Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0005992

Physical Location & Seq

Genomic Coordinates Forward (+)

5738471 .. 5742480

Gene Structure 4010 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2061 bp

ATGTCAAGTTACTATACTGGTTCGAATAATCAAAAAGATGCAACGCCAATGCTCTATTTAAGGGAACCTTTGCCTAGTTCTTATCCAGAAGCACCTCTCGTCTCTGGTAACATGATGATGTATATGAACTCTGGGTCATACTCGGACGCATTGGCTGGGAGTTCTCAGCAGCAAAACAACTTAGGCTCCTCGGTCGGGGGTTCAGATTCCAACCAGCAGCAGCATGATGTCCTATCGCATCTTGGTGGCGCGCATATTGGAGAGCAGGGATTCAGTCCATGGAGGGAGGGTAGAAATGAGATGCTAGTTACGCACCCCATGGGTACTTCTTCAGGTATTCTTCATGGTGGACACAACTTGCAAGGTCAGGGGTTGTCCCTCAGCCTCAGTACACAAATCCCATCAGGAATGCAAGTGCCTTCTATCTCGTACCGGAATAACAATATGGGTTTTGCTTCATTCTTAAGTCCTAATGCATCCGTTTCAAGTGAGGGTGACGGTAGGAATGGTTCTTTTAGAGATGAGCAGCCAAGAAATGTTGAATATTTGCAATCTGGTTTTCCGGGAGGCAATCCAGATTCAAGTAAAGGGGATTTGTCTCCATATGGGATGTCGAGTATGGCAAGAACCATTCCCCATAACAAATACCTCAAAGCAGCACAACAACTGCTTGATGAAGTCGTCAATGTCCAGAAAGCACTGAAGCAGCATGATAGAGAGAAGAACCAAAGCACACACAATCATCAGAAGAGTTTCAAGGAAGGAGATGATGGATCAAAGAATGATCTTGAGAGTGGAGTATCTACAAACCCTCAAGAGCCGGCCAGCAACTCACCGTGTGAGCTTTCACATGCCGAGAAACAAGAGTTGCAAAGCAAGTTGACGAAGCTTCTGTCTATGCTAGATGAGGTTGACAGAAGGTACAAGCAGTATTATCATCAGATGCAGATTGTTGTATCGTCATTTGATGCGATAGCGGGAAGTGGGTCAGCTAAACCGTACACAGCTGTTGCCCTGCAGACTATTTCACGTCACTTTCGGTGCTTACATGATGCAATCACAGGGCAGATACGAGCAACCCGTAAAAGCCTTGGGGAGCAAGGTGCCTCAGGAAGCATGAAAGGAGTTGGAATATCTCGCCTCCGTTATGTGGACCAGCATCTCAAGCAGCAGAGAGCCCTTCAGCAGCTTGGCATGATGCAACAACATGCATGGAGACCACAAAGAGGTTTGCCGGAAAGCTCTGTCTCAATTCTGCGAGCATGGCTCTTTGAGCATTTCCTTCATCCCTATCCGAAGGATTCTGATAAGATCCTGCTAGCAAGGCAGACAGGCTTGACTAGAAGTCAGGTCTCAAACTGGTTTATCAATGCACGAGTTCGCCTTTGGAAGCCCATGGTTGAGGAGATGTACAAGGAAGAGGCTGGTGATGCTGAGATGGATTCCAACTCTTCATCTGAGAATACACCTCAAACAAAAAAAGGTGACAACACGAGGACCATGGAAGACGGAGTAGAAGGTATGCAACCTAGCGCAAGTTCGACAGCCATTGAGAAATTCAGCACGGGACAATTTATGGATTCCAAATCTGACCATTTCCATGACGTGGAAATGGCTGGATCCACTGGATATGCCAATTTCCAGAATGTGACTCGTCATGAAGCTGAAGCTGAGTACGGGCTCGTCAAGCTTAGAGAGGGGCAAAGGCCTGGTATGGATGACTCGAGTCTCTTTTCTGAAGCAAATGTTCAGACTGATAGGAACAGTGAGAGGTTTACGGCAGCTGCTGCTGCATACCACATGCCGGAGCTGGGGAGATTTGGAAGTGGAAGCGGGGTTTCTCTGACACTGGGATTGCAGCATTGTGACGGTGGCGGTAGCCTACCCATCTCTAGTGGGACTCATCACGGGTTTGTTTCTGTGAGAGGGGACGATTTATACAACCCTGCAGCTTCTTCTGTAGGATCGATTGATACAGCAGATTTTGAATGCCTTGATTCCGGGAACCAGCAGCAACACAGATTTAGTTCCTCCCATCTGTTACATGATTTCGTAGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0044212 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox_KN POX

Protein Analysis

687

Amino Acids

75.12

Weight (kDa)

6.05

Isoelectric Point (pI)

44.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
POX	PF07526	212 - 354	6.5e-49	Associated with HOX
Homeobox_KN	PF05920	422 - 461	1.7e-18	Homeobox KN domain
Homeodomain	PF00046	429 - 461	3.8e-06	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005992)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16400
fragaria_vesca	FvH4_2g09770 FvH4_2g09770 FvH4_2g09770
malus_domestica	MD05G1059800.v1.1 MD10G1068000.v1.1
prunus_persica	Prupe.8G089800_v2.0.a1 Prupe.8G089800_v2.0.a1 Prupe.8G089800_v2.0.a1
pyrus_communis	pycom05g05110 pycom05g05120 pycom10g05380
rosa_chinensis	RchiOBHm_Chr6g0266091 RchiOBHm_Chr6g0266111
rosa_laevigata	RLG00000014115
rosa_multiflora	Rmu_co8443717.1_g000001 Rmu_sc0004324.1_g000004
rosa_roxburghii	Rroxscaffold_174G00435200 Rroxscaffold_7G00201970
rosa_rugosa	Rorug06G0023900 Rorug06G0024000 Rorug06G0024100
rosa_samantha	Rh6AG144700 Rh6BG145100 Rh6CG141800 Rh6DG129400
rosa_wichuraiana	Rw6G012490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1103
AccB7I	CCANNNNNTGG	1 cut(s)	1606
AccII	CGCG	1 cut(s)	251
AciI	CCGC	3 cut(s)	977, 1833, 1875
AclWI	GGATC	5 cut(s)	781, 1306, 1614, 1627, 1972
AcoI	YGGCCR	1 cut(s)	822
AcsI	RAATTY	1 cut(s)	1556
AcuI	CTGAAG	5 cut(s)	315, 722, 1166, 1686, 1758
AdeI	CACNNNGTG	1 cut(s)	839
AfaI	GTAC	7 cut(s)	325, 391, 431, 923, 1001, 1412, 1676
AfiI	CCNNNNNNNGG	6 cut(s)	195, 1150, 1226, 1606, 1804, 1811
AflII	CTTAAG	1 cut(s)	463
AgsI	TTSAA	5 cut(s)	486, 542, 582, 757, 1988
AhdI	GACNNNNNGTC	1 cut(s)	1344
AjiI	CACGTC	2 cut(s)	1031, 1606
AjnI	CCWGG	1 cut(s)	1708
