pycom10g07150

Far upstream element-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0007483
Physical Location & Seq
Forward (+)
8356122 .. 8357600
1479 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g07150.1

Sequence Viewer

Length: 540 bp
ATGAAAGAAGACCAAGACCAATACCGAGAAGCCGCTACCGGCGAAAAGCGAAAGCTGGAAGACAGCAGCATCAGCATCCTACTGGCCAAGCAGAAAGCTCAGGAAATCGCCGCCCGACTTGTTAGCGACGCCGAGTCAAAGCGTCCTCGACTGGAGGAGGAGCATCCCTACCGCCAACCCAGCCCCGTCTACAACCCTTCTCCTTACCCTGTTTTTACTCCGCAATCAGGACAGTCTTATGGCTCTTCAAGCACAAGCAAGAAAATAACTATACCAAATGGGAAGGTTGGGGTGATTATTGGAAAACAAGGAGAAACGATAAAAAGTCTACAACTTCAGTCAGGGGCCAAAATCCAGATAACCCGGGATTCAGAAGCTGATCGATCTACTTCTCTTATGAGGGATGTGGACTTGACCGGTACGCCTGAGCAGATCAGTAGGGCAGAACAACTTATCAGTGATGTCCTAGCAGAGAGGCAGATGCAGGGGTTCCATCTACAAATCAGGGATTCAACTCAATGCAACCTGGATCGATCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000375 GO:0001505 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006417 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010586 GO:0010604 GO:0010605 GO:0010608 GO:0010629 GO:0010984 GO:0010985 GO:0010988 GO:0010989 GO:0016070 GO:0016071 GO:0017091 GO:0017148 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031329 GO:0031331 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0034097 GO:0034248 GO:0034249 GO:0034641 GO:0034660 GO:0035925 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043487 GO:0043488 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045019 GO:0045428 GO:0045935 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050779 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051239 GO:0051241 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0061013 GO:0061014 GO:0061157 GO:0061158 GO:0065007 GO:0065008 GO:0070013 GO:0070887 GO:0071310 GO:0071345 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1903311 GO:1903313 GO:1903426 GO:1903427 GO:1904406 GO:2000112 GO:2000113 GO:2000377 GO:2000378
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KH_1

Protein Analysis

180

Amino Acids

19.95

Weight (kDa)

6.76

Isoelectric Point (pI)

