Ribonuclease H protein
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_2g06980 |
| malus_domestica | MD00G1050700.v1.1 MD10G1088600.v1.1 |
| prunus_persica | Prupe.8G115800_v2.0.a1 Prupe.8G115800_v2.0.a1 |
| pyrus_communis | pycom05g06770 pycom10g07150 pycom10g07160 |
| rosa_chinensis | RchiOBHm_Chr4g0444281 RchiOBHm_Chr6g0259341 |
| rosa_laevigata | RLG00000014538 |
| rosa_multiflora | Rmu_sc0004593.1_g000005 Rmu_sc0025785.1_g000001 Rmu_sc0031504.1_g000001 |
| rosa_roxburghii | Rroxscaffold_1G00009040 Rroxscaffold_6G00423380 Rroxscaffold_7G00206580 |
| rosa_rugosa | Rorug02G0459600 Rorug05G0587700 |
| rosa_samantha | Rh6AG103700 Rh6BG096900 Rh6CG093000 Rh6CG093100 Rh6DG086900 |
| rosa_wichuraiana | Rw6G008950 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 2550, 6167 |
| AarI | CACCTGC | 1 cut(s) | 6920 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 3377 |
| Acc36I | ACCTGC | 4 cut(s) | 1405, 5371, 6907, 6920 |
| Acc65I | GGTACC | 1 cut(s) | 5790 |
| AccB1I | GGYRCC | 2 cut(s) | 5517, 5790 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 4448 |
| AccI | GTMKAC | 5 cut(s) | 723, 1031, 1662, 2373, 4953 |
| AccII | CGCG | 1 cut(s) | 1717 |
| AciI | CCGC | 7 cut(s) | 301, 829, 2139, 2497, 2951, 5191, 5695 |
| AclI | AACGTT | 2 cut(s) | 4858, 5500 |
| AcoI | YGGCCR | 4 cut(s) | 3, 3592, 4470, 6448 |
| AcuI | CTGAAG | 9 cut(s) | 513, 1216, 1572, 2115, 2892, 3039, 4352, 4361, 5366 |
| AcyI | GRCGYC | 1 cut(s) | 3505 |
| AfeI | AGCGCT | 1 cut(s) | 6332 |
| AflII | CTTAAG | 2 cut(s) | 4990, 5012 |
| AflIII | ACRYGT | 3 cut(s) | 2699, 5030, 6496 |
| AhdI | GACNNNNNGTC | 3 cut(s) | 5014, 5620, 5655 |
| AhlI | ACTAGT | 1 cut(s) | 1565 |
| AjnI | CCWGG | 6 cut(s) | 1042, 1778, 4441, 4572, 5355, 5998 |
| AleI | CACNNNNGTG | 1 cut(s) | 1333 |
| Alw21I | GWGCWC | 4 cut(s) | 20, 1020, 1330, 4696 |
| Alw44I | GTGCAC | 2 cut(s) | 16, 1326 |
| AlwNI | CAGNNNCTG | 5 cut(s) | 1779, 2212, 2270, 2417, 4448 |
| Ama87I | CYCGRG | 3 cut(s) | 1007, 1608, 2504 |
| Aor51HI | AGCGCT | 1 cut(s) | 6332 |
| ApaI | GGGCCC | 1 cut(s) | 1343 |
| ApaLI | GTGCAC | 2 cut(s) | 16, 1326 |
| AseI | ATTAAT | 3 cut(s) | 1445, 2466, 5157 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 4412, 6007 |
| Asp718I | GGTACC | 1 cut(s) | 5790 |
| AspLEI | GCGC | 6 cut(s) | 672, 1182, 1717, 2020, 3437, 6333 |
| AsuC2I | CCSGG | 2 cut(s) | 633, 2560 |
| AsuII | TTCGAA | 2 cut(s) | 1912, 4544 |
| AvaI | CYCGRG | 3 cut(s) | 1007, 1608, 2504 |