Alw26I	GTCTC	6 cut(s)	106, 603, 1210, 1252, 1357, 1733
AlwI	GGATC	5 cut(s)	781, 1306, 1614, 1627, 1972
AlwNI	CAGNNNCTG	1 cut(s)	1787
Ama87I	CYCGRG	1 cut(s)	1723
AoxI	GGCC	2 cut(s)	822, 1706
ApoI	RAATTY	1 cut(s)	1556
ArsI	GACNNNNNNTTYG	2 cut(s)	878, 910
Asp700I	GAANNNNTTC	1 cut(s)	752
AspLEI	GCGC	3 cut(s)	251, 253, 1535
AspS9I	GGNCC	2 cut(s)	1153, 1497
AsuC2I	CCSGG	2 cut(s)	564, 2002
AsuHPI	GGTGA	4 cut(s)	506, 825, 1439, 1496
AsuII	TTCGAA	1 cut(s)	23
AsuNHI	GCTAGC	1 cut(s)	1318
AvaI	CYCGRG	1 cut(s)	1723
AvaII	GGWCC	2 cut(s)	1153, 1497
AxyI	CCTNAGG	1 cut(s)	1108
BamHI	GGATCC	1 cut(s)	1619
BanI	GGYRCC	1 cut(s)	1103
BanII	GRGCYC	2 cut(s)	1180, 1683
BauI	CACGAG	2 cut(s)	1374, 1492
BbsI	GAAGAC	1 cut(s)	1512
BbvCI	CCTCAGC	1 cut(s)	380
BccI	CCATC	5 cut(s)	409, 764, 1432, 1895, 2043
BceAI	ACGGC	1 cut(s)	1794
BciT130I	CCWGG	1 cut(s)	1710
BcnI	CCSGG	2 cut(s)	564, 2002
BcoDI	GTCTC	6 cut(s)	106, 603, 1210, 1252, 1357, 1733
BfaI	CTAG	7 cut(s)	75, 305, 902, 1319, 1341, 1530, 1893
BfmI	CTRYAG	3 cut(s)	1016, 1947, 1959
BfrI	CTTAAG	1 cut(s)	463
Bme1390I	CCNGG	3 cut(s)	564, 1710, 2002
Bme18I	GGWCC	2 cut(s)	1153, 1497
BmeRI	GACNNNNNGTC	1 cut(s)	1344
BmeT110I	CYCGRG	1 cut(s)	1723
BmgBI	CACGTC	2 cut(s)	1031, 1606
BmgT120I	GGNCC	2 cut(s)	1153, 1497
BmiI	GGNNCC	5 cut(s)	66, 187, 1105, 1621, 2006
BmrFI	CCNGG	3 cut(s)	564, 1710, 2002
BmrI	ACTGGG	1 cut(s)	1859
BmtI	GCTAGC	1 cut(s)	1322
BmuI	ACTGGG	1 cut(s)	1859
BoxI	GACNNNNGTC	1 cut(s)	1725
BpiI	GAAGAC	1 cut(s)	1512
BplI	GAGNNNNNCTC	2 cut(s)	1251, 1283
Bpu10I	CCTNAGC	1 cut(s)	380
Bpu14I	TTCGAA	1 cut(s)	23
BpuEI	CTTGAG	3 cut(s)	798, 809, 1148
BpuMI	CCSGG	2 cut(s)	564, 2002
Bsa29I	ATCGAT	1 cut(s)	1967
BsaI	GGTCTC	2 cut(s)	1210, 1357
BsaJI	CCNNGG	6 cut(s)	189, 278, 318, 1090, 1395, 1500
BsaWI	WCCGGW	1 cut(s)	432
BsaXI	ACNNNNNCTCC	4 cut(s)	170, 200, 274, 304
Bsc4I	CCNNNNNNNGG	6 cut(s)	195, 1150, 1226, 1606, 1804, 1811
Bse118I	RCCGGY	1 cut(s)	820
Bse1I	ACTGG	4 cut(s)	22, 1364, 1630, 1854
Bse21I	CCTNAGG	1 cut(s)	1108
BseBI	CCWGG	1 cut(s)	1710
BseCI	ATCGAT	1 cut(s)	1967
