Rh6CG093100

Far upstream element-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0007483
Physical Location & Seq
Reverse (-)
10225778 .. 10226687
910 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG093100.1

Sequence Viewer

Length: 306 bp
ATGACGGATGACAAAGATCGACAGCCGGAAACCGCCGGCGACAGTGCGAAGCGGAAGCTGGAAGACCCCGCCGCCATTAGTATTCTACTCGCGAAACAGAAAGCTCAGGAAATCGCCGCCCGACTCGTCACCAATGCCGAGTCGAAGCGCCCCCGAGTCGACGACGAGTCCTTCCAACCCAACCCCGTCTACACCCCTCCCGCTTACCCTGGTTGGTGTAATTATTGGAAAACAAGGAGAAACAATAAGACAACTGCAATTACAGTCAGGGGCCAAAATCCAGATAACCAGGGATTCAGAAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000375 GO:0001505 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006417 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010586 GO:0010604 GO:0010605 GO:0010608 GO:0010629 GO:0010984 GO:0010985 GO:0010988 GO:0010989 GO:0016070 GO:0016071 GO:0017091 GO:0017148 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031329 GO:0031331 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0034097 GO:0034248 GO:0034249 GO:0034641 GO:0034660 GO:0035925 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043487 GO:0043488 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045019 GO:0045428 GO:0045935 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050779 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051239 GO:0051241 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0061013 GO:0061014 GO:0061157 GO:0061158 GO:0065007 GO:0065008 GO:0070013 GO:0070887 GO:0071310 GO:0071345 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1903311 GO:1903313 GO:1903426 GO:1903427 GO:1904406 GO:2000112 GO:2000113 GO:2000377 GO:2000378
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KH_1

Protein Analysis

101

Amino Acids

11.4

Weight (kDa)

9.41

Isoelectric Point (pI)