| AvaII | GGWCC | 8 cut(s) | 37, 380, 549, 826, 2176, 4436, 5663, 6338 |
| BaeGI | GKGCMC | 4 cut(s) | 20, 1330, 1343, 5520 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 2178, 2211, 4833, 4866 |
| BalI | TGGCCA | 4 cut(s) | 5, 3594, 4472, 6450 |
| BamHI | GGATCC | 1 cut(s) | 2932 |
| BanI | GGYRCC | 2 cut(s) | 5517, 5790 |
| BanII | GRGCYC | 3 cut(s) | 1020, 1343, 4002 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 3012, 3044 |
| BauI | CACGAG | 1 cut(s) | 19 |
| BbsI | GAAGAC | 7 cut(s) | 78, 101, 1530, 3840, 4338, 4908, 6367 |
| Bbv12I | GWGCWC | 4 cut(s) | 20, 1020, 1330, 4696 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 4154, 4188 |
| BciT130I | CCWGG | 6 cut(s) | 1044, 1780, 4443, 4574, 5357, 6000 |
| BciVI | GTATCC | 4 cut(s) | 320, 1540, 1555, 4834 |
| BclI | TGATCA | 3 cut(s) | 3273, 4852, 4996 |
| BcnI | CCSGG | 2 cut(s) | 633, 2560 |
| BcuI | ACTAGT | 1 cut(s) | 1565 |
| BfmI | CTRYAG | 8 cut(s) | 1136, 1797, 3198, 3948, 4656, 5364, 5757, 6927 |
| BfoI | RGCGCY | 2 cut(s) | 3438, 6334 |
| BfrI | CTTAAG | 2 cut(s) | 4990, 5012 |
| BfuAI | ACCTGC | 4 cut(s) | 1405, 5371, 6907, 6920 |
| BfuI | GTATCC | 4 cut(s) | 320, 1540, 1555, 4834 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 3637 |
| BglII | AGATCT | 3 cut(s) | 1405, 4303, 6410 |
| Bme1390I | CCNGG | 8 cut(s) | 633, 1044, 1780, 2560, 4443, 4574, 5357, 6000 |
| Bme18I | GGWCC | 8 cut(s) | 37, 380, 549, 826, 2176, 4436, 5663, 6338 |
| BmeRI | GACNNNNNGTC | 3 cut(s) | 5014, 5620, 5655 |
| BmeT110I | CYCGRG | 3 cut(s) | 1007, 1608, 2504 |
| BmrFI | CCNGG | 8 cut(s) | 633, 1044, 1780, 2560, 4443, 4574, 5357, 6000 |
| BmrI | ACTGGG | 4 cut(s) | 1076, 2396, 5516, 6133 |
| BmuI | ACTGGG | 4 cut(s) | 1076, 2396, 5516, 6133 |
| BoxI | GACNNNNGTC | 2 cut(s) | 2492, 5565 |
| BpiI | GAAGAC | 7 cut(s) | 78, 101, 1530, 3840, 4338, 4908, 6367 |
| BpmI | CTGGAG | 5 cut(s) | 239, 864, 4425, 5673, 6194 |
| Bpu14I | TTCGAA | 2 cut(s) | 1912, 4544 |
| BpuEI | CTTGAG | 6 cut(s) | 1006, 2176, 2906, 5334, 5756, 6771 |
| BpuMI | CCSGG | 2 cut(s) | 633, 2560 |
| Bsa29I | ATCGAT | 1 cut(s) | 2125 |
| BsaBI | GATNNNNATC | 1 cut(s) | 3912 |
| BsaHI | GRCGYC | 1 cut(s) | 3505 |
| BsaI | GGTCTC | 2 cut(s) | 5244, 6883 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1024, 1054, 4665, 4695 |
| Bse118I | RCCGGY | 1 cut(s) | 2338 |
| Bse3DI | GCAATG | 5 cut(s) | 134, 311, 4484, 4925, 6489 |
| Bse8I | GATNNNNATC | 1 cut(s) | 3912 |
| BseBI | CCWGG | 6 cut(s) | 1044, 1780, 4443, 4574, 5357, 6000 |
| BseCI | ATCGAT | 1 cut(s) | 2125 |