BseDI	CCNNGG	6 cut(s)	189, 278, 318, 1090, 1395, 1500
BseGI	GGATG	4 cut(s)	476, 615, 1285, 1723
BseLI	CCNNNNNNNGG	6 cut(s)	195, 1150, 1226, 1606, 1804, 1811
BseMII	CTCAG	7 cut(s)	179, 394, 400, 1122, 1425, 1449, 1662
BseNI	ACTGG	4 cut(s)	22, 1364, 1630, 1854
BsePI	GCGCGC	1 cut(s)	249
BseRI	GAGGAG	2 cut(s)	178, 1418
BseYI	CCCAGC	2 cut(s)	155, 1810
Bsh1236I	CGCG	1 cut(s)	251
Bsh1285I	CGRYCG	1 cut(s)	195
BshFI	GGCC	2 cut(s)	824, 1708
BshNI	GGYRCC	1 cut(s)	1103
BshVI	ATCGAT	1 cut(s)	1967
BsiEI	CGRYCG	1 cut(s)	195
BsiHKCI	CYCGRG	1 cut(s)	1723
BsiSI	CCGG	6 cut(s)	433, 563, 821, 1235, 1805, 2001
BslFI	GGGAC	4 cut(s)	361, 1581, 1912, 1943
BslI	CCNNNNNNNGG	6 cut(s)	195, 1150, 1226, 1606, 1804, 1811
BsmAI	GTCTC	6 cut(s)	106, 603, 1210, 1252, 1357, 1733
BsmBI	CGTCTC	1 cut(s)	106
BsmFI	GGGAC	4 cut(s)	361, 1581, 1912, 1943
BsmI	GAATGC	2 cut(s)	414, 1994
BsnI	GGCC	2 cut(s)	824, 1708
Bso31I	GGTCTC	2 cut(s)	1210, 1357
BsoBI	CYCGRG	1 cut(s)	1723
Bsp119I	TTCGAA	1 cut(s)	23
Bsp1286I	GDGCHC	2 cut(s)	1180, 1683
Bsp1407I	TGTACA	1 cut(s)	1410
Bsp143I	GATC	5 cut(s)	773, 784, 1311, 1619, 1964
Bsp19I	CCATGG	4 cut(s)	278, 318, 1395, 1500
BspACI	CCGC	3 cut(s)	977, 1833, 1875
BspANI	GGCC	2 cut(s)	824, 1708
BspCNI	CTCAG	7 cut(s)	178, 393, 399, 1121, 1426, 1450, 1663
BspDI	ATCGAT	1 cut(s)	1967
BspFNI	CGCG	1 cut(s)	251
BspHI	TCATGA	1 cut(s)	1657
BspLI	GGNNCC	5 cut(s)	66, 187, 1105, 1621, 2006
BspMAI	CTGCAG	2 cut(s)	1020, 1951
BspOI	GCTAGC	1 cut(s)	1322
BspPI	GGATC	5 cut(s)	781, 1306, 1614, 1627, 1972
BspT104I	TTCGAA	1 cut(s)	23
BspT107I	GGYRCC	1 cut(s)	1103
BspTI	CTTAAG	1 cut(s)	463
BspTNI	GGTCTC	2 cut(s)	1210, 1357
BsrFI	RCCGGY	1 cut(s)	820
BsrGI	TGTACA	1 cut(s)	1410
BsrI	ACTGG	4 cut(s)	22, 1364, 1630, 1854
BssAI	RCCGGY	1 cut(s)	820
BssECI	CCNNGG	6 cut(s)	189, 278, 318, 1090, 1395, 1500
BssHII	GCGCGC	1 cut(s)	249
BssMI	GATC	5 cut(s)	773, 784, 1311, 1619, 1964
BssSI	CACGAG	2 cut(s)	1374, 1492
BssT1I	CCWWGG	5 cut(s)	278, 318, 1090, 1395, 1500
Bst2BI	CACGAG	2 cut(s)	1374, 1492
Bst2UI	CCWGG	1 cut(s)	1710
Bst4CI	ACNGT	5 cut(s)	500, 837, 999, 1766, 1871