56.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KH_1 PF00013 87 - 153 8.1e-17 KH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 189, 328
AciI CCGC 4 cut(s) 33, 111, 172, 221
AclWI GGATC 1 cut(s) 537
AcoI YGGCCR 1 cut(s) 84
AcuI CTGAAG 1 cut(s) 320
AcyI GRCGYC 1 cut(s) 129
AfaI GTAC 1 cut(s) 421
AfiI CCNNNNNNNGG 1 cut(s) 227
AgeI ACCGGT 1 cut(s) 416
AgsI TTSAA 2 cut(s) 249, 513
AhdI GACNNNNNGTC 1 cut(s) 133
AjnI CCWGG 1 cut(s) 525
AluBI AGCT 3 cut(s) 55, 98, 377
AluI AGCT 3 cut(s) 55, 98, 377
AlwI GGATC 1 cut(s) 537
AlwNI CAGNNNCTG 1 cut(s) 377
Ama87I CYCGRG 1 cut(s) 363
AoxI GGCC 2 cut(s) 84, 345
ApeKI GCWGC 1 cut(s) 66
AsiGI ACCGGT 1 cut(s) 416
AspS9I GGNCC 1 cut(s) 345
AsuC2I CCSGG 2 cut(s) 364, 365
AsuHPI GGTGA 1 cut(s) 304
AvaI CYCGRG 1 cut(s) 363
BalI TGGCCA 1 cut(s) 86
BbsI GAAGAC 2 cut(s) 15, 66
BbvI GCAGC 1 cut(s) 78
BccI CCATC 1 cut(s) 501
BciT130I CCWGG 1 cut(s) 527
BcnI CCSGG 2 cut(s) 364, 365
BfaI CTAG 1 cut(s) 467
BisI GCNGC 3 cut(s) 33, 67, 111
BlsI GCNGC 3 cut(s) 34, 68, 112
Bme1390I CCNGG 3 cut(s) 364, 365, 527
BmeRI GACNNNNNGTC 1 cut(s) 133
BmeT110I CYCGRG 1 cut(s) 363
BmgT120I GGNCC 1 cut(s) 345
BmiI GGNNCC 2 cut(s) 346, 491
BmrFI CCNGG 3 cut(s) 364, 365, 527
BmsI GCATC 4 cut(s) 78, 84, 172, 471
BpiI GAAGAC 2 cut(s) 15, 66
BpmI CTGGAG 1 cut(s) 173
Bpu10I CCTNAGC 2 cut(s) 99, 426
BpuMI CCSGG 2 cut(s) 364, 365
Bsa29I ATCGAT 2 cut(s) 382, 532
BsaHI GRCGYC 1 cut(s) 129
BsaJI CCNNGG 1 cut(s) 363
BsaWI WCCGGW 1 cut(s) 416
Bsc4I CCNNNNNNNGG 1 cut(s) 227
Bse118I RCCGGY 2 cut(s) 38, 416
Bse1I ACTGG 2 cut(s) 87, 156
BseBI CCWGG 1 cut(s) 527
BseCI ATCGAT 2 cut(s) 382, 532
BseDI CCNNGG 1 cut(s) 363
BseGI GGATG 3 cut(s) 75, 163, 409
BseLI CCNNNNNNNGG 1 cut(s) 227
BseMII CTCAG 2 cut(s) 113, 417
BseNI ACTGG 2 cut(s) 87, 156
BseRI GAGGAG 2 cut(s) 170, 173
BseXI GCAGC 1 cut(s) 78
BseYI CCCAGC 1 cut(s) 179
BshFI GGCC 2 cut(s) 86, 347
BshTI ACCGGT 1 cut(s) 416
BshVI ATCGAT 2 cut(s) 382, 532
BsiHKCI CYCGRG 1 cut(s) 363
BsiSI CCGG 3 cut(s) 39, 364, 417
BslI CCNNNNNNNGG 1 cut(s) 227
BsnI GGCC 2 cut(s) 86, 347
BsoBI CYCGRG 1 cut(s) 363
Bsp143I GATC 5 cut(s) 379, 383, 432, 529, 533
BspACI CCGC 4 cut(s) 33, 111, 172, 221
BspANI GGCC 2 cut(s) 86, 347
BspCNI CTCAG 2 cut(s) 112, 418
BspDI ATCGAT 2 cut(s) 382, 532
BspLI GGNNCC 2 cut(s) 346, 491
BspPI GGATC 1 cut(s) 537
BspQI GCTCTTC 1 cut(s) 250
BsrFI RCCGGY 2 cut(s) 38, 416
BsrI ACTGG 2 cut(s) 87, 156
BssAI RCCGGY 2 cut(s) 38, 416
BssECI CCNNGG 1 cut(s) 363
BssMI GATC 5 cut(s) 379, 383, 432, 529, 533
BssNI GRCGYC 1 cut(s) 129
Bst2UI CCWGG 1 cut(s) 527
Bst4CI ACNGT 1 cut(s) 234
Bst6I CTCTTC 1 cut(s) 250
BstACI GRCGYC 1 cut(s) 129
BstDEI CTNAG 2 cut(s) 99, 426
BstF5I GGATG 3 cut(s) 75, 163, 409
BstKTI GATC 5 cut(s) 382, 386, 435, 532, 536
BstMBI GATC 5 cut(s) 379, 383, 432, 529, 533
BstMWI GCNNNNNNNGC 3 cut(s) 72, 180, 249
BstNI CCWGG 1 cut(s) 527
BstSCI CCNGG 3 cut(s) 362, 363, 525
BstV1I GCAGC 1 cut(s) 78
BstV2I GAAGAC 2 cut(s) 15, 66
Bsu15I ATCGAT 2 cut(s) 382, 532
BsuRI GGCC 2 cut(s) 86, 347
BsuTUI ATCGAT 2 cut(s) 382, 532
BtsCI GGATG 3 cut(s) 75, 163, 409
BtsIMutI CAGTG 1 cut(s) 463
CaiI CAGNNNCTG 1 cut(s) 377
Cfr10I RCCGGY 2 cut(s) 38, 416
Cfr13I GGNCC 1 cut(s) 345
Cfr9I CCCGGG 1 cut(s) 363
ClaI ATCGAT 2 cut(s) 382, 532
CseI GACGC 2 cut(s) 131, 137
