RchiOBHm_Chr4g0444281

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0007483
Physical Location & Seq
Reverse (-)
65093206 .. 65093600
395 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ41198

Sequence Viewer

Length: 363 bp
ATGTTTACTTTCCTGGTGATATCTGTCAAATATGCTCACAGTTTGGTCATTTTGCTAAAACTTGTCCTCAAAGATCTGCCCCTAGGCAAGTTTTTGCTTCTAGATCTTATATGCATTGTCGTTTTTGTTCCAAGACAGGTCATAGTGCAGCTGAATGTCTTTGTAAGCATAAATATGCCTATCAACCAACACCTCAAGCTGTGGTTACTTCCTTCTCAACTCAAACTATGCCAGCATCATCCTATCAATCTCAACAAGAATTTTGGCCAGCTAATACTTTGTCCTCTAGCTGAGTTCAATGCCAAGAGTCTAACTCAAGGTTCCTGTATAGCCTTGAAGTCATTTAATTCTGCAGCAACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

120

Amino Acids

13.48

Weight (kDa)

9.59

Isoelectric Point (pI)

25.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 265
AcsI RAATTY 1 cut(s) 259
AgsI TTSAA 2 cut(s) 298, 337
AjnI CCWGG 1 cut(s) 12
AluBI AGCT 4 cut(s) 151, 199, 271, 290
AluI AGCT 4 cut(s) 151, 199, 271, 290
AoxI GGCC 1 cut(s) 265
ApeKI GCWGC 2 cut(s) 148, 353
ApoI RAATTY 1 cut(s) 259
AspA2I CCTAGG 1 cut(s) 82
AsuHPI GGTGA 1 cut(s) 28
AvrII CCTAGG 1 cut(s) 82
BalI TGGCCA 1 cut(s) 267
BbvI GCAGC 1 cut(s) 160
BciT130I CCWGG 1 cut(s) 14
BfaI CTAG 3 cut(s) 83, 101, 287
BfmI CTRYAG 1 cut(s) 351
BglII AGATCT 2 cut(s) 73, 103
BisI GCNGC 2 cut(s) 149, 354
BlnI CCTAGG 1 cut(s) 82
BlsI GCNGC 2 cut(s) 150, 355
Bme1390I CCNGG 1 cut(s) 14
BmiI GGNNCC 1 cut(s) 322
BmrFI CCNGG 1 cut(s) 14
BmsI GCATC 1 cut(s) 244
BplI GAGNNNNNCTC 2 cut(s) 298, 330
BpuEI CTTGAG 2 cut(s) 179, 300
BsaJI CCNNGG 1 cut(s) 82
BseBI CCWGG 1 cut(s) 14
BseDI CCNNGG 1 cut(s) 82
BseGI GGATG 1 cut(s) 238
BseMII CTCAG 1 cut(s) 282
BseXI GCAGC 1 cut(s) 160
BsgI GTGCAG 1 cut(s) 167
BshFI GGCC 1 cut(s) 267
BsnI GGCC 1 cut(s) 267
Bsp143I GATC 2 cut(s) 73, 103
BspANI GGCC 1 cut(s) 267
BspCNI CTCAG 1 cut(s) 283
BspLI GGNNCC 1 cut(s) 322
BspMAI CTGCAG 1 cut(s) 355
BssECI CCNNGG 1 cut(s) 82
BssMI GATC 2 cut(s) 73, 103
BssT1I CCWWGG 1 cut(s) 82
Bst2UI CCWGG 1 cut(s) 14
Bst4CI ACNGT 1 cut(s) 41
BstC8I GCNNGC 2 cut(s) 233, 269
BstDEI CTNAG 1 cut(s) 291
BstF5I GGATG 1 cut(s) 238
BstKTI GATC 2 cut(s) 76, 106
BstMBI GATC 2 cut(s) 73, 103
BstNI CCWGG 1 cut(s) 14
BstSCI CCNGG 1 cut(s) 12
BstSFI CTRYAG 1 cut(s) 351
BstV1I GCAGC 1 cut(s) 160
BstX2I RGATCY 2 cut(s) 73, 103
BstYI RGATCY 2 cut(s) 73, 103
BsuRI GGCC 1 cut(s) 267
BtsCI GGATG 1 cut(s) 238
Cac8I GCNNGC 2 cut(s) 233, 269
CviJI RGCY 6 cut(s) 151, 199, 267, 271, 290, 332
CviKI_1 RGCY 6 cut(s) 151, 199, 267, 271, 290, 332