| BseJI | GATNNNNATC | 1 cut(s) | 3912 |
| BseMI | GCAATG | 5 cut(s) | 134, 311, 4484, 4925, 6489 |
| BseRI | GAGGAG | 7 cut(s) | 252, 295, 727, 1193, 2786, 4488, 6642 |
| BseSI | GKGCMC | 4 cut(s) | 20, 1330, 1343, 5520 |
| BseYI | CCCAGC | 2 cut(s) | 324, 5513 |
| BsgI | GTGCAG | 5 cut(s) | 839, 1773, 5506, 5979, 6321 |
| Bsh1236I | CGCG | 1 cut(s) | 1717 |
| Bsh1285I | CGRYCG | 2 cut(s) | 82, 4957 |
| BshNI | GGYRCC | 2 cut(s) | 5517, 5790 |
| BshVI | ATCGAT | 1 cut(s) | 2125 |
| BsiEI | CGRYCG | 2 cut(s) | 82, 4957 |
| BsiHKAI | GWGCWC | 4 cut(s) | 20, 1020, 1330, 4696 |
| BsiHKCI | CYCGRG | 3 cut(s) | 1007, 1608, 2504 |
| BsiSI | CCGG | 3 cut(s) | 632, 2339, 2559 |
| BslFI | GGGAC | 6 cut(s) | 535, 2710, 2933, 3403, 4303, 5713 |
| BsmFI | GGGAC | 6 cut(s) | 535, 2710, 2933, 3403, 4303, 5713 |
| BsmI | GAATGC | 2 cut(s) | 1632, 5075 |
| Bso31I | GGTCTC | 2 cut(s) | 5244, 6883 |
| BsoBI | CYCGRG | 3 cut(s) | 1007, 1608, 2504 |
| Bsp119I | TTCGAA | 2 cut(s) | 1912, 4544 |
| Bsp120I | GGGCCC | 1 cut(s) | 1339 |
| Bsp1286I | GDGCHC | 7 cut(s) | 20, 1020, 1330, 1343, 4002, 4696, 5520 |
| Bsp1407I | TGTACA | 2 cut(s) | 1279, 4636 |
| Bsp19I | CCATGG | 4 cut(s) | 2766, 2961, 4668, 4741 |
| BspACI | CCGC | 7 cut(s) | 301, 829, 2139, 2497, 2951, 5191, 5695 |
| BspDI | ATCGAT | 1 cut(s) | 2125 |
| BspFNI | CGCG | 1 cut(s) | 1717 |
| BspHI | TCATGA | 3 cut(s) | 2605, 3931, 5644 |
| BspMAI | CTGCAG | 4 cut(s) | 1140, 5368, 5761, 6931 |
| BspMI | ACCTGC | 4 cut(s) | 1405, 5371, 6907, 6920 |
| BspQI | GCTCTTC | 1 cut(s) | 1770 |
| BspT104I | TTCGAA | 2 cut(s) | 1912, 4544 |
| BspT107I | GGYRCC | 2 cut(s) | 5517, 5790 |
| BspTI | CTTAAG | 2 cut(s) | 4990, 5012 |
| BspTNI | GGTCTC | 2 cut(s) | 5244, 6883 |
| BsrDI | GCAATG | 5 cut(s) | 134, 311, 4484, 4925, 6489 |
| BsrFI | RCCGGY | 1 cut(s) | 2338 |
| BsrGI | TGTACA | 2 cut(s) | 1279, 4636 |
| BssAI | RCCGGY | 1 cut(s) | 2338 |
| BssNI | GRCGYC | 1 cut(s) | 3505 |
| BssSI | CACGAG | 1 cut(s) | 19 |
| Bst2BI | CACGAG | 1 cut(s) | 19 |
| Bst2UI | CCWGG | 6 cut(s) | 1044, 1780, 4443, 4574, 5357, 6000 |
| Bst6I | CTCTTC | 9 cut(s) | 19, 219, 658, 1548, 1770, 1905, 2962, 3852, 5385 |
| BstACI | GRCGYC | 1 cut(s) | 3505 |
| BstAFI | CTTAAG | 2 cut(s) | 4990, 5012 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 745, 4490, 4931 |
| BstAUI | TGTACA | 2 cut(s) | 1279, 4636 |
| BstBI | TTCGAA | 2 cut(s) | 1912, 4544 |
| BstDSI | CCRYGG | 4 cut(s) | 2766, 2961, 4668, 4741 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1208 |
