut(s) 174
SetI ASST 8 cut(s) 193, 253, 284, 315, 352, 456, 479, 549
SmlI CTYRAG 2 cut(s) 436, 457
SmoI CTYRAG 2 cut(s) 436, 457
Sse9I AATT 3 cut(s) 177, 218, 352
SspMI CTAG 1 cut(s) 192
StyD4I CCNGG 1 cut(s) 172
StyI CCWWGG 3 cut(s) 330, 399, 450
TaaI ACNGT 1 cut(s) 36
TaiI ACGT 1 cut(s) 549
TaqI TCGA 2 cut(s) 93, 136
TasI AATT 3 cut(s) 177, 218, 352
TfiI GAWTC 3 cut(s) 101, 483, 533
Tru1I TTAA 1 cut(s) 582
Tru9I TTAA 1 cut(s) 582
TscAI CASTG 1 cut(s) 237
TseI GCWGC 5 cut(s) 195, 198, 201, 204, 380
TspDTI ATGAA 3 cut(s) 17, 54, 216
TspRI CASTG 1 cut(s) 237
VspI ATTAAT 1 cut(s) 582
XapI RAATTY 1 cut(s) 177
XceI RCATGY 1 cut(s) 170
XmnI GAANNNNTTC 1 cut(s) 168
XspI CTAG 1 cut(s) 192
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.