Rroxscaffold_7G00206580

Far upstream element-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0007483
Physical Location & Seq
Reverse (-)
56370708 .. 56375026
4319 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00206580.1

Sequence Viewer

Length: 657 bp
ATGCCGAGTCCAAGCGCCCCGAGTCGACGACGAGTCCTTCCAACCAACCCAACCCCGTCTACACCCCTCCCGCTTACCCTGGTTGGTGTAATTATTGGAAAACAAGGAGAAACAATAAGACAACTACAATTACAGTCAGGGGCCAAAATCCAGATAACCAGGGATTCAGAAGCTGATCTTAATTCTCTAACGAGGGATGTGGAGTTGACGGGTACATCTGAACAGATTAGTAGGGCAGAACAACTTATCAATGATGTAATAGCTGAGGCGGATGCAGGGGGCTCTGCTCCATCTACAAATCAGGGATTTAACTCGGTGCAACCTGGAGGGGAACAGTTTGTCATGAAAGTTCCAAACAATAAGATTGTACCATTGCACCTTCCTCCTGGTGATATGTCAACTGAGAGATCAGTATACATAAATGGAGGGCAAGAGCAAATTGAGGCAGCCAAAGAATTGGTGAACGAAGTAATCAGTGGGAAGCGTTTATTGAATGCCTCTGGAACCAATAGCTATATGCAGCAGCCATCCTATCCCCCTTCTGGTAATTGGGCCCCGCCAGGACAACCTCCAATTCAGCAACAGCAGCCTCATTATGGGTATACACAACCTGGAGGTTATGGTACACCTCCGGCACCTCCCCTCGTACTATGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000375 GO:0001505 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006417 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010586 GO:0010604 GO:0010605 GO:0010608 GO:0010629 GO:0010984 GO:0010985 GO:0010988 GO:0010989 GO:0016070 GO:0016071 GO:0017091 GO:0017148 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031329 GO:0031331 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0034097 GO:0034248 GO:0034249 GO:0034641 GO:0034660 GO:0035925 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043487 GO:0043488 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045019 GO:0045428 GO:0045935 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050779 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051239 GO:0051241 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0061013 GO:0061014 GO:0061157 GO:0061158 GO:0065007 GO:0065008 GO:0070013 GO:0070887 GO:0071310 GO:0071345 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1903311 GO:1903313 GO:1903426 GO:1903427 GO:1904406 GO:2000112 GO:2000113 GO:2000377 GO:2000378
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KH_1

Protein Analysis

218

Amino Acids

23.31

Weight (kDa)

5.41

Isoelectric Point (pI)