Bst6I	CTCTTC	3 cut(s)	743, 1413, 1456
BstAFI	CTTAAG	1 cut(s)	463
BstAPI	GCANNNNNTGC	1 cut(s)	1787
BstAUI	TGTACA	1 cut(s)	1410
BstBI	TTCGAA	1 cut(s)	23
BstC8I	GCNNGC	5 cut(s)	251, 822, 826, 1260, 1320
BstDEI	CTNAG	9 cut(s)	165, 181, 380, 386, 1108, 1434, 1458, 1671, 1691
BstDSI	CCRYGG	4 cut(s)	278, 318, 1395, 1500
BstF5I	GGATG	4 cut(s)	476, 615, 1285, 1723
BstFNI	CGCG	1 cut(s)	251
BstHHI	GCGC	3 cut(s)	251, 253, 1535
BstKTI	GATC	5 cut(s)	776, 787, 1314, 1622, 1967
BstMAI	GTCTC	6 cut(s)	106, 603, 1210, 1252, 1357, 1733
BstMBI	GATC	5 cut(s)	773, 784, 1311, 1619, 1964
BstMCI	CGRYCG	1 cut(s)	195
BstMWI	GCNNNNNNNGC	9 cut(s)	310, 1165, 1264, 1273, 1324, 1430, 1687, 1787, 1790
BstNI	CCWGG	1 cut(s)	1710
BstNSI	RCATGY	3 cut(s)	854, 1211, 1804
BstPAI	GACNNNNGTC	1 cut(s)	1725
BstSCI	CCNGG	3 cut(s)	562, 1708, 2000
BstSFI	CTRYAG	3 cut(s)	1016, 1947, 1959
BstUI	CGCG	1 cut(s)	251
BstV2I	GAAGAC	1 cut(s)	1512
BstX2I	RGATCY	2 cut(s)	1311, 1619
BstYI	RGATCY	2 cut(s)	1311, 1619
Bsu15I	ATCGAT	1 cut(s)	1967
Bsu36I	CCTNAGG	1 cut(s)	1108
BsuRI	GGCC	2 cut(s)	824, 1708
BsuTUI	ATCGAT	1 cut(s)	1967
BtgI	CCRYGG	4 cut(s)	278, 318, 1395, 1500
BtrI	CACGTC	2 cut(s)	1031, 1606
BtsCI	GGATG	4 cut(s)	476, 615, 1285, 1723
BtsIMutI	CAGTG	4 cut(s)	698, 1623, 1771, 1847
Cac8I	GCNNGC	5 cut(s)	251, 822, 826, 1260, 1320
CaiI	CAGNNNCTG	1 cut(s)	1787
CciI	TCATGA	1 cut(s)	1657
CfoI	GCGC	3 cut(s)	251, 253, 1535
Cfr10I	RCCGGY	1 cut(s)	820
Cfr13I	GGNCC	2 cut(s)	1153, 1497
ClaI	ATCGAT	1 cut(s)	1967
CseI	GACGC	1 cut(s)	155
Csp6I	GTAC	7 cut(s)	324, 390, 430, 922, 1000, 1411, 1675
CviQI	GTAC	7 cut(s)	324, 390, 430, 922, 1000, 1411, 1675
DdeI	CTNAG	9 cut(s)	165, 181, 380, 386, 1108, 1434, 1458, 1671, 1691
DpnI	GATC	5 cut(s)	775, 786, 1313, 1621, 1966
DpnII	GATC	5 cut(s)	773, 784, 1311, 1619, 1964
DraIII	CACNNNGTG	1 cut(s)	839
DriI	GACNNNNNGTC	1 cut(s)	1344
EaeI	YGGCCR	1 cut(s)	822
Eam1104I	CTCTTC	3 cut(s)	743, 1413, 1456
Eam1105I	GACNNNNNGTC	1 cut(s)	1344
EarI	CTCTTC	3 cut(s)	743, 1413, 1456
Eco130I	CCWWGG	5 cut(s)	278, 318, 1090, 1395, 1500