| BstFNI | CGCG | 1 cut(s) | 1717 |
| BstH2I | RGCGCY | 2 cut(s) | 3438, 6334 |
| BstHHI | GCGC | 6 cut(s) | 672, 1182, 1717, 2020, 3437, 6333 |
| BstMCI | CGRYCG | 2 cut(s) | 82, 4957 |
| BstNI | CCWGG | 6 cut(s) | 1044, 1780, 4443, 4574, 5357, 6000 |
| BstNSI | RCATGY | 9 cut(s) | 769, 2165, 2703, 4169, 5034, 5494, 6281, 6407, 6500 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 2492, 5565 |
| BstSCI | CCNGG | 8 cut(s) | 631, 1042, 1778, 2558, 4441, 4572, 5355, 5998 |
| BstSFI | CTRYAG | 8 cut(s) | 1136, 1797, 3198, 3948, 4656, 5364, 5757, 6927 |
| BstSLI | GKGCMC | 4 cut(s) | 20, 1330, 1343, 5520 |
| BstUI | CGCG | 1 cut(s) | 1717 |
| BstV2I | GAAGAC | 7 cut(s) | 78, 101, 1530, 3840, 4338, 4908, 6367 |
| BstX2I | RGATCY | 9 cut(s) | 1405, 2026, 2932, 3472, 4303, 5122, 5885, 6258, 6410 |
| BstYI | RGATCY | 9 cut(s) | 1405, 2026, 2932, 3472, 4303, 5122, 5885, 6258, 6410 |
| Bsu15I | ATCGAT | 1 cut(s) | 2125 |
| BsuI | GTATCC | 4 cut(s) | 320, 1540, 1555, 4834 |
| BsuTUI | ATCGAT | 1 cut(s) | 2125 |
| BtgI | CCRYGG | 4 cut(s) | 2766, 2961, 4668, 4741 |
| BtsI | GCAGTG | 1 cut(s) | 1982 |
| BveI | ACCTGC | 4 cut(s) | 1405, 5371, 6907, 6920 |
| CaiI | CAGNNNCTG | 5 cut(s) | 1779, 2212, 2270, 2417, 4448 |
| CciI | TCATGA | 3 cut(s) | 2605, 3931, 5644 |
| CfoI | GCGC | 6 cut(s) | 672, 1182, 1717, 2020, 3437, 6333 |
| Cfr10I | RCCGGY | 1 cut(s) | 2338 |
| ClaI | ATCGAT | 1 cut(s) | 2125 |
| CseI | GACGC | 1 cut(s) | 3513 |
| DraI | TTTAAA | 4 cut(s) | 3343, 3814, 5391, 5781 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 3377 |
| DriI | GACNNNNNGTC | 3 cut(s) | 5014, 5620, 5655 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 3377 |
| EaeI | YGGCCR | 4 cut(s) | 3, 3592, 4470, 6448 |
| Eam1104I | CTCTTC | 9 cut(s) | 19, 219, 658, 1548, 1770, 1905, 2962, 3852, 5385 |
| Eam1105I | GACNNNNNGTC | 3 cut(s) | 5014, 5620, 5655 |
| EarI | CTCTTC | 9 cut(s) | 19, 219, 658, 1548, 1770, 1905, 2962, 3852, 5385 |
| Ecl136II | GAGCTC | 1 cut(s) | 1018 |
| Eco147I | AGGCCT | 1 cut(s) | 2877 |
| Eco24I | GRGCYC | 3 cut(s) | 1020, 1343, 4002 |
| Eco31I | GGTCTC | 2 cut(s) | 5244, 6883 |
| Eco32I | GATATC | 2 cut(s) | 1266, 4234 |
| Eco47I | GGWCC | 8 cut(s) | 37, 380, 549, 826, 2176, 4436, 5663, 6338 |
| Eco47III | AGCGCT | 1 cut(s) | 6332 |
| Eco53kI | GAGCTC | 1 cut(s) | 1018 |
| Eco57I | CTGAAG | 9 cut(s) | 513, 1216, 1572, 2115, 2892, 3039, 4352, 4361, 5366 |
| Eco88I | CYCGRG | 3 cut(s) | 1007, 1608, 2504 |
