Rh6AG103700

Far upstream element-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0007483
Physical Location & Seq
Reverse (-)
15329235 .. 15333094
3860 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG103700.1

Sequence Viewer

Length: 1209 bp
ATGACGGAAGACAAAGATCGACAGCCGGAAACGGCCGGCGACAGTGCGAAGCGGAAGCTGGAAGACCCCGCCGCCATTAGTATTCTGCTCGCGAAACAGAAAGCTCAGGAAATCGCCGCCCGACTCGTCACCAATGCCGAGTCGAAGCGCCCCCGAGTCGACGACGAGTCCTTCCAACCCAACCCCGTCTACACCCCTCCCGCTTACCCTGTGTTCACTGCACAAACAGGTCACTCTTATGGTTCAGGCACCAGCAAGAAAATAGATATTCCAAATGGGAAGGTTGGTGTAATTATTGGAAAACAAGGAGAAACAATAAGACAACTGCAATTACAGTCAGGGGCCAAAATCCAGATAACCAGGGATTCAGAAGCTGATCTTAATTCTCTAACGAGGGATGTGGAGTTGACGGGTACATCTGAACAGATTAGTAGGGCAGAACAACTTATCAATGATGTAATAGCTGAGGTAGCAGGTTGGGATCAGTCAAACCAGGTACCTTCTCAACCACCTCAGGATAGCAGTGGGTACAATTATTATGGACAACAACCACCGATGGGGTCAGCTCCCCCAAATCCTGGCTACTACAATCAGACATCTCAGGGTTATGCTCAGCAGCCACCAAATTATGATCAGGGTTATGCTCAGCAGCCACCAAGTTATGATCAGAGTTACGCTCAGCAACCTCCAAGTTACGATCAGAGTTACGCTCAGCAGCCACCAAATTATGGACAAAACATCTCTAGTCAGGCTCCAGCATCTGATCAGCAACAATATGCAACTTCTGGATATGGGCCACCTGCAGTGTCATCAAGCCTAGATGGAAGCTCTTCCGCACAAACTACTCAACCATCTTCTGCCTATGCACCTCCTTACGGTCAGCCAACGGATAACCCTCAGTCTGGGTATTGGTCTCATCCGAGCAGCACAGGCCAACCACACGCTCAAGCAGGCTATTACCAACCAAGTTACGGAGGGCAGCAGCCAGCTGAAGATGCTTCTGCAGCATCATACGGACAAGGTGGGTATGCTCAGCCAGACCCTTCTGCCAATGGAGAGTCACAGCATCAGCCAGAGCAGCAGTCACAGCCACCTACCAATGGATATGCAGACCAGTCGTCAGCTTCTGAAGCTGAAAGGACTGGTGAGAGGAATGTAGAAGGAGATGGATCAGCCCCTCCAACAGAACCTGTTGGTTCTCAAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000375 GO:0001505 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006417 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010586 GO:0010604 GO:0010605 GO:0010608 GO:0010629 GO:0010984 GO:0010985 GO:0010988 GO:0010989 GO:0016070 GO:0016071 GO:0017091 GO:0017148 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031329 GO:0031331 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0034097 GO:0034248 GO:0034249 GO:0034641 GO:0034660 GO:0035925 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043487 GO:0043488 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045019 GO:0045428 GO:0045935 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050779 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051239 GO:0051241 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0061013 GO:0061014 GO:0061157 GO:0061158 GO:0065007 GO:0065008 GO:0070013 GO:0070887 GO:0071310 GO:0071345 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1903311 GO:1903313 GO:1903426 GO:1903427 GO:1904406 GO:2000112 GO:2000113 GO:2000377 GO:2000378
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KH_1

Protein Analysis

402

Amino Acids

42.89

Weight (kDa)

4.43

Isoelectric Point (pI)

