Rroxscaffold_1G00009040

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0007483
Physical Location & Seq
Forward (+)
11346128 .. 11351086
4959 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00009040.1

Sequence Viewer

Length: 687 bp
ATGCCTCACGGCCACACGAGCTCCACGTCAACTCAAGTTGTGGTTGGTTCCTTCTCAACTCAAACTATGCCAGCATCATCCTATCAATCTCAACAAGAATTTTGGCCGGCTGATAGTTGTCCTCCAGCCGAGTTCAATACCAAGAGTGTAACTCAAGGTTCTCGTATAGCCTTGAAGTCCTTTAATTCGGCGAGGGCTGCTTGTGAGCACAAGAATGGGAACCCGGATGCGGGCTACACGAAACGGTGGAGACCTTATGGTAGGGCAATGATGATGGCCCGACTAGGGCGATGGTGGTGCGACGGGACCGGCGATGTCACGGCGGAGGATATGGTGCAAGGTTTATGGCACGATTTATGGGCTTGGCTAGTGGGTTGTAGTGATTCCCCCGATGATTGGGTTGCGACGTATCCTGGGGATGTGGATTCATTGCAACACAAGGTCCACTTTCAAATACCTATGAGGATTTCGGGAGATGGTTATCCAAAGACGGTGCCCCGTTATTATTGTGCTTTCTATATTGGATACGAGTATTGGGAGAACCGGAACATGTTGCACAATCCCTCTACCAATGAAGAGAAATCCTTAGATGAATTGGAAGACCACACGGAGATGAGCATAATTGCTTTCTATATTGGATACGGGTATGCCAATGAGAGTTGGTTCGATTGGCAAGAGCGGACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

228

Amino Acids

26.1

Weight (kDa)

5.18

Isoelectric Point (pI)

