Rh6CG093000

Far upstream element-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0007483
Physical Location & Seq
Reverse (-)
10222833 .. 10223726
894 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG093000.1

Sequence Viewer

Length: 894 bp
ATGCAGCAGCCATCCTATCCCCCTTCTGGTAATTGGGCCCCGCCAGGACAACCTCCAATTCAGCAACAGCAGCCTCATTATGGGTATACACAACCTGGAGGTTATGGTACACCTCCAGCACCTCCCTCGTACTATGGTAATTATCCGGCCCAGGTAGCAGGTTGGGATCAGTCAAACCAGGTACCTTCTCAACCACCTCAGGATAGCAGTGGGTACAATTATTATGGACAACAACCACCGATGGGGTCAGCTCCCCCAAATCCTGGCTACTACAATCAGACATCTCAGGGTTATGCTCAGCAGCCACCAAATTATGATCAGGGTTATGCTCAGCAGCCACCAAGTTATGATCAGAGCTACGCTCAGCAACCTCCAAGTTACGATCAGAGTTATGCTCAGCAGCCACCAAATTATGGACAAAACATCTCTAGTCAGGCTCCAGCATCTGATCAGCAACAATATGCAACTTCTGGATATGGGCCACCTGCAGTGTCATCAAGCCTAGATGGAAGCTCTTCCGCACAAACGACTCAACCATCTTCTGCCTATGCACCTCCTTACGGCCAGCCATCGGATAACCCTCAGTCTGGGTATTGGTCTCATCCGAGCAGCACAGGCCAACCACACGCTCAAGCAGGCTATTACCAACCAAGTTACGGAGGGCAGCAGCCAGCTGAAGATGCTTCTGCAGCATCATACGGACAAGGTGGGTATGCTCAGCCAGACCCTTCTGCCAATGGAGAGTCACAGCATCAGCCAGAGCAGCAGTCACAGCCAGCTACCAATGGATATGCAGACCAGTCGTCAGCTTCTGAAGCTGAAAGGACTGGTGAGAGGAATGTAGAAGGAGATGGATCAGCCCCTCCAACAGAACCTGTTGGTTCTCAAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000375 GO:0001505 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006417 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010586 GO:0010604 GO:0010605 GO:0010608 GO:0010629 GO:0010984 GO:0010985 GO:0010988 GO:0010989 GO:0016070 GO:0016071 GO:0017091 GO:0017148 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031329 GO:0031331 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0034097 GO:0034248 GO:0034249 GO:0034641 GO:0034660 GO:0035925 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043487 GO:0043488 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045019 GO:0045428 GO:0045935 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050779 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051239 GO:0051241 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0061013 GO:0061014 GO:0061157 GO:0061158 GO:0065007 GO:0065008 GO:0070013 GO:0070887 GO:0071310 GO:0071345 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1903311 GO:1903313 GO:1903426 GO:1903427 GO:1904406 GO:2000112 GO:2000113 GO:2000377 GO:2000378
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KH_1

Protein Analysis

297

Amino Acids

31.42

Weight (kDa)

4.05

Isoelectric Point (pI)