Eco147I	AGGCCT	1 cut(s)	1708
Eco24I	GRGCYC	2 cut(s)	1180, 1683
Eco31I	GGTCTC	2 cut(s)	1210, 1357
Eco47I	GGWCC	2 cut(s)	1153, 1497
Eco57I	CTGAAG	5 cut(s)	315, 722, 1166, 1686, 1758
Eco81I	CCTNAGG	1 cut(s)	1108
Eco88I	CYCGRG	1 cut(s)	1723
EcoRII	CCWGG	1 cut(s)	1708
EcoT14I	CCWWGG	5 cut(s)	278, 318, 1090, 1395, 1500
EcoT22I	ATGCAT	2 cut(s)	478, 1213
EcoT38I	GRGCYC	2 cut(s)	1180, 1683
ErhI	CCWWGG	5 cut(s)	278, 318, 1090, 1395, 1500
Esp3I	CGTCTC	1 cut(s)	106
FalI	AAGNNNNNCTT	2 cut(s)	52, 84
FaqI	GGGAC	4 cut(s)	361, 1581, 1912, 1943
FauI	CCCGC	2 cut(s)	970, 1826
FauNDI	CATATG	1 cut(s)	604
FokI	GGATG	4 cut(s)	463, 622, 1272, 1730
FriOI	GRGCYC	2 cut(s)	1180, 1683
FspBI	CTAG	7 cut(s)	75, 305, 902, 1319, 1341, 1530, 1893
GlaI	GCGC	3 cut(s)	250, 252, 1534
GsaI	CCCAGC	2 cut(s)	159, 1814
HaeIII	GGCC	2 cut(s)	824, 1708
HapII	CCGG	6 cut(s)	433, 563, 821, 1235, 1805, 2001
HgaI	GACGC	1 cut(s)	155
HhaI	GCGC	3 cut(s)	251, 253, 1535
Hin6I	GCGC	3 cut(s)	249, 251, 1533
HinP1I	GCGC	3 cut(s)	249, 251, 1533
HincII	GTYRAC	2 cut(s)	882, 913
HindII	GTYRAC	2 cut(s)	882, 913
HindIII	AAGCTT	2 cut(s)	887, 1688
HpaII	CCGG	6 cut(s)	433, 563, 821, 1235, 1805, 2001
HphI	GGTGA	4 cut(s)	506, 825, 1439, 1496
Hpy166II	GTNNAC	7 cut(s)	350, 392, 882, 913, 1002, 1153, 1776
Hpy188III	TCNNGA	9 cut(s)	86, 405, 575, 691, 788, 815, 1110, 1642, 1658
Hpy8I	GTNNAC	7 cut(s)	350, 392, 882, 913, 1002, 1153, 1776
HpyAV	CCTTC	7 cut(s)	429, 755, 912, 1190, 1291, 1292, 1511
HpyCH4III	ACNGT	5 cut(s)	500, 837, 999, 1766, 1871
HpyCH4IV	ACGT	2 cut(s)	1030, 1605
HpyF10VI	GCNNNNNNNGC	9 cut(s)	310, 1165, 1264, 1273, 1324, 1430, 1687, 1787, 1790
HpyF3I	CTNAG	9 cut(s)	165, 181, 380, 386, 1108, 1434, 1458, 1671, 1691
HpySE526I	ACGT	2 cut(s)	1030, 1605
HspAI	GCGC	3 cut(s)	249, 251, 1533
KroI	GCCGGC	1 cut(s)	820
KroNI	GCCGGC	1 cut(s)	822
Kzo9I	GATC	5 cut(s)	773, 784, 1311, 1619, 1964
LmnI	GCTCC	3 cut(s)	191, 1096, 1807
MaeI	CTAG	7 cut(s)	75, 305, 902, 1319, 1341, 1530, 1893
MaeII	ACGT	2 cut(s)	1030, 1605
MaeIII	GTNAC	9 cut(s)	8, 107, 307, 494, 1031, 1484, 1648, 1865, 2040