66.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KH_1 PF00013 24 - 85 3e-15 KH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 634
AccI GTMKAC 4 cut(s) 25, 59, 414, 602
AciI CCGC 3 cut(s) 71, 269, 557
AfaI GTAC 4 cut(s) 214, 369, 625, 648
AfiI CCNNNNNNNGG 2 cut(s) 542, 596
AgsI TTSAA 1 cut(s) 493
AhdI GACNNNNNGTC 1 cut(s) 32
AjnI CCWGG 6 cut(s) 78, 158, 322, 385, 559, 610
AluBI AGCT 3 cut(s) 173, 263, 513
AluI AGCT 3 cut(s) 173, 263, 513
AlwNI CAGNNNCTG 1 cut(s) 173
Ama87I CYCGRG 1 cut(s) 19
AoxI GGCC 2 cut(s) 141, 552
ApaI GGGCCC 1 cut(s) 556
ApeKI GCWGC 4 cut(s) 446, 520, 523, 586
AspLEI GCGC 1 cut(s) 17
AspS9I GGNCC 3 cut(s) 141, 552, 553
AsuHPI GGTGA 2 cut(s) 401, 472
AvaI CYCGRG 1 cut(s) 19
BaeGI GKGCMC 1 cut(s) 556
BanI GGYRCC 1 cut(s) 634
BanII GRGCYC 2 cut(s) 284, 556
BbvCI CCTCAGC 1 cut(s) 264
BbvI GCAGC 4 cut(s) 458, 532, 535, 598
BccI CCATC 2 cut(s) 298, 535
BciT130I CCWGG 6 cut(s) 80, 160, 324, 387, 561, 612
BfoI RGCGCY 1 cut(s) 18
BisI GCNGC 4 cut(s) 447, 521, 524, 587
BlsI GCNGC 4 cut(s) 448, 522, 525, 588
Bme1390I CCNGG 6 cut(s) 80, 160, 324, 387, 561, 612
BmeRI GACNNNNNGTC 1 cut(s) 32
BmeT110I CYCGRG 1 cut(s) 19
BmgT120I GGNCC 3 cut(s) 141, 552, 553
BmiI GGNNCC 5 cut(s) 142, 505, 554, 555, 636
BmrFI CCNGG 6 cut(s) 80, 160, 324, 387, 561, 612
BmsI GCATC 1 cut(s) 262
BpmI CTGGAG 2 cut(s) 345, 633
Bpu10I CCTNAGC 1 cut(s) 264
BsaJI CCNNGG 2 cut(s) 78, 159
Bsc4I CCNNNNNNNGG 2 cut(s) 542, 596
Bse3DI GCAATG 1 cut(s) 371
BseBI CCWGG 6 cut(s) 80, 160, 324, 387, 561, 612
BseDI CCNNGG 2 cut(s) 78, 159
BseGI GGATG 3 cut(s) 202, 277, 527
BseLI CCNNNNNNNGG 2 cut(s) 542, 596
BseMI GCAATG 1 cut(s) 371
BseMII CTCAG 2 cut(s) 255, 393
BseSI GKGCMC 1 cut(s) 556
BseXI GCAGC 4 cut(s) 458, 532, 535, 598
BshFI GGCC 2 cut(s) 143, 554
BshNI GGYRCC 1 cut(s) 634
BsiHKCI CYCGRG 1 cut(s) 19
BsiSI CCGG 1 cut(s) 632
BslI CCNNNNNNNGG 2 cut(s) 542, 596
BsmI GAATGC 1 cut(s) 499
BsnI GGCC 2 cut(s) 143, 554
BsoBI CYCGRG 1 cut(s) 19
Bsp120I GGGCCC 1 cut(s) 552
Bsp1286I GDGCHC 2 cut(s) 284, 556
Bsp143I GATC 2 cut(s) 175, 407
BspACI CCGC 3 cut(s) 71, 269, 557
BspANI GGCC 2 cut(s) 143, 554
BspCNI CTCAG 2 cut(s) 256, 394
BspHI TCATGA 1 cut(s) 342
BspLI GGNNCC 5 cut(s) 142, 505, 554, 555, 636
BspT107I GGYRCC 1 cut(s) 634
BsrDI GCAATG 1 cut(s) 371