48.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 493
AccBSI CCGCTC 1 cut(s) 679
AciI CCGC 3 cut(s) 230, 323, 679
AcoI YGGCCR 2 cut(s) 10, 104
AcsI RAATTY 1 cut(s) 98
AfiI CCNNNNNNNGG 4 cut(s) 229, 230, 285, 396
AflIII ACRYGT 1 cut(s) 549
AgsI TTSAA 3 cut(s) 136, 175, 452
AjiI CACGTC 1 cut(s) 27
AjnI CCWGG 1 cut(s) 412
AluBI AGCT 1 cut(s) 21
AluI AGCT 1 cut(s) 21
Alw21I GWGCWC 2 cut(s) 23, 210
Alw26I GTCTC 1 cut(s) 244
AoxI GGCC 3 cut(s) 10, 104, 276
ApeKI GCWGC 1 cut(s) 197
ApoI RAATTY 1 cut(s) 98
AspS9I GGNCC 3 cut(s) 277, 306, 442
AsuC2I CCSGG 1 cut(s) 224
AvaII GGWCC 2 cut(s) 306, 442
BaeGI GKGCMC 1 cut(s) 498
BanI GGYRCC 1 cut(s) 493
BanII GRGCYC 1 cut(s) 23
BauI CACGAG 1 cut(s) 16
BbsI GAAGAC 1 cut(s) 606
Bbv12I GWGCWC 2 cut(s) 23, 210
BbvI GCAGC 1 cut(s) 184
BccI CCATC 3 cut(s) 268, 285, 470
BceAI ACGGC 2 cut(s) 25, 336
BcgI CGANNNNNNTGC 2 cut(s) 279, 313
BciT130I CCWGG 1 cut(s) 414
BciVI GTATCC 3 cut(s) 420, 518, 632
BcnI CCSGG 1 cut(s) 224
BcoDI GTCTC 1 cut(s) 244
BfaI CTAG 2 cut(s) 284, 368
BfuI GTATCC 3 cut(s) 420, 518, 632
BisI GCNGC 1 cut(s) 198
BlsI GCNGC 1 cut(s) 199
Bme1390I CCNGG 2 cut(s) 224, 414
Bme18I GGWCC 2 cut(s) 306, 442
BmgBI CACGTC 1 cut(s) 27
BmgT120I GGNCC 3 cut(s) 277, 306, 442
BmiI GGNNCC 4 cut(s) 49, 221, 307, 495
BmrFI CCNGG 2 cut(s) 224, 414
BmsI GCATC 2 cut(s) 83, 217
BpiI GAAGAC 1 cut(s) 606
BplI GAGNNNNNCTC 2 cut(s) 136, 168
BpmI CTGGAG 1 cut(s) 108
BpuEI CTTGAG 2 cut(s) 18, 138
BpuMI CCSGG 1 cut(s) 224
BsaBI GATNNNNATC 1 cut(s) 480
BsaI GGTCTC 1 cut(s) 244
BsaJI CCNNGG 1 cut(s) 413
BsaWI WCCGGW 1 cut(s) 543
BsaXI ACNNNNNCTCC 2 cut(s) 5, 35
Bsc4I CCNNNNNNNGG 4 cut(s) 229, 230, 285, 396
Bse118I RCCGGY 2 cut(s) 106, 308
Bse3DI GCAATG 2 cut(s) 273, 428
Bse8I GATNNNNATC 1 cut(s) 480
BseBI CCWGG 1 cut(s) 414
BseDI CCNNGG 1 cut(s) 413
BseGI GGATG 3 cut(s) 77, 232, 424
BseJI GATNNNNATC 1 cut(s) 480
BseLI CCNNNNNNNGG 4 cut(s) 229, 230, 285, 396
BseMI GCAATG 2 cut(s) 273, 428
BseSI GKGCMC 1 cut(s) 498
BseXI GCAGC 1 cut(s) 184
BshFI GGCC 3 cut(s) 12, 106, 278
BshNI GGYRCC 1 cut(s) 493
BsiHKAI GWGCWC 2 cut(s) 23, 210
BsiSI CCGG 4 cut(s) 107, 224, 309, 544
BslFI GGGAC 1 cut(s) 319
BslI CCNNNNNNNGG 4 cut(s) 229, 230, 285, 396
BsmAI GTCTC 1 cut(s) 244
BsmFI GGGAC 1 cut(s) 319
BsnI GGCC 3 cut(s) 12, 106, 278
Bso31I GGTCTC 1 cut(s) 244
Bsp1286I GDGCHC 3 cut(s) 23, 210, 498
BspACI CCGC 3 cut(s) 230, 323, 679
BspANI GGCC 3 cut(s) 12, 106, 278
BspLI GGNNCC 4 cut(s) 49, 221, 307, 495
BspT107I GGYRCC 1 cut(s) 493
BspTNI GGTCTC 1 cut(s) 244
BsrBI CCGCTC 1 cut(s) 679
BsrDI GCAATG 2 cut(s) 273, 428
BsrFI RCCGGY 2 cut(s) 106, 308
BssAI RCCGGY 2 cut(s) 106, 308
BssECI CCNNGG 1 cut(s) 413
BssSI CACGAG 1 cut(s) 16
Bst2BI CACGAG 1 cut(s) 16
Bst2UI CCWGG 1 cut(s) 414
Bst4CI ACNGT 2 cut(s) 246, 493
Bst6I CTCTTC 1 cut(s) 570
BstC8I GCNNGC 3 cut(s) 72, 108, 232
BstDEI CTNAG 1 cut(s) 586
BstF5I GGATG 3 cut(s) 77, 232, 424
BstMAI GTCTC 1 cut(s) 244
BstMWI GCNNNNNNNGC 2 cut(s) 18, 197
BstNI CCWGG 1 cut(s) 414
BstNSI RCATGY 1 cut(s) 553
BstSCI CCNGG 2 cut(s) 222, 412
BstSLI GKGCMC 1 cut(s) 498
BstV1I GCAGC 1 cut(s) 184
BstV2I GAAGAC 1 cut(s) 606
BsuI GTATCC 3 cut(s) 420, 518, 632
BsuRI GGCC 3 cut(s) 12, 106, 278
BtgZI GCGATG 2 cut(s) 304, 327
BtrI CACGTC 1 cut(s) 27
BtsCI GGATG 3 cut(s) 77, 232, 424
Cac8I GCNNGC 3 cut(s) 72, 108, 232
Cfr10I RCCGGY 2 cut(s) 106, 308
Cfr13I GGNCC 3 cut(s) 277, 306, 442
CviAII CATG 1 cut(s) 550
DdeI CTNAG 1 cut(s) 586
EaeI YGGCCR 2 cut(s) 10, 104
Eam1104I CTCTTC 1 cut(s) 570
