Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004593.1

Orthogroup ID

OG0007483

Physical Location & Seq

Genomic Coordinates Forward (+)

33049 .. 36287

Gene Structure 3239 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004593.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

atggttcatcctcctgtcgaaaattttgttcacgcctcaccatatttgccaactggtttttctcaacatctgggtggctttaatcctgctagtttagctatgctttttaattgctctactcctgctagcacaaacacatataatatgcctacacactacagtgcatataatatgtctcatgttagcacaagtcaagtaggatatgcttcaccaccaaccactatgtcaaccaactttggatttgtgaaacctcatgtcgtacctgctacaaatgcacatcagtcaacatttccaaccagtcttgcggtccacaatcttgagtaccctcaatatcctgctcataatttcaacggatcatttataatttccccatctgtatatgttactcaaaatggaggtctacatagtaactttgctaccaacaatggaagcagtttgtctcagggatttaactcaatgcaacctggacatgaacagtttgtaatgaaagttccaaacaatatggttgctttgataattggcaagtggtttgagactatcaagagtatgcaaaccaagtcaggatctcgtattcggattgtaccattgcaccttcctcctggtgataagtcaactgagagatcagtatatataaatggagggaaagagcaaattgaggcagccaaagaattgattaacgaagtaatcagtggaaagcgtttattaaatgcatctggaaccaatagctatatgcaacagcatcctattccaatgataaagttactaaagctggatataatagtaactctcagtgtgtttactttcctggtgatatctgtcaaatatgctcacaatttggtcactttgctaagacttgtcctcaaagatctgcccctaggcaagttattgcttctggatcttatatgcagtgtcatttttgttccaagacaggtcataatgcagctgaatgccttggttcaacccttgagctcaccagtgtttgatactttctgctcaaaatcctggcttgctgtggaatttgggtctgtcttaaaactccaaggactgatgtactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0001505 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006417 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010586 GO:0010604 GO:0010605 GO:0010608 GO:0010629 GO:0010984 GO:0010985 GO:0010988 GO:0010989 GO:0016070 GO:0016071 GO:0017091 GO:0017148 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031329 GO:0031331 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0034097 GO:0034248 GO:0034249 GO:0034641 GO:0034660 GO:0035925 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043487 GO:0043488 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045019 GO:0045428 GO:0045935 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050779 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051239 GO:0051241 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0061013 GO:0061014 GO:0061157 GO:0061158 GO:0065007 GO:0065008 GO:0070013 GO:0070887 GO:0071310 GO:0071345 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1903311 GO:1903313 GO:1903426 GO:1903427 GO:1904406 GO:2000112 GO:2000113 GO:2000377 GO:2000378

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1

Protein Analysis

351

Amino Acids

38.6

Weight (kDa)

9.24

Isoelectric Point (pI)