DdeI CTNAG 1 cut(s) 291
DpnI GATC 2 cut(s) 75, 105
DpnII GATC 2 cut(s) 73, 103
EaeI YGGCCR 1 cut(s) 265
Eco130I CCWWGG 1 cut(s) 82
Eco32I GATATC 1 cut(s) 21
EcoRII CCWGG 1 cut(s) 12
EcoRV GATATC 1 cut(s) 21
EcoT14I CCWWGG 1 cut(s) 82
EcoT22I ATGCAT 1 cut(s) 116
ErhI CCWWGG 1 cut(s) 82
FaiI YATR 8 cut(s) 33, 110, 112, 143, 170, 176, 229, 329
Fnu4HI GCNGC 2 cut(s) 149, 354
FokI GGATG 1 cut(s) 225
Fsp4HI GCNGC 2 cut(s) 149, 354
FspBI CTAG 3 cut(s) 83, 101, 287
GluI GCNGC 2 cut(s) 149, 354
HaeIII GGCC 1 cut(s) 267
HinfI GANTC 1 cut(s) 307
HphI GGTGA 1 cut(s) 28
Hpy166II GTNNAC 1 cut(s) 6
Hpy188III TCNNGA 1 cut(s) 101
Hpy8I GTNNAC 1 cut(s) 6
HpyAV CCTTC 1 cut(s) 222
HpyCH4III ACNGT 1 cut(s) 41
HpyCH4V TGCA 3 cut(s) 114, 148, 353
HpyF3I CTNAG 1 cut(s) 291
Kzo9I GATC 2 cut(s) 73, 103
LpnPI CCDG 5 cut(s) 26, 122, 245, 281, 337
Lsp1109I GCAGC 1 cut(s) 160
LweI GCATC 1 cut(s) 244
MaeI CTAG 3 cut(s) 83, 101, 287
MaeIII GTNAC 1 cut(s) 204
MalI GATC 2 cut(s) 75, 105
MboI GATC 2 cut(s) 73, 103
MflI RGATCY 2 cut(s) 73, 103
MlsI TGGCCA 1 cut(s) 267
MluCI AATT 2 cut(s) 259, 346
MluNI TGGCCA 1 cut(s) 267
MlyI GAGTC 1 cut(s) 316
MnlI CCTC 3 cut(s) 77, 203, 294
Mox20I TGGCCA 1 cut(s) 267
Mph1103I ATGCAT 1 cut(s) 116
MscI TGGCCA 1 cut(s) 267
MseI TTAA 1 cut(s) 345
MslI CAYNNNNRTG 1 cut(s) 173
Msp20I TGGCCA 1 cut(s) 267
MspA1I CMGCKG 1 cut(s) 151
MspR9I CCNGG 1 cut(s) 14
MvaI CCWGG 1 cut(s) 14
NdeII GATC 2 cut(s) 73, 103
NlaIV GGNNCC 1 cut(s) 322
NsiI ATGCAT 1 cut(s) 116
PkrI GCNGC 2 cut(s) 150, 355
PleI GAGTC 1 cut(s) 315
PpsI GAGTC 1 cut(s) 315
Psp6I CCWGG 1 cut(s) 12
PspGI CCWGG 1 cut(s) 12
PspN4I GGNNCC 1 cut(s) 322
PstI CTGCAG 1 cut(s) 355
PsuI RGATCY 2 cut(s) 73, 103
PvuII CAGCTG 1 cut(s) 151
RseI CAYNNNNRTG 1 cut(s) 173
SaqAI TTAA 1 cut(s) 345
SatI GCNGC 2 cut(s) 149, 354
Sau3AI GATC 2 cut(s) 73, 103
SchI GAGTC 1 cut(s) 316
ScrFI CCNGG 1 cut(s) 14
SetI ASST 8 cut(s) 141, 153, 195, 201, 273, 292, 322, 362
SfaNI GCATC 1 cut(s) 244
SfcI CTRYAG 1 cut(s) 351
SmiMI CAYNNNNRTG 1 cut(s) 173
SmlI CTYRAG 2 cut(s) 194, 315
SmoI CTYRAG 2 cut(s) 194, 315
Sse9I AATT 2 cut(s) 259, 346
SspMI CTAG 3 cut(s) 83, 101, 287
StyD4I CCNGG 1 cut(s) 12
StyI CCWWGG 1 cut(s) 82
TaaI ACNGT 1 cut(s) 41
TasI AATT 2 cut(s) 259, 346
Tru1I TTAA 1 cut(s) 345
Tru9I TTAA 1 cut(s) 345
TseI GCWGC 2 cut(s) 148, 353
XapI RAATTY 1 cut(s) 259
XbaI TCTAGA 1 cut(s) 100
XmaJI CCTAGG 1 cut(s) 82
XspI CTAG 3 cut(s) 83, 101, 287
Zsp2I ATGCAT 1 cut(s) 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.