83.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 493
Acc36I ACCTGC 2 cut(s) 149, 493
Acc65I GGTACC 1 cut(s) 181
AccB1I GGYRCC 1 cut(s) 181
AccB7I CCANNNNNTGG 2 cut(s) 263, 413
AccI GTMKAC 1 cut(s) 86
AciI CCGC 2 cut(s) 41, 519
AclWI GGATC 2 cut(s) 174, 862
AcoI YGGCCR 1 cut(s) 562
AcuI CTGAAG 2 cut(s) 696, 834
AfaI GTAC 4 cut(s) 109, 131, 183, 215
AfiI CCNNNNNNNGG 9 cut(s) 26, 80, 242, 263, 413, 560, 571, 587, 656
AhdI GACNNNNNGTC 1 cut(s) 802
AjnI CCWGG 5 cut(s) 43, 94, 150, 177, 262
AluBI AGCT 7 cut(s) 251, 357, 513, 674, 779, 809, 818
AluI AGCT 7 cut(s) 251, 357, 513, 674, 779, 809, 818
Alw26I GTCTC 1 cut(s) 603
AlwI GGATC 2 cut(s) 174, 862
AlwNI CAGNNNCTG 3 cut(s) 446, 812, 875
AoxI GGCC 5 cut(s) 36, 147, 479, 562, 616
ApaI GGGCCC 1 cut(s) 40
Asp700I GAANNNNTTC 1 cut(s) 514
Asp718I GGTACC 1 cut(s) 181
AspS9I GGNCC 4 cut(s) 36, 37, 148, 479
AsuHPI GGTGA 1 cut(s) 842
AxyI CCTNAGG 1 cut(s) 198
BaeGI GKGCMC 1 cut(s) 40
BanI GGYRCC 1 cut(s) 181
BanII GRGCYC 1 cut(s) 40
BccI CCATC 6 cut(s) 19, 235, 500, 544, 577, 845
BceAI ACGGC 1 cut(s) 577
BcgI CGANNNNNNTGC 4 cut(s) 108, 142, 783, 817
BciT130I CCWGG 5 cut(s) 45, 96, 152, 179, 264
BclI TGATCA 3 cut(s) 316, 349, 448
BcoDI GTCTC 1 cut(s) 603
BfaI CTAG 2 cut(s) 429, 503
BfmI CTRYAG 2 cut(s) 486, 687
BfuAI ACCTGC 2 cut(s) 149, 493
BlpI GCTNAGC 5 cut(s) 297, 330, 363, 396, 717
Bme1390I CCNGG 5 cut(s) 45, 96, 152, 179, 264
BmeRI GACNNNNNGTC 1 cut(s) 802
BmgT120I GGNCC 4 cut(s) 36, 37, 148, 479
BmiI GGNNCC 4 cut(s) 38, 39, 183, 438
BmrFI CCNGG 5 cut(s) 45, 96, 152, 179, 264
BmsI GCATC 4 cut(s) 452, 670, 701, 760
BplI GAGNNNNNCTC 4 cut(s) 346, 378, 379, 411
BpmI CTGGAG 3 cut(s) 99, 117, 423
Bpu1102I GCTNAGC 5 cut(s) 297, 330, 363, 396, 717
BpuEI CTTGAG 1 cut(s) 615
BsaI GGTCTC 1 cut(s) 603
BsaJI CCNNGG 1 cut(s) 150
Bsc4I CCNNNNNNNGG 9 cut(s) 26, 80, 242, 263, 413, 560, 571, 587, 656
Bse1I ACTGG 2 cut(s) 799, 832
Bse21I CCTNAGG 1 cut(s) 198
BseBI CCWGG 5 cut(s) 45, 96, 152, 179, 264
BseDI CCNNGG 1 cut(s) 150
BseGI GGATG 2 cut(s) 11, 601
BseLI CCNNNNNNNGG 9 cut(s) 26, 80, 242, 263, 413, 560, 571, 587, 656
BseMII CTCAG 8 cut(s) 212, 299, 311, 344, 377, 410, 596, 731
BseNI ACTGG 2 cut(s) 799, 832
BseSI GKGCMC 1 cut(s) 40
BshFI GGCC 5 cut(s) 38, 149, 481, 564, 618
BshNI GGYRCC 1 cut(s) 181
BsiSI CCGG 1 cut(s) 146
BslI CCNNNNNNNGG 9 cut(s) 26, 80, 242, 263, 413, 560, 571, 587, 656
BsmAI GTCTC 1 cut(s) 603
BsnI GGCC 5 cut(s) 38, 149, 481, 564, 618
Bso31I GGTCTC 1 cut(s) 603
Bsp120I GGGCCC 1 cut(s) 36
Bsp1286I GDGCHC 1 cut(s) 40
Bsp143I GATC 6 cut(s) 166, 316, 349, 382, 448, 854