67.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KH_1 PF00013 86 - 152 3.7e-17 KH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 808
Acc36I ACCTGC 2 cut(s) 464, 808
Acc65I GGTACC 1 cut(s) 496
AccB1I GGYRCC 2 cut(s) 248, 496
AccB7I CCANNNNNTGG 2 cut(s) 578, 728
AccI GTMKAC 2 cut(s) 159, 189
AccII CGCG 1 cut(s) 92
AciI CCGC 6 cut(s) 52, 69, 72, 117, 201, 834
AclWI GGATC 2 cut(s) 489, 1177
AcoI YGGCCR 1 cut(s) 33
AcuI CTGAAG 2 cut(s) 1011, 1149
AfaI GTAC 3 cut(s) 415, 498, 530
AfiI CCNNNNNNNGG 7 cut(s) 557, 578, 728, 875, 902, 971, 1100
AhdI GACNNNNNGTC 2 cut(s) 166, 1117
AjnI CCWGG 3 cut(s) 359, 492, 577
AluBI AGCT 9 cut(s) 58, 104, 374, 464, 566, 828, 989, 1124, 1133
AluI AGCT 9 cut(s) 58, 104, 374, 464, 566, 828, 989, 1124, 1133
Alw26I GTCTC 1 cut(s) 918
AlwI GGATC 2 cut(s) 489, 1177
AlwNI CAGNNNCTG 4 cut(s) 374, 761, 1127, 1190
Ama87I CYCGRG 1 cut(s) 153
AoxI GGCC 4 cut(s) 33, 342, 794, 931
ApeKI GCWGC 8 cut(s) 616, 649, 715, 924, 979, 982, 1004, 1078
Asp700I GAANNNNTTC 1 cut(s) 829
Asp718I GGTACC 1 cut(s) 496
AspLEI GCGC 1 cut(s) 150
AspS9I GGNCC 2 cut(s) 342, 794
AsuHPI GGTGA 2 cut(s) 121, 1157
AvaI CYCGRG 1 cut(s) 153
AxyI CCTNAGG 1 cut(s) 513
BanI GGYRCC 2 cut(s) 248, 496
BbsI GAAGAC 2 cut(s) 15, 69
BbvCI CCTCAGC 1 cut(s) 465
BbvI GCAGC 8 cut(s) 628, 661, 727, 936, 991, 994, 1016, 1090
BccI CCATC 4 cut(s) 550, 815, 859, 1160
BceAI ACGGC 1 cut(s) 48
BcgI CGANNNNNNTGC 2 cut(s) 1098, 1132
BciT130I CCWGG 3 cut(s) 361, 494, 579
BclI TGATCA 3 cut(s) 631, 664, 763
BcoDI GTCTC 1 cut(s) 918
BfaI CTAG 2 cut(s) 744, 818
BfmI CTRYAG 2 cut(s) 801, 1002
BfoI RGCGCY 1 cut(s) 151
BfuAI ACCTGC 2 cut(s) 464, 808
BlpI GCTNAGC 5 cut(s) 612, 645, 678, 711, 1032
Bme1390I CCNGG 3 cut(s) 361, 494, 579
BmeRI GACNNNNNGTC 2 cut(s) 166, 1117
BmeT110I CYCGRG 1 cut(s) 153
BmgT120I GGNCC 2 cut(s) 342, 794
BmiI GGNNCC 4 cut(s) 250, 343, 498, 753
BmrFI CCNGG 3 cut(s) 361, 494, 579
BmsI GCATC 4 cut(s) 767, 985, 1016, 1075
BpiI GAAGAC 2 cut(s) 15, 69
BplI GAGNNNNNCTC 4 cut(s) 661, 693, 694, 726
BpmI CTGGAG 1 cut(s) 738
Bpu10I CCTNAGC 2 cut(s) 105, 465
Bpu1102I GCTNAGC 5 cut(s) 612, 645, 678, 711, 1032
BpuEI CTTGAG 1 cut(s) 930
BsaI GGTCTC 1 cut(s) 918
BsaJI CCNNGG 1 cut(s) 360
Bsc4I CCNNNNNNNGG 7 cut(s) 557, 578, 728, 875, 902, 971, 1100
Bse118I RCCGGY 1 cut(s) 35
Bse1I ACTGG 2 cut(s) 1114, 1147
Bse21I CCTNAGG 1 cut(s) 513
BseBI CCWGG 3 cut(s) 361, 494, 579
BseDI CCNNGG 1 cut(s) 360
BseGI GGATG 2 cut(s) 403, 916
BseLI CCNNNNNNNGG 7 cut(s) 557, 578, 728, 875, 902, 971, 1100
BseNI ACTGG 2 cut(s) 1114, 1147
BseX3I CGGCCG 1 cut(s) 33
BseXI GCAGC 8 cut(s) 628, 661, 727, 936, 991, 994, 1016, 1090
