Rroxscaffold_6G00423380

Far upstream element-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0007483
Physical Location & Seq
Reverse (-)
44483509 .. 44506390
22882 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00423380.1

Sequence Viewer

Length: 582 bp
ATGGTTGCTTTGATAATTGGCAAGGGGTTTGAGACTATCAAGAATATGCAAACCAAGTCGGGATCTCGTATTCGGATTGTACCATTATACCTTCCTCCTGGTGATAAGTCAACCGAGAGATCGGTATATATAAATGGAGGGAAAGAGCAAATTGAGGTAGCCAAAGAATTGATAAACGAAGTTGCAAGTGAATTGATGAAAAACACAAAATCTACCTTTAAAATACAAAGTTTGAATTACCAAAAGCCCTGCTGGTTAAAAGAAATCGGACTACCACCTGCTAGTCAAGTAACAATAGAATATGGGGAAGAAGAAATTATCACCATACAGGACTCCAAGTGGTCTATGGTCTGCAAGTGTCCAGGTGATTTCAACTTTCTCATGCTTCTTAATACAACTTTGGTGCTGCAAAATCATTTGGCTTTCAAAGTCCACAAGCTCTATGGAGTATGGAAAGAACGGAAGATTCGCGACTCTCGGAGTACGTGGGAGAATGCATCGGAATCCGGTGTTGCTAGGCGTAGTGAAGAAACGATGTTGGGCCTCAAAACAGGCATTCATGAATGGGCTTCACGAGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000375 GO:0001505 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006417 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010586 GO:0010604 GO:0010605 GO:0010608 GO:0010629 GO:0010984 GO:0010985 GO:0010988 GO:0010989 GO:0016070 GO:0016071 GO:0017091 GO:0017148 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031329 GO:0031331 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0034097 GO:0034248 GO:0034249 GO:0034641 GO:0034660 GO:0035925 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043487 GO:0043488 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045019 GO:0045428 GO:0045935 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050779 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051239 GO:0051241 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0061013 GO:0061014 GO:0061157 GO:0061158 GO:0065007 GO:0065008 GO:0070013 GO:0070887 GO:0071310 GO:0071345 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1903311 GO:1903313 GO:1903426 GO:1903427 GO:1904406 GO:2000112 GO:2000113 GO:2000377 GO:2000378
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KH_1

Protein Analysis

193

Amino Acids

21.95

Weight (kDa)

9.06

Isoelectric Point (pI)