36.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007483)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g06980
malus_domestica	MD00G1050700.v1.1 MD10G1088600.v1.1
prunus_persica	Prupe.8G115800_v2.0.a1 Prupe.8G115800_v2.0.a1
pyrus_communis	pycom05g06770 pycom10g07150 pycom10g07160
rosa_chinensis	RchiOBHm_Chr4g0444281 RchiOBHm_Chr6g0259341
rosa_laevigata	RLG00000014538
rosa_multiflora	Rmu_sc0004593.1_g000005 Rmu_sc0025785.1_g000001 Rmu_sc0031504.1_g000001
rosa_roxburghii	Rroxscaffold_1G00009040 Rroxscaffold_6G00423380 Rroxscaffold_7G00206580
rosa_rugosa	Rorug02G0459600 Rorug05G0587700
rosa_samantha	Rh6AG103700 Rh6BG096900 Rh6CG093000 Rh6CG093100 Rh6DG086900
rosa_wichuraiana	Rw6G008950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	362
Acc36I	ACCTGC	1 cut(s)	271
AccI	GTMKAC	1 cut(s)	400
AciI	CCGC	1 cut(s)	305
AclWI	GGATC	3 cut(s)	361, 571, 903
AcsI	RAATTY	2 cut(s)	22, 1016
AfaI	GTAC	4 cut(s)	261, 323, 582, 1052
AgsI	TTSAA	2 cut(s)	349, 959
AjnI	CCWGG	4 cut(s)	463, 598, 804, 1001
AjuI	GAANNNNNNNTTGG	2 cut(s)	43, 75
AleI	CACNNNNGTG	1 cut(s)	159
AluBI	AGCT	5 cut(s)	98, 726, 769, 943, 969
AluI	AGCT	5 cut(s)	98, 726, 769, 943, 969
Alw21I	GWGCWC	1 cut(s)	971
Alw26I	GTCTC	3 cut(s)	180, 444, 527
AlwI	GGATC	3 cut(s)	361, 571, 903
ApeKI	GCWGC	2 cut(s)	659, 940
ApoI	RAATTY	2 cut(s)	22, 1016
ArsI	GACNNNNNNTTYG	2 cut(s)	382, 414
AspA2I	CCTAGG	1 cut(s)	874
AspS9I	GGNCC	1 cut(s)	307
AsuHPI	GGTGA	5 cut(s)	30, 201, 614, 820, 963
AsuNHI	GCTAGC	1 cut(s)	125
AvaII	GGWCC	1 cut(s)	307
AvrII	CCTAGG	1 cut(s)	874
BanII	GRGCYC	1 cut(s)	971
Bbv12I	GWGCWC	1 cut(s)	971
BbvI	GCAGC	2 cut(s)	671, 952
BccI	CCATC	1 cut(s)	379
BciT130I	CCWGG	4 cut(s)	465, 600, 806, 1003
BcoDI	GTCTC	3 cut(s)	180, 444, 527
BfaI	CTAG	3 cut(s)	90, 126, 875
BfmI	CTRYAG	1 cut(s)	157
BfuAI	ACCTGC	1 cut(s)	271
BglII	AGATCT	1 cut(s)	865
BisI	GCNGC	2 cut(s)	660, 941
BlnI	CCTAGG	1 cut(s)	874
BlsI	GCNGC	2 cut(s)	661, 942
Bme1390I	CCNGG	4 cut(s)	465, 600, 806, 1003
Bme18I	GGWCC	1 cut(s)	307
BmgT120I	GGNCC	1 cut(s)	307
BmiI	GGNNCC	1 cut(s)	718
BmrFI	CCNGG	4 cut(s)	465, 600, 806, 1003
BmsI	GCATC	2 cut(s)	719, 748
BmtI	GCTAGC	1 cut(s)	129
BpuEI	CTTGAG	2 cut(s)	338, 985
BsaJI	CCNNGG	3 cut(s)	874, 951, 1039
Bse1I	ACTGG	3 cut(s)	58, 297, 974
Bse3DI	GCAATG	1 cut(s)	584
BseBI	CCWGG	4 cut(s)	465, 600, 806, 1003
BseDI	CCNNGG	3 cut(s)	874, 951, 1039
BseGI	GGATG	2 cut(s)	7, 739
BseMI	GCAATG	1 cut(s)	584
BseMII	CTCAG	3 cut(s)	455, 606, 802
BseNI	ACTGG	3 cut(s)	58, 297, 974
BseXI	GCAGC	2 cut(s)	671, 952
BsiHKAI	GWGCWC	1 cut(s)	971
BsmAI	GTCTC	3 cut(s)	180, 444, 527
BsmI	GAATGC	1 cut(s)	952
Bsp1286I	GDGCHC	1 cut(s)	971
Bsp143I	GATC	5 cut(s)	353, 563, 620, 865, 895
BspACI	CCGC	1 cut(s)	305
BspCNI	CTCAG	3 cut(s)	454, 607, 801