Bsp1720I GCTNAGC 5 cut(s) 297, 330, 363, 396, 717
BspACI CCGC 2 cut(s) 41, 519
BspANI GGCC 5 cut(s) 38, 149, 481, 564, 618
BspCNI CTCAG 8 cut(s) 211, 298, 310, 343, 376, 409, 595, 730
BspLI GGNNCC 4 cut(s) 38, 39, 183, 438
BspMAI CTGCAG 2 cut(s) 490, 691
BspMI ACCTGC 2 cut(s) 149, 493
BspPI GGATC 2 cut(s) 174, 862
BspQI GCTCTTC 1 cut(s) 520
BspT107I GGYRCC 1 cut(s) 181
BspTNI GGTCTC 1 cut(s) 603
BsrI ACTGG 2 cut(s) 799, 832
BssECI CCNNGG 1 cut(s) 150
BssMI GATC 6 cut(s) 166, 316, 349, 382, 448, 854
BssNAI GTATAC 1 cut(s) 87
Bst1107I GTATAC 1 cut(s) 87
Bst2UI CCWGG 5 cut(s) 45, 96, 152, 179, 264
Bst6I CTCTTC 1 cut(s) 520
BstC8I GCNNGC 4 cut(s) 566, 637, 672, 777
BstDEI CTNAG 8 cut(s) 198, 285, 297, 330, 363, 396, 582, 717
BstF5I GGATG 2 cut(s) 11, 601
BstKTI GATC 6 cut(s) 169, 319, 352, 385, 451, 857
BstMAI GTCTC 1 cut(s) 603
BstMBI GATC 6 cut(s) 166, 316, 349, 382, 448, 854
BstMWI GCNNNNNNNGC 8 cut(s) 70, 155, 615, 680, 689, 763, 772, 815
BstNI CCWGG 5 cut(s) 45, 96, 152, 179, 264
BstSCI CCNGG 5 cut(s) 43, 94, 150, 177, 262
BstSFI CTRYAG 2 cut(s) 486, 687
BstSLI GKGCMC 1 cut(s) 40
BstZ17I GTATAC 1 cut(s) 87
Bsu36I CCTNAGG 1 cut(s) 198
BsuRI GGCC 5 cut(s) 38, 149, 481, 564, 618
BtsCI GGATG 2 cut(s) 11, 601
BtsI GCAGTG 2 cut(s) 214, 495
BtsIMutI CAGTG 2 cut(s) 214, 495
BveI ACCTGC 2 cut(s) 149, 493
Cac8I GCNNGC 4 cut(s) 566, 637, 672, 777
CaiI CAGNNNCTG 3 cut(s) 446, 812, 875
Cfr13I GGNCC 4 cut(s) 36, 37, 148, 479
CsiI ACCWGGT 1 cut(s) 177
Csp6I GTAC 4 cut(s) 108, 130, 182, 214
CviQI GTAC 4 cut(s) 108, 130, 182, 214
DdeI CTNAG 8 cut(s) 198, 285, 297, 330, 363, 396, 582, 717
DpnI GATC 6 cut(s) 168, 318, 351, 384, 450, 856
DpnII GATC 6 cut(s) 166, 316, 349, 382, 448, 854
DriI GACNNNNNGTC 1 cut(s) 802
EaeI YGGCCR 1 cut(s) 562
Eam1104I CTCTTC 1 cut(s) 520
Eam1105I GACNNNNNGTC 1 cut(s) 802
EarI CTCTTC 1 cut(s) 520
Eco24I GRGCYC 1 cut(s) 40
Eco31I GGTCTC 1 cut(s) 603
Eco57I CTGAAG 2 cut(s) 696, 834
Eco81I CCTNAGG 1 cut(s) 198
EcoO109I RGGNCCY 1 cut(s) 37
EcoRII CCWGG 5 cut(s) 43, 94, 150, 177, 262
EcoT38I GRGCYC 1 cut(s) 40
FauI CCCGC 1 cut(s) 48
FbaI TGATCA 3 cut(s) 316, 349, 448
FblI GTMKAC 1 cut(s) 86
FokI GGATG 1 cut(s) 588
FriOI GRGCYC 1 cut(s) 40
FspBI CTAG 2 cut(s) 429, 503
GsuI CTGGAG 3 cut(s) 99, 117, 423
HaeIII GGCC 5 cut(s) 38, 149, 481, 564, 618
HapII CCGG 1 cut(s) 146
HinfI GANTC 2 cut(s) 529, 743
HpaII CCGG 1 cut(s) 146
HphI GGTGA 1 cut(s) 842
Hpy166II GTNNAC 2 cut(s) 87, 110
Hpy188I TCNGA 7 cut(s) 279, 354, 387, 448, 574, 606, 814
Hpy188III TCNNGA 2 cut(s) 200, 471
Hpy8I GTNNAC 2 cut(s) 87, 110