43.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KH_1 PF00013 1 - 60 8.2e-12 KH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 286
Acc36I ACCTGC 1 cut(s) 286
AccII CGCG 1 cut(s) 471
AclWI GGATC 1 cut(s) 70
AfaI GTAC 2 cut(s) 81, 484
AgsI TTSAA 3 cut(s) 235, 373, 427
AjnI CCWGG 2 cut(s) 97, 361
AluBI AGCT 1 cut(s) 439
AluI AGCT 1 cut(s) 439
Alw26I GTCTC 1 cut(s) 26
AlwI GGATC 1 cut(s) 70
AoxI GGCC 1 cut(s) 541
ApeKI GCWGC 1 cut(s) 406
AspS9I GGNCC 1 cut(s) 541
AsuHPI GGTGA 3 cut(s) 113, 313, 377
BauI CACGAG 1 cut(s) 573
BbvI GCAGC 1 cut(s) 393
BciT130I CCWGG 2 cut(s) 99, 363
BcoDI GTCTC 1 cut(s) 26
BfaI CTAG 2 cut(s) 282, 516
BfuAI ACCTGC 1 cut(s) 286
BisI GCNGC 1 cut(s) 407
BlsI GCNGC 1 cut(s) 408
Bme1390I CCNGG 2 cut(s) 99, 363
BmgT120I GGNCC 1 cut(s) 541
BmrFI CCNGG 2 cut(s) 99, 363
BmsI GCATC 1 cut(s) 506
BsaAI YACGTR 1 cut(s) 486
BsaWI WCCGGW 1 cut(s) 506
BseBI CCWGG 2 cut(s) 99, 363
BseXI GCAGC 1 cut(s) 393
Bsh1236I CGCG 1 cut(s) 471
BshFI GGCC 1 cut(s) 543
BsiSI CCGG 1 cut(s) 507
BsmAI GTCTC 1 cut(s) 26
BsmI GAATGC 2 cut(s) 499, 555
BsnI GGCC 1 cut(s) 543
Bsp143I GATC 2 cut(s) 62, 119
Bsp68I TCGCGA 1 cut(s) 471
BspANI GGCC 1 cut(s) 543
BspFNI CGCG 1 cut(s) 471
BspHI TCATGA 1 cut(s) 559
BspMI ACCTGC 1 cut(s) 286
BspPI GGATC 1 cut(s) 70
BssMI GATC 2 cut(s) 62, 119
BssSI CACGAG 1 cut(s) 573
Bst2BI CACGAG 1 cut(s) 573
Bst2UI CCWGG 2 cut(s) 99, 363
BstBAI YACGTR 1 cut(s) 486
BstFNI CGCG 1 cut(s) 471
BstKTI GATC 2 cut(s) 65, 122
BstMAI GTCTC 1 cut(s) 26
BstMBI GATC 2 cut(s) 62, 119
BstNI CCWGG 2 cut(s) 99, 363
BstSCI CCNGG 2 cut(s) 97, 361
BstUI CGCG 1 cut(s) 471
BstV1I GCAGC 1 cut(s) 393
BstX2I RGATCY 1 cut(s) 62
BstYI RGATCY 1 cut(s) 62
BsuRI GGCC 1 cut(s) 543
BtuMI TCGCGA 1 cut(s) 471
BveI ACCTGC 1 cut(s) 286
CciI TCATGA 1 cut(s) 559
Cfr13I GGNCC 1 cut(s) 541
Csp6I GTAC 2 cut(s) 80, 483
CviAII CATG 2 cut(s) 382, 560
CviJI RGCY 6 cut(s) 161, 247, 422, 439, 543, 569
CviKI_1 RGCY 6 cut(s) 161, 247, 422, 439, 543, 569
CviQI GTAC 2 cut(s) 80, 483
DpnI GATC 2 cut(s) 64, 121
DpnII GATC 2 cut(s) 62, 119
DraI TTTAAA 1 cut(s) 220
EcoRII CCWGG 2 cut(s) 97, 361
EcoT22I ATGCAT 1 cut(s) 499
FaeI CATG 2 cut(s) 385, 563
FatI CATG 2 cut(s) 381, 559
Fnu4HI GCNGC 1 cut(s) 407
Fsp4HI GCNGC 1 cut(s) 407
FspBI CTAG 2 cut(s) 282, 516
GluI GCNGC 1 cut(s) 407
HaeIII GGCC 1 cut(s) 543
HapII CCGG 1 cut(s) 507
Hin1II CATG 2 cut(s) 385, 563
HincII GTYRAC 1 cut(s) 111
HindII GTYRAC 1 cut(s) 111
HinfI GANTC 4 cut(s) 332, 466, 473, 503
HpaII CCGG 1 cut(s) 507
HphI GGTGA 3 cut(s) 113, 313, 377
Hpy166II GTNNAC 2 cut(s) 111, 433
Hpy188I TCNGA 4 cut(s) 75, 269, 480, 502
Hpy188III TCNNGA 5 cut(s) 40, 60, 470, 560, 573
Hpy8I GTNNAC 2 cut(s) 111, 433
HpyAV CCTTC 1 cut(s) 101
HpyCH4IV ACGT 1 cut(s) 485
HpyCH4V TGCA 5 cut(s) 49, 185, 354, 409, 497
HpySE526I ACGT 1 cut(s) 485
Hsp92II CATG 2 cut(s) 385, 563
Kzo9I GATC 2 cut(s) 62, 119
Lsp1109I GCAGC 1 cut(s) 393
LweI GCATC 1 cut(s) 506
MaeI CTAG 2 cut(s) 282, 516
MaeII ACGT 1 cut(s) 485
MaeIII GTNAC 1 cut(s) 289
MalI GATC 2 cut(s) 64, 121
MboI GATC 2 cut(s) 62, 119
MboII GAAGA 4 cut(s) 320, 323, 475, 539
MflI RGATCY 1 cut(s) 62
MluCI AATT 6 cut(s) 15, 150, 167, 191, 235, 315
MlyI GAGTC 2 cut(s) 326, 467
MnlI CCTC 4 cut(s) 105, 131, 148, 554
Mph1103I ATGCAT 1 cut(s) 499
MseI TTAA 3 cut(s) 219, 257, 390
MspI CCGG 1 cut(s) 507
MspR9I CCNGG 2 cut(s) 99, 363
Mva1269I GAATGC 2 cut(s) 499, 555
MvaI CCWGG 2 cut(s) 99, 363
MvnI CGCG 1 cut(s) 471
NdeII GATC 2 cut(s) 62, 119
NlaIII CATG 2 cut(s) 385, 563
NruI TCGCGA 1 cut(s) 471
NsiI ATGCAT 1 cut(s) 499
PagI TCATGA 1 cut(s) 559
PaqCI CACCTGC 1 cut(s) 286
PctI GAATGC 2 cut(s) 499, 555
PfeI GAWTC 2 cut(s) 466, 503
PkrI GCNGC 1 cut(s) 408
PleI GAGTC 2 cut(s) 326, 467
PpsI GAGTC 2 cut(s) 326, 467
Ppu21I YACGTR 1 cut(s) 486
Psp6I CCWGG 2 cut(s) 97, 361
PspGI CCWGG 2 cut(s) 97, 361
PspPI GGNCC 1 cut(s) 541
PsuI RGATCY 1 cut(s) 62
RruI TCGCGA 1 cut(s) 471
RsaI GTAC 2 cut(s) 81, 484
RsaNI GTAC 2 cut(s) 80, 483
SaqAI TTAA 3 cut(s) 219, 257, 390
SatI GCNGC 1 cut(s) 407
Sau3AI GATC 2 cut(s) 62, 119
Sau96I GGNCC 1 cut(s) 541
SchI GAGTC 2 cut(s) 326, 467
ScrFI CCNGG 2 cut(s) 99, 363
SetI ASST 7 cut(s) 93, 159, 218, 280, 367, 441, 488
SfaNI GCATC 1 cut(s) 506
Sse9I AATT 6 cut(s) 15, 150, 167, 191, 235, 315
SspMI CTAG 2 cut(s) 282, 516
StyD4I CCNGG 2 cut(s) 97, 361
TaiI ACGT 1 cut(s) 488
TasI AATT 6 cut(s) 15, 150, 167, 191, 235, 315
TfiI GAWTC 2 cut(s) 466, 503
Tru1I TTAA 3 cut(s) 219, 257, 390
Tru9I TTAA 3 cut(s) 219, 257, 390
TseI GCWGC 1 cut(s) 406
TspDTI ATGAA 3 cut(s) 212, 548, 576
TspGWI ACGGA 1 cut(s) 475
XcmI CCANNNNNNNNNTGG 2 cut(s) 343, 440
XspI CTAG 2 cut(s) 282, 516
Zsp2I ATGCAT 1 cut(s) 499
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.