| EcoICRI | GAGCTC | 1 cut(s) | 1018 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1208 |
| EcoO109I | RGGNCCY | 6 cut(s) | 209, 549, 1339, 1340, 4436, 6338 |
| EcoRI | GAATTC | 1 cut(s) | 5713 |
| EcoRII | CCWGG | 6 cut(s) | 1042, 1778, 4441, 4572, 5355, 5998 |
| EcoRV | GATATC | 2 cut(s) | 1266, 4234 |
| EcoT22I | ATGCAT | 3 cut(s) | 600, 646, 5586 |
| EcoT38I | GRGCYC | 3 cut(s) | 1020, 1343, 4002 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2281, 2313 |
| FaqI | GGGAC | 6 cut(s) | 535, 2710, 2933, 3403, 4303, 5713 |
| FauI | CCCGC | 2 cut(s) | 2958, 5688 |
| FauNDI | CATATG | 6 cut(s) | 839, 1332, 2908, 4029, 4688, 5564 |
| FbaI | TGATCA | 3 cut(s) | 3273, 4852, 4996 |
| FblI | GTMKAC | 5 cut(s) | 723, 1031, 1662, 2373, 4953 |
| FriOI | GRGCYC | 3 cut(s) | 1020, 1343, 4002 |
| GlaI | GCGC | 6 cut(s) | 671, 1181, 1716, 2019, 3436, 6332 |
| GsaI | CCCAGC | 2 cut(s) | 328, 5517 |
| GsuI | CTGGAG | 5 cut(s) | 239, 864, 4425, 5673, 6194 |
| HaeII | RGCGCY | 2 cut(s) | 3438, 6334 |
| HapII | CCGG | 3 cut(s) | 632, 2339, 2559 |
| HgaI | GACGC | 1 cut(s) | 3513 |
| HhaI | GCGC | 6 cut(s) | 672, 1182, 1717, 2020, 3437, 6333 |
| Hin1I | GRCGYC | 1 cut(s) | 3505 |
| Hin6I | GCGC | 6 cut(s) | 670, 1180, 1715, 2018, 3435, 6331 |
| HinP1I | GCGC | 6 cut(s) | 670, 1180, 1715, 2018, 3435, 6331 |
| HincII | GTYRAC | 5 cut(s) | 1663, 1929, 3157, 4954, 5397 |
| HindII | GTYRAC | 5 cut(s) | 1663, 1929, 3157, 4954, 5397 |
| HindIII | AAGCTT | 6 cut(s) | 1149, 2005, 2457, 2820, 3143, 3402 |
| HpaI | GTTAAC | 1 cut(s) | 1929 |
| HpaII | CCGG | 3 cut(s) | 632, 2339, 2559 |
| Hpy99I | CGWCG | 2 cut(s) | 80, 5618 |
| HpyCH4IV | ACGT | 6 cut(s) | 100, 1034, 4153, 4858, 4981, 5500 |
| HpySE526I | ACGT | 6 cut(s) | 100, 1034, 4153, 4858, 4981, 5500 |
| Hsp92I | GRCGYC | 1 cut(s) | 3505 |
| HspAI | GCGC | 6 cut(s) | 670, 1180, 1715, 2018, 3435, 6331 |
| KflI | GGGWCCC | 1 cut(s) | 549 |
| KpnI | GGTACC | 1 cut(s) | 5794 |
| Ksp22I | TGATCA | 3 cut(s) | 3273, 4852, 4996 |
| KspAI | GTTAAC | 1 cut(s) | 1929 |
| LguI | GCTCTTC | 1 cut(s) | 1770 |
| LmnI | GCTCC | 6 cut(s) | 1045, 2799, 3547, 4330, 5698, 6727 |
| MaeII | ACGT | 6 cut(s) | 100, 1034, 4153, 4858, 4981, 5500 |
| MfeI | CAATTG | 2 cut(s) | 4845, 4920 |
| MflI | RGATCY | 9 cut(s) | 1405, 2026, 2932, 3472, 4303, 5122, 5885, 6258, 6410 |
| MhlI | GDGCHC | 7 cut(s) | 20, 1020, 1330, 1343, 4002, 4696, 5520 |
| MlsI | TGGCCA | 4 cut(s) | 5, 3594, 4472, 6450 |
| MluNI | TGGCCA | 4 cut(s) | 5, 3594, 4472, 6450 |