MalI	GATC	5 cut(s)	775, 786, 1313, 1621, 1966
MboI	GATC	5 cut(s)	773, 784, 1311, 1619, 1964
MboII	GAAGA	8 cut(s)	321, 332, 733, 760, 1430, 1443, 1517, 1947
MflI	RGATCY	2 cut(s)	1311, 1619
MhlI	GDGCHC	2 cut(s)	1180, 1683
MluCI	AATT	4 cut(s)	1251, 1556, 1571, 1636
MlyI	GAGTC	4 cut(s)	1645, 1715, 1735, 1894
MmeI	TCCRAC	3 cut(s)	234, 1108, 1470
Mph1103I	ATGCAT	2 cut(s)	478, 1213
MroNI	GCCGGC	1 cut(s)	820
MroXI	GAANNNNTTC	1 cut(s)	752
MseI	TTAA	2 cut(s)	59, 464
MslI	CAYNNNNRTG	3 cut(s)	116, 243, 1599
MspA1I	CMGCKG	2 cut(s)	1007, 1784
MspCI	CTTAAG	1 cut(s)	463
MspI	CCGG	6 cut(s)	433, 563, 821, 1235, 1805, 2001
MspR9I	CCNGG	3 cut(s)	564, 1710, 2002
Mva1269I	GAATGC	2 cut(s)	414, 1994
MvaI	CCWGG	1 cut(s)	1710
MvnI	CGCG	1 cut(s)	251
MwoI	GCNNNNNNNGC	9 cut(s)	310, 1165, 1264, 1273, 1324, 1430, 1687, 1787, 1790
NaeI	GCCGGC	1 cut(s)	822
NciI	CCSGG	2 cut(s)	564, 2002
NcoI	CCATGG	4 cut(s)	278, 318, 1395, 1500
NdeI	CATATG	1 cut(s)	604
NdeII	GATC	5 cut(s)	773, 784, 1311, 1619, 1964
NgoMIV	GCCGGC	1 cut(s)	820
NheI	GCTAGC	1 cut(s)	1318
NlaIV	GGNNCC	5 cut(s)	66, 187, 1105, 1621, 2006
NmeAIII	GCCGAG	1 cut(s)	880
NmuCI	GTSAC	5 cut(s)	494, 1031, 1484, 1648, 1865
NsiI	ATGCAT	2 cut(s)	478, 1213
NspI	RCATGY	3 cut(s)	854, 1211, 1804
NspV	TTCGAA	1 cut(s)	23
PaeR7I	CTCGAG	1 cut(s)	1723
PagI	TCATGA	1 cut(s)	1657
PauI	GCGCGC	1 cut(s)	249
PceI	AGGCCT	1 cut(s)	1708
PcsI	WCGNNNNNNNCGW	1 cut(s)	1078
PctI	GAATGC	2 cut(s)	414, 1994
PdiI	GCCGGC	1 cut(s)	822
PdmI	GAANNNNTTC	1 cut(s)	752
PfeI	GAWTC	7 cut(s)	206, 270, 578, 1301, 1442, 1580, 1997
PflMI	CCANNNNNTGG	1 cut(s)	1606
PfoI	TCCNGGA	2 cut(s)	562, 2000
PleI	GAGTC	4 cut(s)	1645, 1715, 1734, 1894
PpsI	GAGTC	4 cut(s)	1645, 1715, 1734, 1894
PshAI	GACNNNNGTC	1 cut(s)	1725
Psp6I	CCWGG	1 cut(s)	1708
PspFI	CCCAGC	2 cut(s)	155, 1810
PspGI	CCWGG	1 cut(s)	1708
PspN4I	GGNNCC	5 cut(s)	66, 187, 1105, 1621, 2006
PspPI	GGNCC	2 cut(s)	1153, 1497
PspXI	VCTCGAGB	1 cut(s)	1723
PsrI	GAACNNNNNNTAC	2 cut(s)	493, 525
PstI	CTGCAG	2 cut(s)	1020, 1951
PstNI	CAGNNNCTG	1 cut(s)	1787
