Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0031504.1

Orthogroup ID

OG0007483

Physical Location & Seq

Genomic Coordinates Forward (+)

1100 .. 1614

Gene Structure 515 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0031504.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

atgacggaagacaaagatcgacagccggaaacggccggcgacagtgcgaagcggaagctggaagaccccgccgccattagtattctgctcgcgaaacagaaagctcaggaaatcgccgcccgactcgtcaccaatgccgagtcgaagcgcccccgagtcgacgacgagtccttccaacccaaccccgtctacacccctcccgcttaccctggagatattaagaagtctaggttgagacttaggctccgaaggcttaagccagctccgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0001505 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006417 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010586 GO:0010604 GO:0010605 GO:0010608 GO:0010629 GO:0010984 GO:0010985 GO:0010988 GO:0010989 GO:0016070 GO:0016071 GO:0017091 GO:0017148 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031329 GO:0031331 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0034097 GO:0034248 GO:0034249 GO:0034641 GO:0034660 GO:0035925 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043487 GO:0043488 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045019 GO:0045428 GO:0045935 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050779 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051239 GO:0051241 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0061013 GO:0061014 GO:0061157 GO:0061158 GO:0065007 GO:0065008 GO:0070013 GO:0070887 GO:0071310 GO:0071345 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1903311 GO:1903313 GO:1903426 GO:1903427 GO:1904406 GO:2000112 GO:2000113 GO:2000377 GO:2000378

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1

Protein Analysis

89

Amino Acids

10.02

Weight (kDa)

9.91

Isoelectric Point (pI)