EarI CTCTTC 1 cut(s) 570
EciI GGCGGA 1 cut(s) 338
Ecl136II GAGCTC 1 cut(s) 21
Eco24I GRGCYC 1 cut(s) 23
Eco31I GGTCTC 1 cut(s) 244
Eco47I GGWCC 2 cut(s) 306, 442
Eco53kI GAGCTC 1 cut(s) 21
EcoICRI GAGCTC 1 cut(s) 21
EcoRII CCWGG 1 cut(s) 412
EcoT38I GRGCYC 1 cut(s) 23
FaeI CATG 1 cut(s) 553
FalI AAGNNNNNCTT 2 cut(s) 431, 463
FaqI GGGAC 1 cut(s) 319
FatI CATG 1 cut(s) 549
FauI CCCGC 1 cut(s) 223
Fnu4HI GCNGC 1 cut(s) 198
FokI GGATG 3 cut(s) 64, 239, 431
FriOI GRGCYC 1 cut(s) 23
Fsp4HI GCNGC 1 cut(s) 198
FspBI CTAG 2 cut(s) 284, 368
GluI GCNGC 1 cut(s) 198
GsuI CTGGAG 1 cut(s) 108
HaeIII GGCC 3 cut(s) 12, 106, 278
HapII CCGG 4 cut(s) 107, 224, 309, 544
Hin1II CATG 1 cut(s) 553
HincII GTYRAC 1 cut(s) 30
HindII GTYRAC 1 cut(s) 30
HinfI GANTC 2 cut(s) 383, 425
HpaII CCGG 4 cut(s) 107, 224, 309, 544
Hpy166II GTNNAC 2 cut(s) 30, 445
Hpy188III TCNNGA 1 cut(s) 471
Hpy8I GTNNAC 2 cut(s) 30, 445
Hpy99I CGWCG 2 cut(s) 305, 409
HpyAV CCTTC 1 cut(s) 61
HpyCH4III ACNGT 2 cut(s) 246, 493
HpyCH4IV ACGT 2 cut(s) 26, 407
HpyCH4V TGCA 3 cut(s) 337, 433, 556
HpyF10VI GCNNNNNNNGC 2 cut(s) 18, 197
HpyF3I CTNAG 1 cut(s) 586
HpySE526I ACGT 2 cut(s) 26, 407
Hsp92II CATG 1 cut(s) 553
KroI GCCGGC 1 cut(s) 106
KroNI GCCGGC 1 cut(s) 108
LmnI GCTCC 1 cut(s) 26
LpnPI CCDG 8 cut(s) 84, 120, 138, 237, 322, 399, 426, 557
Lsp1109I GCAGC 1 cut(s) 184
LweI GCATC 2 cut(s) 83, 217
MaeI CTAG 2 cut(s) 284, 368
MaeII ACGT 2 cut(s) 26, 407
MaeIII GTNAC 2 cut(s) 148, 316
MbiI CCGCTC 1 cut(s) 679
MboII GAAGA 2 cut(s) 587, 611
MhlI GDGCHC 3 cut(s) 23, 210, 498
MluCI AATT 4 cut(s) 98, 184, 593, 621
MnlI CCTC 6 cut(s) 15, 132, 186, 319, 456, 574
MroNI GCCGGC 1 cut(s) 106
MseI TTAA 2 cut(s) 183, 685
MslI CAYNNNNRTG 2 cut(s) 213, 611
MspI CCGG 4 cut(s) 107, 224, 309, 544
MspR9I CCNGG 2 cut(s) 224, 414
MvaI CCWGG 1 cut(s) 414
MwoI GCNNNNNNNGC 2 cut(s) 18, 197
NaeI GCCGGC 1 cut(s) 108
NciI CCSGG 1 cut(s) 224
NgoMIV GCCGGC 1 cut(s) 106
NlaIII CATG 1 cut(s) 553
NlaIV GGNNCC 4 cut(s) 49, 221, 307, 495
NmeAIII GCCGAG 1 cut(s) 154
NmuCI GTSAC 1 cut(s) 316
NspI RCATGY 1 cut(s) 553
PciI ACATGT 1 cut(s) 549
PcsI WCGNNNNNNNCGW 2 cut(s) 23, 309
PdiI GCCGGC 1 cut(s) 108
PfeI GAWTC 2 cut(s) 383, 425
PkrI GCNGC 1 cut(s) 199
PscI ACATGT 1 cut(s) 549
Psp124BI GAGCTC 1 cut(s) 23
Psp6I CCWGG 1 cut(s) 412
PspGI CCWGG 1 cut(s) 412
PspN4I GGNNCC 4 cut(s) 49, 221, 307, 495
PspPI GGNCC 3 cut(s) 277, 306, 442
RseI CAYNNNNRTG 2 cut(s) 213, 611
SacI GAGCTC 1 cut(s) 23
SaqAI TTAA 2 cut(s) 183, 685
SatI GCNGC 1 cut(s) 198
Sau96I GGNCC 3 cut(s) 277, 306, 442
ScrFI CCNGG 2 cut(s) 224, 414
SduI GDGCHC 3 cut(s) 23, 210, 498
SetI ASST 8 cut(s) 23, 29, 160, 256, 343, 410, 444, 460
SfaNI GCATC 2 cut(s) 83, 217
SinI GGWCC 2 cut(s) 306, 442
SmiMI CAYNNNNRTG 2 cut(s) 213, 611
SmlI CTYRAG 2 cut(s) 33, 153
SmoI CTYRAG 2 cut(s) 33, 153
Sse9I AATT 4 cut(s) 98, 184, 593, 621
SsiI CCGC 3 cut(s) 230, 323, 679
SspMI CTAG 2 cut(s) 284, 368
SstI GAGCTC 1 cut(s) 23
StyD4I CCNGG 2 cut(s) 222, 412
TaaI ACNGT 2 cut(s) 246, 493
TaiI ACGT 2 cut(s) 29, 410
TaqI TCGA 1 cut(s) 666
TasI AATT 4 cut(s) 98, 184, 593, 621
TfiI GAWTC 2 cut(s) 383, 425
Tru1I TTAA 2 cut(s) 183, 685
Tru9I TTAA 2 cut(s) 183, 685
TseFI GTSAC 1 cut(s) 316
TseI GCWGC 1 cut(s) 197
Tsp45I GTSAC 1 cut(s) 316
TspDTI ATGAA 3 cut(s) 417, 588, 606
TspGWI ACGGA 1 cut(s) 623
VpaK11BI GGWCC 2 cut(s) 306, 442
XapI RAATTY 1 cut(s) 98
XceI RCATGY 1 cut(s) 553
XspI CTAG 2 cut(s) 284, 368
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.