BspLI	GGNNCC	1 cut(s)	718
BspMI	ACCTGC	1 cut(s)	271
BspOI	GCTAGC	1 cut(s)	129
BspPI	GGATC	3 cut(s)	361, 571, 903
BsrDI	GCAATG	1 cut(s)	584
BsrI	ACTGG	3 cut(s)	58, 297, 974
BssECI	CCNNGG	3 cut(s)	874, 951, 1039
BssMI	GATC	5 cut(s)	353, 563, 620, 865, 895
BssT1I	CCWWGG	3 cut(s)	874, 951, 1039
Bst2UI	CCWGG	4 cut(s)	465, 600, 806, 1003
Bst4CI	ACNGT	2 cut(s)	161, 477
BstC8I	GCNNGC	2 cut(s)	127, 1008
BstDEI	CTNAG	4 cut(s)	441, 615, 788, 848
BstF5I	GGATG	2 cut(s)	7, 739
BstKTI	GATC	5 cut(s)	356, 566, 623, 868, 898
BstMAI	GTCTC	3 cut(s)	180, 444, 527
BstMBI	GATC	5 cut(s)	353, 563, 620, 865, 895
BstMWI	GCNNNNNNNGC	2 cut(s)	95, 272
BstNI	CCWGG	4 cut(s)	465, 600, 806, 1003
BstSCI	CCNGG	4 cut(s)	463, 598, 804, 1001
BstSFI	CTRYAG	1 cut(s)	157
BstV1I	GCAGC	2 cut(s)	671, 952
BstX2I	RGATCY	3 cut(s)	563, 865, 895
BstYI	RGATCY	3 cut(s)	563, 865, 895
BtsCI	GGATG	2 cut(s)	7, 739
BtsI	GCAGTG	1 cut(s)	913
BtsIMutI	CAGTG	5 cut(s)	166, 694, 796, 913, 981
BveI	ACCTGC	1 cut(s)	271
Cac8I	GCNNGC	2 cut(s)	127, 1008
Cfr13I	GGNCC	1 cut(s)	307
Csp6I	GTAC	4 cut(s)	260, 322, 581, 1051
CviAII	CATG	3 cut(s)	179, 254, 470
CviJI	RGCY	8 cut(s)	78, 98, 662, 726, 769, 943, 969, 1006
CviKI_1	RGCY	8 cut(s)	78, 98, 662, 726, 769, 943, 969, 1006
CviQI	GTAC	4 cut(s)	260, 322, 581, 1051
DdeI	CTNAG	4 cut(s)	441, 615, 788, 848
DpnI	GATC	5 cut(s)	355, 565, 622, 867, 897
DpnII	GATC	5 cut(s)	353, 563, 620, 865, 895
Ecl136II	GAGCTC	1 cut(s)	969
Eco130I	CCWWGG	3 cut(s)	874, 951, 1039
Eco24I	GRGCYC	1 cut(s)	971
Eco32I	GATATC	1 cut(s)	813
Eco47I	GGWCC	1 cut(s)	307
Eco53kI	GAGCTC	1 cut(s)	969
EcoICRI	GAGCTC	1 cut(s)	969
EcoRII	CCWGG	4 cut(s)	463, 598, 804, 1001
EcoRV	GATATC	1 cut(s)	813
EcoT14I	CCWWGG	3 cut(s)	874, 951, 1039
EcoT22I	ATGCAT	1 cut(s)	712
EcoT38I	GRGCYC	1 cut(s)	971
ErhI	CCWWGG	3 cut(s)	874, 951, 1039
FaeI	CATG	3 cut(s)	182, 257, 473
FatI	CATG	3 cut(s)	178, 253, 469
FblI	GTMKAC	1 cut(s)	400
Fnu4HI	GCNGC	2 cut(s)	660, 941
FokI	GGATG	1 cut(s)	726
FriOI	GRGCYC	1 cut(s)	971
Fsp4HI	GCNGC	2 cut(s)	660, 941
FspBI	CTAG	3 cut(s)	90, 126, 875
GluI	GCNGC	2 cut(s)	660, 941
Hin1II	CATG	3 cut(s)	182, 257, 473
HincII	GTYRAC	3 cut(s)	228, 285, 612
HindII	GTYRAC	3 cut(s)	228, 285, 612
HphI	GGTGA	5 cut(s)	30, 201, 614, 820, 963
Hpy166II	GTNNAC	7 cut(s)	31, 228, 285, 310, 401, 612, 798
Hpy188I	TCNGA	1 cut(s)	576
Hpy188III	TCNNGA	5 cut(s)	317, 541, 561, 714, 893
Hpy8I	GTNNAC	7 cut(s)	31, 228, 285, 310, 401, 612, 798
HpyAV	CCTTC	1 cut(s)	602
HpyCH4III	ACNGT	2 cut(s)	161, 477
HpyCH4V	TGCA	9 cut(s)	164, 275, 460, 550, 589, 710, 733, 906, 940
HpyF10VI	GCNNNNNNNGC	2 cut(s)	95, 272
HpyF3I	CTNAG	4 cut(s)	441, 615, 788, 848
Hsp92II	CATG	3 cut(s)	182, 257, 473
Kzo9I	GATC	5 cut(s)	353, 563, 620, 865, 895