PsuI	RGATCY	2 cut(s)	1311, 1619
PteI	GCGCGC	1 cut(s)	249
PvuII	CAGCTG	2 cut(s)	1007, 1784
RsaI	GTAC	7 cut(s)	325, 391, 431, 923, 1001, 1412, 1676
RsaNI	GTAC	7 cut(s)	324, 390, 430, 922, 1000, 1411, 1675
RseI	CAYNNNNRTG	3 cut(s)	116, 243, 1599
SaqAI	TTAA	2 cut(s)	59, 464
Sau3AI	GATC	5 cut(s)	773, 784, 1311, 1619, 1964
Sau96I	GGNCC	2 cut(s)	1153, 1497
SchI	GAGTC	4 cut(s)	1645, 1715, 1735, 1894
ScrFI	CCNGG	3 cut(s)	564, 1710, 2002
SduI	GDGCHC	2 cut(s)	1180, 1683
SfcI	CTRYAG	3 cut(s)	1016, 1947, 1959
Sfr274I	CTCGAG	1 cut(s)	1723
SfuI	TTCGAA	1 cut(s)	23
SinI	GGWCC	2 cut(s)	1153, 1497
SlaI	CTCGAG	1 cut(s)	1723
SmiMI	CAYNNNNRTG	3 cut(s)	116, 243, 1599
SmlI	CTYRAG	5 cut(s)	463, 788, 813, 1163, 1723
SmoI	CTYRAG	5 cut(s)	463, 788, 813, 1163, 1723
Sse9I	AATT	4 cut(s)	1251, 1556, 1571, 1636
SseBI	AGGCCT	1 cut(s)	1708
SsiI	CCGC	3 cut(s)	977, 1833, 1875
SspI	AATATT	1 cut(s)	545
SspMI	CTAG	7 cut(s)	75, 305, 902, 1319, 1341, 1530, 1893
StuI	AGGCCT	1 cut(s)	1708
StyD4I	CCNGG	3 cut(s)	562, 1708, 2000
StyI	CCWWGG	5 cut(s)	278, 318, 1090, 1395, 1500
TaaI	ACNGT	5 cut(s)	500, 837, 999, 1766, 1871
TaiI	ACGT	2 cut(s)	1033, 1608
TaqI	TCGA	5 cut(s)	23, 614, 1541, 1724, 1967
TaqII	GACCGA	1 cut(s)	181
TasI	AATT	4 cut(s)	1251, 1556, 1571, 1636
TatI	WGTACW	2 cut(s)	389, 1410
TfiI	GAWTC	7 cut(s)	206, 270, 578, 1301, 1442, 1580, 1997
Tru1I	TTAA	2 cut(s)	59, 464
Tru9I	TTAA	2 cut(s)	59, 464
TscAI	CASTG	4 cut(s)	705, 1630, 1771, 1854
TseFI	GTSAC	5 cut(s)	494, 1031, 1484, 1648, 1865
Tsp45I	GTSAC	5 cut(s)	494, 1031, 1484, 1648, 1865
TspDTI	ATGAA	8 cut(s)	140, 332, 447, 690, 1133, 1274, 1443, 1674
TspGWI	ACGGA	3 cut(s)	469, 1133, 1524
TspRI	CASTG	4 cut(s)	705, 1630, 1771, 1854
Van91I	CCANNNNNTGG	1 cut(s)	1606
Vha464I	CTTAAG	1 cut(s)	463
VpaK11BI	GGWCC	2 cut(s)	1153, 1497
XapI	RAATTY	1 cut(s)	1556
XceI	RCATGY	3 cut(s)	854, 1211, 1804
XhoI	CTCGAG	1 cut(s)	1723
XmnI	GAANNNNTTC	1 cut(s)	752
XspI	CTAG	7 cut(s)	75, 305, 902, 1319, 1341, 1530, 1893
Zsp2I	ATGCAT	2 cut(s)	478, 1213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.