BsgI GTGCAG 1 cut(s) 204
Bsh1236I CGCG 1 cut(s) 92
Bsh1285I CGRYCG 1 cut(s) 36
BshFI GGCC 4 cut(s) 35, 344, 796, 933
BshNI GGYRCC 2 cut(s) 248, 496
BsiEI CGRYCG 1 cut(s) 36
BsiHKCI CYCGRG 1 cut(s) 153
BsiSI CCGG 2 cut(s) 26, 36
BslI CCNNNNNNNGG 7 cut(s) 557, 578, 728, 875, 902, 971, 1100
BsmAI GTCTC 1 cut(s) 918
BsnI GGCC 4 cut(s) 35, 344, 796, 933
Bso31I GGTCTC 1 cut(s) 918
BsoBI CYCGRG 1 cut(s) 153
Bsp143I GATC 8 cut(s) 16, 376, 481, 631, 664, 697, 763, 1169
Bsp1720I GCTNAGC 5 cut(s) 612, 645, 678, 711, 1032
Bsp68I TCGCGA 1 cut(s) 92
BspACI CCGC 6 cut(s) 52, 69, 72, 117, 201, 834
BspANI GGCC 4 cut(s) 35, 344, 796, 933
BspFNI CGCG 1 cut(s) 92
BspLI GGNNCC 4 cut(s) 250, 343, 498, 753
BspMAI CTGCAG 2 cut(s) 805, 1006
BspMI ACCTGC 2 cut(s) 464, 808
BspPI GGATC 2 cut(s) 489, 1177
BspQI GCTCTTC 1 cut(s) 835
BspT107I GGYRCC 2 cut(s) 248, 496
BspTNI GGTCTC 1 cut(s) 918
BsrFI RCCGGY 1 cut(s) 35
BsrI ACTGG 2 cut(s) 1114, 1147
BssAI RCCGGY 1 cut(s) 35
BssECI CCNNGG 1 cut(s) 360
BssMI GATC 8 cut(s) 16, 376, 481, 631, 664, 697, 763, 1169
Bst2UI CCWGG 3 cut(s) 361, 494, 579
Bst4CI ACNGT 3 cut(s) 44, 336, 878
Bst6I CTCTTC 1 cut(s) 835
BstC8I GCNNGC 4 cut(s) 37, 90, 952, 987
BstF5I GGATG 2 cut(s) 403, 916
BstFNI CGCG 1 cut(s) 92
BstH2I RGCGCY 1 cut(s) 151
BstHHI GCGC 1 cut(s) 150
BstKTI GATC 8 cut(s) 19, 379, 484, 634, 667, 700, 766, 1172
BstMAI GTCTC 1 cut(s) 918
BstMBI GATC 8 cut(s) 16, 376, 481, 631, 664, 697, 763, 1169
BstMCI CGRYCG 1 cut(s) 36
BstMWI GCNNNNNNNGC 7 cut(s) 470, 930, 995, 1004, 1078, 1087, 1130
BstNI CCWGG 3 cut(s) 361, 494, 579
BstSCI CCNGG 3 cut(s) 359, 492, 577
BstSFI CTRYAG 2 cut(s) 801, 1002
BstUI CGCG 1 cut(s) 92
BstV1I GCAGC 8 cut(s) 628, 661, 727, 936, 991, 994, 1016, 1090
BstV2I GAAGAC 2 cut(s) 15, 69
BstZI CGGCCG 1 cut(s) 33
Bsu36I CCTNAGG 1 cut(s) 513
BsuRI GGCC 4 cut(s) 35, 344, 796, 933
BtsCI GGATG 2 cut(s) 403, 916
BtsI GCAGTG 3 cut(s) 216, 529, 810
BtsIMutI CAGTG 4 cut(s) 49, 216, 529, 810
BtuMI TCGCGA 1 cut(s) 92
BveI ACCTGC 2 cut(s) 464, 808
Cac8I GCNNGC 4 cut(s) 37, 90, 952, 987
CaiI CAGNNNCTG 4 cut(s) 374, 761, 1127, 1190
CfoI GCGC 1 cut(s) 150
Cfr10I RCCGGY 1 cut(s) 35
Cfr13I GGNCC 2 cut(s) 342, 794
CsiI ACCWGGT 1 cut(s) 492
Csp6I GTAC 3 cut(s) 414, 497, 529
CviQI GTAC 3 cut(s) 414, 497, 529
DpnI GATC 8 cut(s) 18, 378, 483, 633, 666, 699, 765, 1171
DpnII GATC 8 cut(s) 16, 376, 481, 631, 664, 697, 763, 1169
DriI GACNNNNNGTC 2 cut(s) 166, 1117
EaeI YGGCCR 1 cut(s) 33
EagI CGGCCG 1 cut(s) 33
Eam1104I CTCTTC 1 cut(s) 835
Eam1105I GACNNNNNGTC 2 cut(s) 166, 1117
EarI CTCTTC 1 cut(s) 835
EclXI CGGCCG 1 cut(s) 33