| MmeI | TCCRAC | 8 cut(s) | 519, 750, 1835, 2203, 3588, 3760, 3783, 4774 |
| Mox20I | TGGCCA | 4 cut(s) | 5, 3594, 4472, 6450 |
| Mph1103I | ATGCAT | 3 cut(s) | 600, 646, 5586 |
| MroXI | GAANNNNTTC | 2 cut(s) | 4412, 6007 |
| MscI | TGGCCA | 4 cut(s) | 5, 3594, 4472, 6450 |
| MslI | CAYNNNNRTG | 7 cut(s) | 764, 838, 945, 1333, 1637, 5589, 6372 |
| Msp20I | TGGCCA | 4 cut(s) | 5, 3594, 4472, 6450 |
| MspA1I | CMGCKG | 2 cut(s) | 823, 2141 |
| MspCI | CTTAAG | 2 cut(s) | 4990, 5012 |
| MspI | CCGG | 3 cut(s) | 632, 2339, 2559 |
| MspR9I | CCNGG | 8 cut(s) | 633, 1044, 1780, 2560, 4443, 4574, 5357, 6000 |
| MunI | CAATTG | 2 cut(s) | 4845, 4920 |
| Mva1269I | GAATGC | 2 cut(s) | 1632, 5075 |
| MvaI | CCWGG | 6 cut(s) | 1044, 1780, 4443, 4574, 5357, 6000 |
| MvnI | CGCG | 1 cut(s) | 1717 |
| NciI | CCSGG | 2 cut(s) | 633, 2560 |
| NcoI | CCATGG | 4 cut(s) | 2766, 2961, 4668, 4741 |
| NdeI | CATATG | 6 cut(s) | 839, 1332, 2908, 4029, 4688, 5564 |
| NmeAIII | GCCGAG | 1 cut(s) | 6824 |
| NmuCI | GTSAC | 5 cut(s) | 101, 421, 1213, 2588, 2753 |
| NsiI | ATGCAT | 3 cut(s) | 600, 646, 5586 |
| NspI | RCATGY | 9 cut(s) | 769, 2165, 2703, 4169, 5034, 5494, 6281, 6407, 6500 |
| NspV | TTCGAA | 2 cut(s) | 1912, 4544 |
| OliI | CACNNNNGTG | 1 cut(s) | 1333 |
| PaeI | GCATGC | 2 cut(s) | 4169, 6281 |
| PaeR7I | CTCGAG | 1 cut(s) | 2504 |
| PagI | TCATGA | 3 cut(s) | 2605, 3931, 5644 |
| PaqCI | CACCTGC | 1 cut(s) | 6920 |
| PceI | AGGCCT | 1 cut(s) | 2877 |
| PciI | ACATGT | 3 cut(s) | 2699, 5030, 6496 |
| PciSI | GCTCTTC | 1 cut(s) | 1770 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 75 |
| PctI | GAATGC | 2 cut(s) | 1632, 5075 |
| PdmI | GAANNNNTTC | 2 cut(s) | 4412, 6007 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 4448 |
| PfoI | TCCNGGA | 1 cut(s) | 2558 |
| Ple19I | CGATCG | 1 cut(s) | 82 |
| PpuMI | RGGWCCY | 3 cut(s) | 549, 4436, 6338 |
| PscI | ACATGT | 3 cut(s) | 2699, 5030, 6496 |
| PshAI | GACNNNNGTC | 2 cut(s) | 2492, 5565 |
| PshBI | ATTAAT | 3 cut(s) | 1445, 2466, 5157 |
| PsiI | TTATAA | 2 cut(s) | 2550, 6167 |
| Psp124BI | GAGCTC | 1 cut(s) | 1020 |
| Psp1406I | AACGTT | 2 cut(s) | 4858, 5500 |
| Psp5II | RGGWCCY | 3 cut(s) | 549, 4436, 6338 |
| Psp6I | CCWGG | 6 cut(s) | 1042, 1778, 4441, 4572, 5355, 5998 |
| PspFI | CCCAGC | 2 cut(s) | 324, 5513 |
| PspGI | CCWGG | 6 cut(s) | 1042, 1778, 4441, 4572, 5355, 5998 |
| PspOMI | GGGCCC | 1 cut(s) | 1339 |
| PspPPI | RGGWCCY | 3 cut(s) | 549, 4436, 6338 |
| PstI | CTGCAG | 4 cut(s) | 1140, 5368, 5761, 6931 |