66.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007483)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g06980
malus_domestica	MD00G1050700.v1.1 MD10G1088600.v1.1
prunus_persica	Prupe.8G115800_v2.0.a1 Prupe.8G115800_v2.0.a1
pyrus_communis	pycom05g06770 pycom10g07150 pycom10g07160
rosa_chinensis	RchiOBHm_Chr4g0444281 RchiOBHm_Chr6g0259341
rosa_laevigata	RLG00000014538
rosa_multiflora	Rmu_sc0004593.1_g000005 Rmu_sc0025785.1_g000001 Rmu_sc0031504.1_g000001
rosa_roxburghii	Rroxscaffold_1G00009040 Rroxscaffold_6G00423380 Rroxscaffold_7G00206580
rosa_rugosa	Rorug02G0459600 Rorug05G0587700
rosa_samantha	Rh6AG103700 Rh6BG096900 Rh6CG093000 Rh6CG093100 Rh6DG086900
rosa_wichuraiana	Rw6G008950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	159, 189
AccII	CGCG	1 cut(s)	92
AciI	CCGC	5 cut(s)	52, 69, 72, 117, 201
AcoI	YGGCCR	1 cut(s)	33
AflII	CTTAAG	1 cut(s)	254
AhdI	GACNNNNNGTC	1 cut(s)	166
AjnI	CCWGG	1 cut(s)	208
AluBI	AGCT	3 cut(s)	58, 104, 263
AluI	AGCT	3 cut(s)	58, 104, 263
Alw26I	GTCTC	1 cut(s)	229
Ama87I	CYCGRG	1 cut(s)	153
AoxI	GGCC	1 cut(s)	33
AspLEI	GCGC	1 cut(s)	150
AsuHPI	GGTGA	1 cut(s)	121
AvaI	CYCGRG	1 cut(s)	153
BbsI	GAAGAC	2 cut(s)	15, 69
BceAI	ACGGC	1 cut(s)	48
BciT130I	CCWGG	1 cut(s)	210
BcoDI	GTCTC	1 cut(s)	229
BfaI	CTAG	1 cut(s)	228
BfoI	RGCGCY	1 cut(s)	151
BfrI	CTTAAG	1 cut(s)	254
BisI	GCNGC	2 cut(s)	72, 117
BlsI	GCNGC	2 cut(s)	73, 118
Bme1390I	CCNGG	1 cut(s)	210
BmeRI	GACNNNNNGTC	1 cut(s)	166
BmeT110I	CYCGRG	1 cut(s)	153
BmiI	GGNNCC	1 cut(s)	245
BmrFI	CCNGG	1 cut(s)	210
BpiI	GAAGAC	2 cut(s)	15, 69
BpmI	CTGGAG	1 cut(s)	231
Bpu10I	CCTNAGC	1 cut(s)	105
BsaJI	CCNNGG	1 cut(s)	208
BsaXI	ACNNNNNCTCC	2 cut(s)	228, 258
Bse118I	RCCGGY	1 cut(s)	35
BseBI	CCWGG	1 cut(s)	210
BseDI	CCNNGG	1 cut(s)	208
BseMII	CTCAG	1 cut(s)	119
BseX3I	CGGCCG	1 cut(s)	33
Bsh1236I	CGCG	1 cut(s)	92
Bsh1285I	CGRYCG	1 cut(s)	36
BshFI	GGCC	1 cut(s)	35
BsiEI	CGRYCG	1 cut(s)	36
BsiHKCI	CYCGRG	1 cut(s)	153
BsiSI	CCGG	2 cut(s)	26, 36
BsmAI	GTCTC	1 cut(s)	229
BsnI	GGCC	1 cut(s)	35
BsoBI	CYCGRG	1 cut(s)	153
Bsp143I	GATC	1 cut(s)	16
Bsp68I	TCGCGA	1 cut(s)	92
BspACI	CCGC	5 cut(s)	52, 69, 72, 117, 201
BspANI	GGCC	1 cut(s)	35
BspCNI	CTCAG	1 cut(s)	118
BspFNI	CGCG	1 cut(s)	92
BspLI	GGNNCC	1 cut(s)	245
BspTI	CTTAAG	1 cut(s)	254
BsrFI	RCCGGY	1 cut(s)	35
BssAI	RCCGGY	1 cut(s)	35
BssECI	CCNNGG	1 cut(s)	208
BssMI	GATC	1 cut(s)	16
Bst2UI	CCWGG	1 cut(s)	210
Bst4CI	ACNGT	1 cut(s)	44
BstAFI	CTTAAG	1 cut(s)	254
BstC8I	GCNNGC	3 cut(s)	37, 90, 261
BstDEI	CTNAG	2 cut(s)	105, 239
BstFNI	CGCG	1 cut(s)	92
BstH2I	RGCGCY	1 cut(s)	151
BstHHI	GCGC	1 cut(s)	150
BstKTI	GATC	1 cut(s)	19
BstMAI	GTCTC	1 cut(s)	229
BstMBI	GATC	1 cut(s)	16
BstMCI	CGRYCG	1 cut(s)	36
BstMWI	GCNNNNNNNGC	1 cut(s)	250
BstNI	CCWGG	1 cut(s)	210
BstSCI	CCNGG	1 cut(s)	208
BstUI	CGCG	1 cut(s)	92
BstV2I	GAAGAC	2 cut(s)	15, 69
BstZI	CGGCCG	1 cut(s)	33
BsuRI	GGCC	1 cut(s)	35
BtsIMutI	CAGTG	1 cut(s)	49
BtuMI	TCGCGA	1 cut(s)	92
Cac8I	GCNNGC	3 cut(s)	37, 90, 261
CfoI	GCGC	1 cut(s)	150