HpyAV CCTTC 4 cut(s) 33, 195, 738, 839
HpyCH4V TGCA 6 cut(s) 4, 464, 488, 551, 689, 794
HpyF10VI GCNNNNNNNGC 8 cut(s) 70, 155, 615, 680, 689, 763, 772, 815
HpyF3I CTNAG 8 cut(s) 198, 285, 297, 330, 363, 396, 582, 717
KpnI GGTACC 1 cut(s) 185
Ksp22I TGATCA 3 cut(s) 316, 349, 448
Kzo9I GATC 6 cut(s) 166, 316, 349, 382, 448, 854
LguI GCTCTTC 1 cut(s) 520
LmnI GCTCC 2 cut(s) 256, 442
LweI GCATC 4 cut(s) 452, 670, 701, 760
MabI ACCWGGT 1 cut(s) 177
MaeI CTAG 2 cut(s) 429, 503
MaeIII GTNAC 4 cut(s) 377, 653, 744, 768
MalI GATC 6 cut(s) 168, 318, 351, 384, 450, 856
MboI GATC 6 cut(s) 166, 316, 349, 382, 448, 854
MboII GAAGA 3 cut(s) 507, 531, 689
MhlI GDGCHC 1 cut(s) 40
MluCI AATT 6 cut(s) 31, 57, 139, 217, 310, 409
MlyI GAGTC 2 cut(s) 523, 752
MmeI TCCRAC 1 cut(s) 890
MroXI GAANNNNTTC 1 cut(s) 514
MspA1I CMGCKG 1 cut(s) 674
MspI CCGG 1 cut(s) 146
MspR9I CCNGG 5 cut(s) 45, 96, 152, 179, 264
MvaI CCWGG 5 cut(s) 45, 96, 152, 179, 264
MwoI GCNNNNNNNGC 8 cut(s) 70, 155, 615, 680, 689, 763, 772, 815
NdeII GATC 6 cut(s) 166, 316, 349, 382, 448, 854
NlaIV GGNNCC 4 cut(s) 38, 39, 183, 438
NmuCI GTSAC 2 cut(s) 744, 768
PaqCI CACCTGC 1 cut(s) 493
PciSI GCTCTTC 1 cut(s) 520
PdmI GAANNNNTTC 1 cut(s) 514
PflMI CCANNNNNTGG 2 cut(s) 263, 413
PleI GAGTC 2 cut(s) 523, 751
PpsI GAGTC 2 cut(s) 523, 751
Psp6I CCWGG 5 cut(s) 43, 94, 150, 177, 262
PspGI CCWGG 5 cut(s) 43, 94, 150, 177, 262
PspN4I GGNNCC 4 cut(s) 38, 39, 183, 438
PspOMI GGGCCC 1 cut(s) 36
PspPI GGNCC 4 cut(s) 36, 37, 148, 479
PstI CTGCAG 2 cut(s) 490, 691
PstNI CAGNNNCTG 3 cut(s) 446, 812, 875
PvuII CAGCTG 1 cut(s) 674
RsaI GTAC 4 cut(s) 109, 131, 183, 215
RsaNI GTAC 4 cut(s) 108, 130, 182, 214
SapI GCTCTTC 1 cut(s) 520
Sau3AI GATC 6 cut(s) 166, 316, 349, 382, 448, 854
Sau96I GGNCC 4 cut(s) 36, 37, 148, 479
SchI GAGTC 2 cut(s) 523, 752
ScrFI CCNGG 5 cut(s) 45, 96, 152, 179, 264
SduI GDGCHC 1 cut(s) 40
SexAI ACCWGGT 1 cut(s) 177
SfaNI GCATC 4 cut(s) 452, 670, 701, 760
SfcI CTRYAG 2 cut(s) 486, 687
SmlI CTYRAG 1 cut(s) 630
SmoI CTYRAG 1 cut(s) 630
Sse9I AATT 6 cut(s) 31, 57, 139, 217, 310, 409
SsiI CCGC 2 cut(s) 41, 519
SspMI CTAG 2 cut(s) 429, 503
StyD4I CCNGG 5 cut(s) 43, 94, 150, 177, 262
TasI AATT 6 cut(s) 31, 57, 139, 217, 310, 409
TscAI CASTG 2 cut(s) 214, 495
TseFI GTSAC 2 cut(s) 744, 768
Tsp45I GTSAC 2 cut(s) 744, 768
TspGWI ACGGA 2 cut(s) 672, 714
TspRI CASTG 2 cut(s) 214, 495
Van91I CCANNNNNTGG 2 cut(s) 263, 413
XmiI GTMKAC 1 cut(s) 86
XmnI GAANNNNTTC 1 cut(s) 514
XspI CTAG 2 cut(s) 429, 503
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.