| PstNI | CAGNNNCTG | 5 cut(s) | 1779, 2212, 2270, 2417, 4448 |
| PsuI | RGATCY | 9 cut(s) | 1405, 2026, 2932, 3472, 4303, 5122, 5885, 6258, 6410 |
| PvuI | CGATCG | 1 cut(s) | 82 |
| PvuII | CAGCTG | 1 cut(s) | 823 |
| RseI | CAYNNNNRTG | 7 cut(s) | 764, 838, 945, 1333, 1637, 5589, 6372 |
| SacI | GAGCTC | 1 cut(s) | 1020 |
| SalI | GTCGAC | 2 cut(s) | 1661, 4952 |
| SapI | GCTCTTC | 1 cut(s) | 1770 |
| ScrFI | CCNGG | 8 cut(s) | 633, 1044, 1780, 2560, 4443, 4574, 5357, 6000 |
| SduI | GDGCHC | 7 cut(s) | 20, 1020, 1330, 1343, 4002, 4696, 5520 |
| SfcI | CTRYAG | 8 cut(s) | 1136, 1797, 3198, 3948, 4656, 5364, 5757, 6927 |
| Sfr274I | CTCGAG | 1 cut(s) | 2504 |
| SfuI | TTCGAA | 2 cut(s) | 1912, 4544 |
| SinI | GGWCC | 8 cut(s) | 37, 380, 549, 826, 2176, 4436, 5663, 6338 |
| SlaI | CTCGAG | 1 cut(s) | 2504 |
| SmiMI | CAYNNNNRTG | 7 cut(s) | 764, 838, 945, 1333, 1637, 5589, 6372 |
| SmlI | CTYRAG | 9 cut(s) | 985, 2155, 2504, 2885, 4990, 5012, 5349, 5771, 6786 |
| SmoI | CTYRAG | 9 cut(s) | 985, 2155, 2504, 2885, 4990, 5012, 5349, 5771, 6786 |
| SpeI | ACTAGT | 1 cut(s) | 1565 |
| SphI | GCATGC | 2 cut(s) | 4169, 6281 |
| SseBI | AGGCCT | 1 cut(s) | 2877 |
| SsiI | CCGC | 7 cut(s) | 301, 829, 2139, 2497, 2951, 5191, 5695 |
| SstI | GAGCTC | 1 cut(s) | 1020 |
| StuI | AGGCCT | 1 cut(s) | 2877 |
| StyD4I | CCNGG | 8 cut(s) | 631, 1042, 1778, 2558, 4441, 4572, 5355, 5998 |
| TaiI | ACGT | 6 cut(s) | 103, 1037, 4156, 4861, 4984, 5503 |
| TaqII | GACCGA | 1 cut(s) | 54 |
| TatI | WGTACW | 5 cut(s) | 532, 1279, 4636, 6189, 6515 |
| TauI | GCSGC | 1 cut(s) | 304 |
| TseFI | GTSAC | 5 cut(s) | 101, 421, 1213, 2588, 2753 |
| Tsp45I | GTSAC | 5 cut(s) | 101, 421, 1213, 2588, 2753 |
| TspGWI | ACGGA | 5 cut(s) | 2352, 2890, 4417, 6428, 6440 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 4448 |
| Vha464I | CTTAAG | 2 cut(s) | 4990, 5012 |
| VneI | GTGCAC | 2 cut(s) | 16, 1326 |
| VpaK11BI | GGWCC | 8 cut(s) | 37, 380, 549, 826, 2176, 4436, 5663, 6338 |
| VspI | ATTAAT | 3 cut(s) | 1445, 2466, 5157 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1208 |
| XbaI | TCTAGA | 3 cut(s) | 1616, 3838, 4939 |
| XceI | RCATGY | 9 cut(s) | 769, 2165, 2703, 4169, 5034, 5494, 6281, 6407, 6500 |
| XcmI | CCANNNNNNNNNTGG | 6 cut(s) | 820, 1776, 1818, 4748, 5413, 6218 |
| XhoI | CTCGAG | 1 cut(s) | 2504 |
| XmiI | GTMKAC | 5 cut(s) | 723, 1031, 1662, 2373, 4953 |
| XmnI | GAANNNNTTC | 2 cut(s) | 4412, 6007 |
| Zsp2I | ATGCAT | 3 cut(s) | 600, 646, 5586 |