Cfr10I	RCCGGY	1 cut(s)	35
CviJI	RGCY	8 cut(s)	25, 35, 58, 104, 244, 253, 259, 263
CviKI_1	RGCY	8 cut(s)	25, 35, 58, 104, 244, 253, 259, 263
DdeI	CTNAG	2 cut(s)	105, 239
DpnI	GATC	1 cut(s)	18
DpnII	GATC	1 cut(s)	16
DriI	GACNNNNNGTC	1 cut(s)	166
EaeI	YGGCCR	1 cut(s)	33
EagI	CGGCCG	1 cut(s)	33
Eam1105I	GACNNNNNGTC	1 cut(s)	166
EclXI	CGGCCG	1 cut(s)	33
Eco52I	CGGCCG	1 cut(s)	33
Eco88I	CYCGRG	1 cut(s)	153
EcoRII	CCWGG	1 cut(s)	208
FauI	CCCGC	2 cut(s)	76, 208
FblI	GTMKAC	2 cut(s)	159, 189
Fnu4HI	GCNGC	2 cut(s)	72, 117
Fsp4HI	GCNGC	2 cut(s)	72, 117
FspBI	CTAG	1 cut(s)	228
GlaI	GCGC	1 cut(s)	149
GluI	GCNGC	2 cut(s)	72, 117
GsuI	CTGGAG	1 cut(s)	231
HaeII	RGCGCY	1 cut(s)	151
HaeIII	GGCC	1 cut(s)	35
HapII	CCGG	2 cut(s)	26, 36
HhaI	GCGC	1 cut(s)	150
Hin6I	GCGC	1 cut(s)	148
HinP1I	GCGC	1 cut(s)	148
HincII	GTYRAC	1 cut(s)	160
HindII	GTYRAC	1 cut(s)	160
HinfI	GANTC	4 cut(s)	123, 140, 156, 167
HpaII	CCGG	2 cut(s)	26, 36
HphI	GGTGA	1 cut(s)	121
Hpy166II	GTNNAC	2 cut(s)	160, 190
Hpy188I	TCNGA	1 cut(s)	248
Hpy188III	TCNNGA	2 cut(s)	91, 107
Hpy8I	GTNNAC	2 cut(s)	160, 190
Hpy99I	CGWCG	2 cut(s)	164, 167
HpyAV	CCTTC	2 cut(s)	181, 243
HpyCH4III	ACNGT	1 cut(s)	44
HpyF10VI	GCNNNNNNNGC	1 cut(s)	250
HpyF3I	CTNAG	2 cut(s)	105, 239
HspAI	GCGC	1 cut(s)	148
KroI	GCCGGC	1 cut(s)	35
KroNI	GCCGGC	1 cut(s)	37
Kzo9I	GATC	1 cut(s)	16
LmnI	GCTCC	2 cut(s)	249, 268
LpnPI	CCDG	6 cut(s)	39, 44, 49, 92, 195, 222
MaeI	CTAG	1 cut(s)	228
MaeIII	GTNAC	1 cut(s)	127
MalI	GATC	1 cut(s)	18
MboI	GATC	1 cut(s)	16
MboII	GAAGA	2 cut(s)	20, 74
MlyI	GAGTC	4 cut(s)	117, 149, 165, 176
MmeI	TCCRAC	1 cut(s)	199
MnlI	CCTC	1 cut(s)	207
MroNI	GCCGGC	1 cut(s)	35
MseI	TTAA	2 cut(s)	219, 255
MspCI	CTTAAG	1 cut(s)	254
MspI	CCGG	2 cut(s)	26, 36
MspR9I	CCNGG	1 cut(s)	210
MvaI	CCWGG	1 cut(s)	210
MvnI	CGCG	1 cut(s)	92
MwoI	GCNNNNNNNGC	1 cut(s)	250
NaeI	GCCGGC	1 cut(s)	37
NdeII	GATC	1 cut(s)	16
NgoMIV	GCCGGC	1 cut(s)	35
NlaIV	GGNNCC	1 cut(s)	245
NmeAIII	GCCGAG	1 cut(s)	163
NmuCI	GTSAC	1 cut(s)	127
NruI	TCGCGA	1 cut(s)	92
PdiI	GCCGGC	1 cut(s)	37
PkrI	GCNGC	2 cut(s)	73, 118
PleI	GAGTC	4 cut(s)	117, 148, 164, 175
PpsI	GAGTC	4 cut(s)	117, 148, 164, 175
Psp6I	CCWGG	1 cut(s)	208
PspGI	CCWGG	1 cut(s)	208
PspN4I	GGNNCC	1 cut(s)	245
RruI	TCGCGA	1 cut(s)	92
SalI	GTCGAC	1 cut(s)	158
SaqAI	TTAA	2 cut(s)	219, 255
SatI	GCNGC	2 cut(s)	72, 117
Sau3AI	GATC	1 cut(s)	16
SchI	GAGTC	4 cut(s)	117, 149, 165, 176
ScrFI	CCNGG	1 cut(s)	210
SetI	ASST	4 cut(s)	60, 106, 233, 265
SmlI	CTYRAG	1 cut(s)	254
SmoI	CTYRAG	1 cut(s)	254
SsiI	CCGC	5 cut(s)	52, 69, 72, 117, 201
SspMI	CTAG	1 cut(s)	228
StyD4I	CCNGG	1 cut(s)	208
TaaI	ACNGT	1 cut(s)	44
TaqI	TCGA	3 cut(s)	19, 143, 159
TauI	GCSGC	2 cut(s)	74, 119
Tru1I	TTAA	2 cut(s)	219, 255
Tru9I	TTAA	2 cut(s)	219, 255
TscAI	CASTG	1 cut(s)	49
TseFI	GTSAC	1 cut(s)	127
Tsp45I	GTSAC	1 cut(s)	127
TspGWI	ACGGA	2 cut(s)	20, 255
TspRI	CASTG	1 cut(s)	49
Vha464I	CTTAAG	1 cut(s)	254
XmiI	GTMKAC	2 cut(s)	159, 189
XspI	CTAG	1 cut(s)	228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.