52.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 159, 189
AccII CGCG 1 cut(s) 92
AciI CCGC 6 cut(s) 33, 52, 69, 72, 117, 201
AhdI GACNNNNNGTC 1 cut(s) 166
AjnI CCWGG 2 cut(s) 208, 288
AluBI AGCT 3 cut(s) 58, 104, 303
AluI AGCT 3 cut(s) 58, 104, 303
AlwNI CAGNNNCTG 1 cut(s) 303
Ama87I CYCGRG 1 cut(s) 153
AoxI GGCC 1 cut(s) 271
AspLEI GCGC 1 cut(s) 150
AspS9I GGNCC 1 cut(s) 271
AsuHPI GGTGA 1 cut(s) 121
AvaI CYCGRG 1 cut(s) 153
BbsI GAAGAC 1 cut(s) 69
BciT130I CCWGG 2 cut(s) 210, 290
BfoI RGCGCY 1 cut(s) 151
BisI GCNGC 2 cut(s) 72, 117
BlsI GCNGC 2 cut(s) 73, 118
Bme1390I CCNGG 2 cut(s) 210, 290
BmeRI GACNNNNNGTC 1 cut(s) 166
BmeT110I CYCGRG 1 cut(s) 153
BmgT120I GGNCC 1 cut(s) 271
BmiI GGNNCC 1 cut(s) 272
BmrFI CCNGG 2 cut(s) 210, 290
BpiI GAAGAC 1 cut(s) 69
Bpu10I CCTNAGC 1 cut(s) 105
BsaJI CCNNGG 2 cut(s) 208, 289
Bse118I RCCGGY 1 cut(s) 35
BseBI CCWGG 2 cut(s) 210, 290
BseDI CCNNGG 2 cut(s) 208, 289
BseGI GGATG 1 cut(s) 13
BseMII CTCAG 1 cut(s) 119
Bsh1236I CGCG 1 cut(s) 92
BshFI GGCC 1 cut(s) 273
BsiHKCI CYCGRG 1 cut(s) 153
BsiSI CCGG 2 cut(s) 26, 36
BsnI GGCC 1 cut(s) 273
BsoBI CYCGRG 1 cut(s) 153
Bsp143I GATC 1 cut(s) 16
Bsp68I TCGCGA 1 cut(s) 92
BspACI CCGC 6 cut(s) 33, 52, 69, 72, 117, 201
BspANI GGCC 1 cut(s) 273
BspCNI CTCAG 1 cut(s) 118
BspFNI CGCG 1 cut(s) 92
BspLI GGNNCC 1 cut(s) 272
BsrFI RCCGGY 1 cut(s) 35
BssAI RCCGGY 1 cut(s) 35
BssECI CCNNGG 2 cut(s) 208, 289
BssMI GATC 1 cut(s) 16
Bst2UI CCWGG 2 cut(s) 210, 290
Bst4CI ACNGT 2 cut(s) 44, 265
BstC8I GCNNGC 1 cut(s) 37
BstDEI CTNAG 1 cut(s) 105
BstF5I GGATG 1 cut(s) 13
BstFNI CGCG 1 cut(s) 92
BstH2I RGCGCY 1 cut(s) 151
BstHHI GCGC 1 cut(s) 150
BstKTI GATC 1 cut(s) 19
BstMBI GATC 1 cut(s) 16
BstNI CCWGG 2 cut(s) 210, 290
BstSCI CCNGG 2 cut(s) 208, 288
BstUI CGCG 1 cut(s) 92
BstV2I GAAGAC 1 cut(s) 69
BsuRI GGCC 1 cut(s) 273
BtsCI GGATG 1 cut(s) 13
BtsIMutI CAGTG 1 cut(s) 49
BtuMI TCGCGA 1 cut(s) 92
Cac8I GCNNGC 1 cut(s) 37
CaiI CAGNNNCTG 1 cut(s) 303
CfoI GCGC 1 cut(s) 150
Cfr10I RCCGGY 1 cut(s) 35
Cfr13I GGNCC 1 cut(s) 271
CviJI RGCY 5 cut(s) 25, 58, 104, 273, 303
CviKI_1 RGCY 5 cut(s) 25, 58, 104, 273, 303
DdeI CTNAG 1 cut(s) 105
DpnI GATC 1 cut(s) 18
DpnII GATC 1 cut(s) 16
DriI GACNNNNNGTC 1 cut(s) 166
Eam1105I GACNNNNNGTC 1 cut(s) 166
Eco88I CYCGRG 1 cut(s) 153
EcoRII CCWGG 2 cut(s) 208, 288
FauI CCCGC 2 cut(s) 76, 208
FblI GTMKAC 2 cut(s) 159, 189
Fnu4HI GCNGC 2 cut(s) 72, 117
FokI GGATG 1 cut(s) 20
Fsp4HI GCNGC 2 cut(s) 72, 117
GlaI GCGC 1 cut(s) 149
GluI GCNGC 2 cut(s) 72, 117
HaeII RGCGCY 1 cut(s) 151
HaeIII GGCC 1 cut(s) 273
HapII CCGG 2 cut(s) 26, 36
HhaI GCGC 1 cut(s) 150
Hin6I GCGC 1 cut(s) 148
HinP1I GCGC 1 cut(s) 148
HincII GTYRAC 1 cut(s) 160
HindII GTYRAC 1 cut(s) 160
HinfI GANTC 5 cut(s) 123, 140, 156, 167, 294
HpaII CCGG 2 cut(s) 26, 36
HphI GGTGA 1 cut(s) 121
Hpy166II GTNNAC 2 cut(s) 160, 190
Hpy188I TCNGA 1 cut(s) 299
Hpy188III TCNNGA 3 cut(s) 91, 107, 281
Hpy8I GTNNAC 2 cut(s) 160, 190
Hpy99I CGWCG 2 cut(s) 164, 167
HpyAV CCTTC 1 cut(s) 181
HpyCH4III ACNGT 2 cut(s) 44, 265
HpyCH4V TGCA 1 cut(s) 257
HpyF3I CTNAG 1 cut(s) 105
HspAI GCGC 1 cut(s) 148
KroI GCCGGC 1 cut(s) 35
KroNI GCCGGC 1 cut(s) 37
Kzo9I GATC 1 cut(s) 16
MaeIII GTNAC 1 cut(s) 127
MalI GATC 1 cut(s) 18
MboI GATC 1 cut(s) 16
MboII GAAGA 1 cut(s) 74
MluCI AATT 2 cut(s) 220, 258
MlyI GAGTC 4 cut(s) 117, 149, 165, 176
MmeI TCCRAC 1 cut(s) 199
MnlI CCTC 1 cut(s) 207
MreI CGCCGGCG 1 cut(s) 35
MroNI GCCGGC 1 cut(s) 35
MspI CCGG 2 cut(s) 26, 36
MspR9I CCNGG 2 cut(s) 210, 290
MvaI CCWGG 2 cut(s) 210, 290
MvnI CGCG 1 cut(s) 92
NaeI GCCGGC 1 cut(s) 37
NdeII GATC 1 cut(s) 16
NgoMIV GCCGGC 1 cut(s) 35
NlaIV GGNNCC 1 cut(s) 272
NmeAIII GCCGAG 1 cut(s) 163
NmuCI GTSAC 1 cut(s) 127
NruI TCGCGA 1 cut(s) 92
PdiI GCCGGC 1 cut(s) 37
PfeI GAWTC 1 cut(s) 294
PkrI GCNGC 2 cut(s) 73, 118
PleI GAGTC 4 cut(s) 117, 148, 164, 175
PpsI GAGTC 4 cut(s) 117, 148, 164, 175
Psp6I CCWGG 2 cut(s) 208, 288
PspGI CCWGG 2 cut(s) 208, 288
PspN4I GGNNCC 1 cut(s) 272
PspPI GGNCC 1 cut(s) 271
PstNI CAGNNNCTG 1 cut(s) 303
RruI TCGCGA 1 cut(s) 92
SalI GTCGAC 1 cut(s) 158
SatI GCNGC 2 cut(s) 72, 117
Sau3AI GATC 1 cut(s) 16
Sau96I GGNCC 1 cut(s) 271
SchI GAGTC 4 cut(s) 117, 149, 165, 176
ScrFI CCNGG 2 cut(s) 210, 290
SetI ASST 3 cut(s) 60, 106, 305
SgrAI CRCCGGYG 1 cut(s) 35
Sse9I AATT 2 cut(s) 220, 258
SsiI CCGC 6 cut(s) 33, 52, 69, 72, 117, 201
StyD4I CCNGG 2 cut(s) 208, 288
TaaI ACNGT 2 cut(s) 44, 265
TaqI TCGA 3 cut(s) 19, 143, 159
TasI AATT 2 cut(s) 220, 258
TauI GCSGC 2 cut(s) 74, 119
TfiI GAWTC 1 cut(s) 294
TscAI CASTG 1 cut(s) 49
TseFI GTSAC 1 cut(s) 127
Tsp45I GTSAC 1 cut(s) 127
TspGWI ACGGA 1 cut(s) 20
TspRI CASTG 1 cut(s) 49
XmiI GTMKAC 2 cut(s) 159, 189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.