Lsp1109I	GCAGC	2 cut(s)	671, 952
LweI	GCATC	2 cut(s)	719, 748
MaeI	CTAG	3 cut(s)	90, 126, 875
MaeIII	GTNAC	5 cut(s)	382, 407, 759, 781, 838
MalI	GATC	5 cut(s)	355, 565, 622, 867, 897
MboI	GATC	5 cut(s)	353, 563, 620, 865, 895
MflI	RGATCY	3 cut(s)	563, 865, 895
MhlI	GDGCHC	1 cut(s)	971
MluCI	AATT	9 cut(s)	22, 109, 343, 363, 516, 651, 668, 832, 1016
MmeI	TCCRAC	1 cut(s)	317
MnlI	CCTC	9 cut(s)	21, 46, 261, 336, 389, 606, 632, 649, 869
Mph1103I	ATGCAT	1 cut(s)	712
MseI	TTAA	6 cut(s)	81, 108, 450, 675, 704, 1031
MslI	CAYNNNNRTG	2 cut(s)	72, 159
MspA1I	CMGCKG	1 cut(s)	943
MspR9I	CCNGG	4 cut(s)	465, 600, 806, 1003
Mva1269I	GAATGC	1 cut(s)	952
MvaI	CCWGG	4 cut(s)	465, 600, 806, 1003
MwoI	GCNNNNNNNGC	2 cut(s)	95, 272
NdeII	GATC	5 cut(s)	353, 563, 620, 865, 895
NheI	GCTAGC	1 cut(s)	125
NlaIII	CATG	3 cut(s)	182, 257, 473
NlaIV	GGNNCC	1 cut(s)	718
NmuCI	GTSAC	1 cut(s)	838
NsiI	ATGCAT	1 cut(s)	712
OliI	CACNNNNGTG	1 cut(s)	159
PctI	GAATGC	1 cut(s)	952
PkrI	GCNGC	2 cut(s)	661, 942
PsiI	TTATAA	1 cut(s)	362
Psp124BI	GAGCTC	1 cut(s)	971
Psp6I	CCWGG	4 cut(s)	463, 598, 804, 1001
PspGI	CCWGG	4 cut(s)	463, 598, 804, 1001
PspN4I	GGNNCC	1 cut(s)	718
PspPI	GGNCC	1 cut(s)	307
PsrI	GAACNNNNNNTAC	2 cut(s)	474, 506
PsuI	RGATCY	3 cut(s)	563, 865, 895
PvuII	CAGCTG	1 cut(s)	943
RsaI	GTAC	4 cut(s)	261, 323, 582, 1052
RsaNI	GTAC	4 cut(s)	260, 322, 581, 1051
RseI	CAYNNNNRTG	2 cut(s)	72, 159
SacI	GAGCTC	1 cut(s)	971
SaqAI	TTAA	6 cut(s)	81, 108, 450, 675, 704, 1031
SatI	GCNGC	2 cut(s)	660, 941
Sau3AI	GATC	5 cut(s)	353, 563, 620, 865, 895
Sau96I	GGNCC	1 cut(s)	307
ScrFI	CCNGG	4 cut(s)	465, 600, 806, 1003
SduI	GDGCHC	1 cut(s)	971
SfaNI	GCATC	2 cut(s)	719, 748
SfcI	CTRYAG	1 cut(s)	157
SinI	GGWCC	1 cut(s)	307
SmiMI	CAYNNNNRTG	2 cut(s)	72, 159
SmlI	CTYRAG	2 cut(s)	317, 964
SmoI	CTYRAG	2 cut(s)	317, 964
Sse9I	AATT	9 cut(s)	22, 109, 343, 363, 516, 651, 668, 832, 1016
SsiI	CCGC	1 cut(s)	305
SspMI	CTAG	3 cut(s)	90, 126, 875
SstI	GAGCTC	1 cut(s)	971
StyD4I	CCNGG	4 cut(s)	463, 598, 804, 1001
StyI	CCWWGG	3 cut(s)	874, 951, 1039
TaaI	ACNGT	2 cut(s)	161, 477
TaqI	TCGA	1 cut(s)	18
TasI	AATT	9 cut(s)	22, 109, 343, 363, 516, 651, 668, 832, 1016
TatI	WGTACW	1 cut(s)	1050
Tru1I	TTAA	6 cut(s)	81, 108, 450, 675, 704, 1031
Tru9I	TTAA	6 cut(s)	81, 108, 450, 675, 704, 1031
TscAI	CASTG	5 cut(s)	166, 694, 796, 913, 981
TseFI	GTSAC	1 cut(s)	838
TseI	GCWGC	2 cut(s)	659, 940
Tsp45I	GTSAC	1 cut(s)	838
TspDTI	ATGAA	2 cut(s)	486, 500
TspGWI	ACGGA	1 cut(s)	366
TspRI	CASTG	5 cut(s)	166, 694, 796, 913, 981
VpaK11BI	GGWCC	1 cut(s)	307
XapI	RAATTY	2 cut(s)	22, 1016
XmaJI	CCTAGG	1 cut(s)	874
XmiI	GTMKAC	1 cut(s)	400
XspI	CTAG	3 cut(s)	90, 126, 875
Zsp2I	ATGCAT	1 cut(s)	712

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.