BssECI CCNNGG 2 cut(s) 78, 159
BssMI GATC 2 cut(s) 175, 407
BssNAI GTATAC 2 cut(s) 415, 603
Bst1107I GTATAC 2 cut(s) 415, 603
Bst2UI CCWGG 6 cut(s) 80, 160, 324, 387, 561, 612
Bst4CI ACNGT 2 cut(s) 135, 336
BstDEI CTNAG 2 cut(s) 264, 402
BstF5I GGATG 3 cut(s) 202, 277, 527
BstH2I RGCGCY 1 cut(s) 18
BstHHI GCGC 1 cut(s) 17
BstKTI GATC 2 cut(s) 178, 410
BstMBI GATC 2 cut(s) 175, 407
BstMWI GCNNNNNNNGC 1 cut(s) 586
BstNI CCWGG 6 cut(s) 80, 160, 324, 387, 561, 612
BstSCI CCNGG 6 cut(s) 78, 158, 322, 385, 559, 610
BstSLI GKGCMC 1 cut(s) 556
BstV1I GCAGC 4 cut(s) 458, 532, 535, 598
BstXI CCANNNNNNTGG 1 cut(s) 457
BstZ17I GTATAC 2 cut(s) 415, 603
BsuRI GGCC 2 cut(s) 143, 554
BtsCI GGATG 3 cut(s) 202, 277, 527
BtsIMutI CAGTG 1 cut(s) 481
CaiI CAGNNNCTG 1 cut(s) 173
CciI TCATGA 1 cut(s) 342
CfoI GCGC 1 cut(s) 17
Cfr13I GGNCC 3 cut(s) 141, 552, 553
Csp6I GTAC 4 cut(s) 213, 368, 624, 647
CviAII CATG 1 cut(s) 343
CviJI RGCY 9 cut(s) 143, 173, 263, 282, 449, 513, 526, 554, 589
CviKI_1 RGCY 9 cut(s) 143, 173, 263, 282, 449, 513, 526, 554, 589
CviQI GTAC 4 cut(s) 213, 368, 624, 647
DdeI CTNAG 2 cut(s) 264, 402
DpnI GATC 2 cut(s) 177, 409
DpnII GATC 2 cut(s) 175, 407
DriI GACNNNNNGTC 1 cut(s) 32
Eam1105I GACNNNNNGTC 1 cut(s) 32
EciI GGCGGA 1 cut(s) 284
Eco24I GRGCYC 2 cut(s) 284, 556
Eco88I CYCGRG 1 cut(s) 19
EcoO109I RGGNCCY 1 cut(s) 553
EcoRII CCWGG 6 cut(s) 78, 158, 322, 385, 559, 610
EcoT38I GRGCYC 2 cut(s) 284, 556
FaeI CATG 1 cut(s) 346
FalI AAGNNNNNCTT 2 cut(s) 162, 194
FatI CATG 1 cut(s) 342
FauI CCCGC 2 cut(s) 78, 564
FblI GTMKAC 4 cut(s) 25, 59, 414, 602
Fnu4HI GCNGC 4 cut(s) 447, 521, 524, 587
FokI GGATG 3 cut(s) 209, 284, 514
FriOI GRGCYC 2 cut(s) 284, 556
Fsp4HI GCNGC 4 cut(s) 447, 521, 524, 587
GlaI GCGC 1 cut(s) 16
GluI GCNGC 4 cut(s) 447, 521, 524, 587
GsuI CTGGAG 2 cut(s) 345, 633
HaeII RGCGCY 1 cut(s) 18
HaeIII GGCC 2 cut(s) 143, 554
HapII CCGG 1 cut(s) 632
HhaI GCGC 1 cut(s) 17
Hin1II CATG 1 cut(s) 346
Hin6I GCGC 1 cut(s) 15
HinP1I GCGC 1 cut(s) 15
HincII GTYRAC 3 cut(s) 26, 207, 399
HindII GTYRAC 3 cut(s) 26, 207, 399
HinfI GANTC 4 cut(s) 7, 22, 33, 164
HpaII CCGG 1 cut(s) 632
HphI GGTGA 2 cut(s) 401, 472
Hpy166II GTNNAC 8 cut(s) 26, 60, 207, 399, 415, 463, 603, 626
Hpy188I TCNGA 2 cut(s) 169, 220
Hpy188III TCNNGA 3 cut(s) 151, 343, 501