Csp6I GTAC 1 cut(s) 420
CspAI ACCGGT 1 cut(s) 416
CviJI RGCY 8 cut(s) 32, 55, 86, 98, 183, 243, 347, 377
CviKI_1 RGCY 8 cut(s) 32, 55, 86, 98, 183, 243, 347, 377
CviQI GTAC 1 cut(s) 420
DdeI CTNAG 2 cut(s) 99, 426
DpnI GATC 5 cut(s) 381, 385, 434, 531, 535
DpnII GATC 5 cut(s) 379, 383, 432, 529, 533
DriI GACNNNNNGTC 1 cut(s) 133
EaeI YGGCCR 1 cut(s) 84
Eam1104I CTCTTC 1 cut(s) 250
Eam1105I GACNNNNNGTC 1 cut(s) 133
EarI CTCTTC 1 cut(s) 250
Eco57I CTGAAG 1 cut(s) 320
Eco88I CYCGRG 1 cut(s) 363
EcoRII CCWGG 1 cut(s) 525
FaiI YATR 4 cut(s) 240, 272, 398, 538
FblI GTMKAC 2 cut(s) 189, 328
Fnu4HI GCNGC 3 cut(s) 33, 67, 111
FokI GGATG 3 cut(s) 62, 150, 416
Fsp4HI GCNGC 3 cut(s) 33, 67, 111
FspBI CTAG 1 cut(s) 467
GluI GCNGC 3 cut(s) 33, 67, 111
GsaI CCCAGC 1 cut(s) 183
GsuI CTGGAG 1 cut(s) 173
HaeIII GGCC 2 cut(s) 86, 347
HapII CCGG 3 cut(s) 39, 364, 417
HgaI GACGC 2 cut(s) 131, 137
Hin1I GRCGYC 1 cut(s) 129
HinfI GANTC 3 cut(s) 134, 368, 509
HpaII CCGG 3 cut(s) 39, 364, 417
HphI GGTGA 1 cut(s) 304
Hpy166II GTNNAC 3 cut(s) 190, 329, 409
Hpy188I TCNGA 1 cut(s) 373
Hpy188III TCNNGA 3 cut(s) 101, 228, 355
Hpy8I GTNNAC 3 cut(s) 190, 329, 409
Hpy99I CGWCG 1 cut(s) 131
HpyAV CCTTC 2 cut(s) 207, 277
HpyCH4III ACNGT 1 cut(s) 234
HpyCH4V TGCA 2 cut(s) 484, 522
HpyF10VI GCNNNNNNNGC 3 cut(s) 72, 180, 249
HpyF3I CTNAG 2 cut(s) 99, 426
Hsp92I GRCGYC 1 cut(s) 129
Kzo9I GATC 5 cut(s) 379, 383, 432, 529, 533
LguI GCTCTTC 1 cut(s) 250
LmnI GCTCC 1 cut(s) 160
Lsp1109I GCAGC 1 cut(s) 78
LweI GCATC 4 cut(s) 78, 84, 172, 471
MaeI CTAG 1 cut(s) 467
MalI GATC 5 cut(s) 381, 385, 434, 531, 535
MboI GATC 5 cut(s) 379, 383, 432, 529, 533
MboII GAAGA 3 cut(s) 20, 71, 237
MlsI TGGCCA 1 cut(s) 86
MluNI TGGCCA 1 cut(s) 86
MlyI GAGTC 1 cut(s) 143
MnlI CCTC 5 cut(s) 148, 151, 156, 393, 468
Mox20I TGGCCA 1 cut(s) 86
MscI TGGCCA 1 cut(s) 86
Msp20I TGGCCA 1 cut(s) 86
MspI CCGG 3 cut(s) 39, 364, 417
MspR9I CCNGG 3 cut(s) 364, 365, 527
MvaI CCWGG 1 cut(s) 527
MwoI GCNNNNNNNGC 3 cut(s) 72, 180, 249
NciI CCSGG 2 cut(s) 364, 365
NdeII GATC 5 cut(s) 379, 383, 432, 529, 533
NlaIV GGNNCC 2 cut(s) 346, 491
NmeAIII GCCGAG 1 cut(s) 157
PciSI GCTCTTC 1 cut(s) 250
PfeI GAWTC 2 cut(s) 368, 509
PinAI ACCGGT 1 cut(s) 416
PkrI GCNGC 3 cut(s) 34, 68, 112
PleI GAGTC 1 cut(s) 142
PpsI GAGTC 1 cut(s) 142
Psp6I CCWGG 1 cut(s) 525
PspFI CCCAGC 1 cut(s) 179
PspGI CCWGG 1 cut(s) 525
PspN4I GGNNCC 2 cut(s) 346, 491
PspPI GGNCC 1 cut(s) 345
PstNI CAGNNNCTG 1 cut(s) 377
RsaI GTAC 1 cut(s) 421
RsaNI GTAC 1 cut(s) 420
SapI GCTCTTC 1 cut(s) 250
SatI GCNGC 3 cut(s) 33, 67, 111
Sau3AI GATC 5 cut(s) 379, 383, 432, 529, 533
Sau96I GGNCC 1 cut(s) 345
SchI GAGTC 1 cut(s) 143
ScrFI CCNGG 3 cut(s) 364, 365, 527
SetI ASST 5 cut(s) 57, 100, 288, 379, 528
SfaNI GCATC 4 cut(s) 78, 84, 172, 471
SmaI CCCGGG 1 cut(s) 365
SsiI CCGC 4 cut(s) 33, 111, 172, 221
SspMI CTAG 1 cut(s) 467
StyD4I CCNGG 3 cut(s) 362, 363, 525
TaaI ACNGT 1 cut(s) 234
TaqI TCGA 3 cut(s) 148, 382, 532
TauI GCSGC 2 cut(s) 35, 113
TfiI GAWTC 2 cut(s) 368, 509
TscAI CASTG 1 cut(s) 463
TseI GCWGC 1 cut(s) 66
TspDTI ATGAA 1 cut(s) 17
TspMI CCCGGG 1 cut(s) 363
TspRI CASTG 1 cut(s) 463
XmaI CCCGGG 1 cut(s) 363
XmiI GTMKAC 2 cut(s) 189, 328
XspI CTAG 1 cut(s) 467
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.