Hpy8I GTNNAC 8 cut(s) 26, 60, 207, 399, 415, 463, 603, 626
Hpy99I CGWCG 2 cut(s) 30, 33
HpyAV CCTTC 3 cut(s) 47, 389, 549
HpyCH4III ACNGT 2 cut(s) 135, 336
HpyCH4V TGCA 4 cut(s) 275, 319, 376, 520
HpyF10VI GCNNNNNNNGC 1 cut(s) 586
HpyF3I CTNAG 2 cut(s) 264, 402
Hsp92II CATG 1 cut(s) 346
HspAI GCGC 1 cut(s) 15
Kzo9I GATC 2 cut(s) 175, 407
LmnI GCTCC 1 cut(s) 292
Lsp1109I GCAGC 4 cut(s) 458, 532, 535, 598
LweI GCATC 1 cut(s) 262
MalI GATC 2 cut(s) 177, 409
MboI GATC 2 cut(s) 175, 407
MhlI GDGCHC 2 cut(s) 284, 556
MluCI AATT 7 cut(s) 90, 128, 181, 438, 455, 547, 573
MlyI GAGTC 3 cut(s) 16, 31, 42
MmeI TCCRAC 1 cut(s) 65
MseI TTAA 2 cut(s) 180, 309
MspI CCGG 1 cut(s) 632
MspR9I CCNGG 6 cut(s) 80, 160, 324, 387, 561, 612
Mva1269I GAATGC 1 cut(s) 499
MvaI CCWGG 6 cut(s) 80, 160, 324, 387, 561, 612
MwoI GCNNNNNNNGC 1 cut(s) 586
NdeII GATC 2 cut(s) 175, 407
NlaIII CATG 1 cut(s) 346
NlaIV GGNNCC 5 cut(s) 142, 505, 554, 555, 636
NmeAIII GCCGAG 1 cut(s) 30
PagI TCATGA 1 cut(s) 342
PctI GAATGC 1 cut(s) 499
PfeI GAWTC 1 cut(s) 164
PkrI GCNGC 4 cut(s) 448, 522, 525, 588
PleI GAGTC 3 cut(s) 15, 30, 41
PpsI GAGTC 3 cut(s) 15, 30, 41
Psp6I CCWGG 6 cut(s) 78, 158, 322, 385, 559, 610
PspGI CCWGG 6 cut(s) 78, 158, 322, 385, 559, 610
PspN4I GGNNCC 5 cut(s) 142, 505, 554, 555, 636
PspOMI GGGCCC 1 cut(s) 552
PspPI GGNCC 3 cut(s) 141, 552, 553
PstNI CAGNNNCTG 1 cut(s) 173
RsaI GTAC 4 cut(s) 214, 369, 625, 648
RsaNI GTAC 4 cut(s) 213, 368, 624, 647
SalI GTCGAC 1 cut(s) 24
SaqAI TTAA 2 cut(s) 180, 309
SatI GCNGC 4 cut(s) 447, 521, 524, 587
Sau3AI GATC 2 cut(s) 175, 407
Sau96I GGNCC 3 cut(s) 141, 552, 553
SchI GAGTC 3 cut(s) 16, 31, 42
ScrFI CCNGG 6 cut(s) 80, 160, 324, 387, 561, 612
SduI GDGCHC 2 cut(s) 284, 556
SfaNI GCATC 1 cut(s) 262
Sse9I AATT 7 cut(s) 90, 128, 181, 438, 455, 547, 573
SsiI CCGC 3 cut(s) 71, 269, 557
StyD4I CCNGG 6 cut(s) 78, 158, 322, 385, 559, 610
TaaI ACNGT 2 cut(s) 135, 336
TaqI TCGA 1 cut(s) 25
TasI AATT 7 cut(s) 90, 128, 181, 438, 455, 547, 573
TfiI GAWTC 1 cut(s) 164
Tru1I TTAA 2 cut(s) 180, 309
Tru9I TTAA 2 cut(s) 180, 309
TscAI CASTG 1 cut(s) 481
TseI GCWGC 4 cut(s) 446, 520, 523, 586
TspDTI ATGAA 1 cut(s) 359
TspRI CASTG 1 cut(s) 481
XmiI GTMKAC 4 cut(s) 25, 59, 414, 602
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.