Eco31I GGTCTC 1 cut(s) 918
Eco52I CGGCCG 1 cut(s) 33
Eco57I CTGAAG 2 cut(s) 1011, 1149
Eco81I CCTNAGG 1 cut(s) 513
Eco88I CYCGRG 1 cut(s) 153
EcoRII CCWGG 3 cut(s) 359, 492, 577
FalI AAGNNNNNCTT 2 cut(s) 363, 395
FauI CCCGC 2 cut(s) 76, 208
FbaI TGATCA 3 cut(s) 631, 664, 763
FblI GTMKAC 2 cut(s) 159, 189
FokI GGATG 2 cut(s) 410, 903
FspBI CTAG 2 cut(s) 744, 818
GlaI GCGC 1 cut(s) 149
GsuI CTGGAG 1 cut(s) 738
HaeII RGCGCY 1 cut(s) 151
HaeIII GGCC 4 cut(s) 35, 344, 796, 933
HapII CCGG 2 cut(s) 26, 36
HhaI GCGC 1 cut(s) 150
Hin6I GCGC 1 cut(s) 148
HinP1I GCGC 1 cut(s) 148
HincII GTYRAC 2 cut(s) 160, 408
HindII GTYRAC 2 cut(s) 160, 408
HinfI GANTC 6 cut(s) 123, 140, 156, 167, 365, 1058
HpaII CCGG 2 cut(s) 26, 36
HphI GGTGA 2 cut(s) 121, 1157
Hpy166II GTNNAC 4 cut(s) 160, 190, 216, 408
Hpy188I TCNGA 8 cut(s) 370, 421, 594, 669, 702, 763, 921, 1129
Hpy188III TCNNGA 5 cut(s) 91, 107, 352, 515, 786
Hpy8I GTNNAC 4 cut(s) 160, 190, 216, 408
Hpy99I CGWCG 2 cut(s) 164, 167
HpyAV CCTTC 5 cut(s) 181, 274, 510, 1053, 1154
HpyCH4III ACNGT 3 cut(s) 44, 336, 878
HpyCH4V TGCA 7 cut(s) 221, 328, 779, 803, 866, 1004, 1109
HpyF10VI GCNNNNNNNGC 7 cut(s) 470, 930, 995, 1004, 1078, 1087, 1130
HspAI GCGC 1 cut(s) 148
KpnI GGTACC 1 cut(s) 500
KroI GCCGGC 1 cut(s) 35
KroNI GCCGGC 1 cut(s) 37
Ksp22I TGATCA 3 cut(s) 631, 664, 763
Kzo9I GATC 8 cut(s) 16, 376, 481, 631, 664, 697, 763, 1169
LguI GCTCTTC 1 cut(s) 835
LmnI GCTCC 2 cut(s) 571, 757
Lsp1109I GCAGC 8 cut(s) 628, 661, 727, 936, 991, 994, 1016, 1090
LweI GCATC 4 cut(s) 767, 985, 1016, 1075
MabI ACCWGGT 1 cut(s) 492
MaeI CTAG 2 cut(s) 744, 818
MaeIII GTNAC 8 cut(s) 127, 230, 671, 692, 704, 968, 1059, 1083
MalI GATC 8 cut(s) 18, 378, 483, 633, 666, 699, 765, 1171
MboI GATC 8 cut(s) 16, 376, 481, 631, 664, 697, 763, 1169
MboII GAAGA 5 cut(s) 20, 74, 822, 846, 1004
MluCI AATT 6 cut(s) 291, 329, 382, 532, 625, 724
MlyI GAGTC 5 cut(s) 117, 149, 165, 176, 1067
MmeI TCCRAC 2 cut(s) 199, 1205
MroNI GCCGGC 1 cut(s) 35
MroXI GAANNNNTTC 1 cut(s) 829
MseI TTAA 1 cut(s) 381
MslI CAYNNNNRTG 1 cut(s) 237
MspA1I CMGCKG 1 cut(s) 989
MspI CCGG 2 cut(s) 26, 36
MspR9I CCNGG 3 cut(s) 361, 494, 579
MvaI CCWGG 3 cut(s) 361, 494, 579
MvnI CGCG 1 cut(s) 92
MwoI GCNNNNNNNGC 7 cut(s) 470, 930, 995, 1004, 1078, 1087, 1130
NaeI GCCGGC 1 cut(s) 37
NdeII GATC 8 cut(s) 16, 376, 481, 631, 664, 697, 763, 1169
NgoMIV GCCGGC 1 cut(s) 35
NlaIV GGNNCC 4 cut(s) 250, 343, 498, 753
NmeAIII GCCGAG 1 cut(s) 163
NmuCI GTSAC 4 cut(s) 127, 230, 1059, 1083
NruI TCGCGA 1 cut(s) 92
PaqCI CACCTGC 1 cut(s) 808
PciSI GCTCTTC 1 cut(s) 835
PdiI GCCGGC 1 cut(s) 37
PdmI GAANNNNTTC 1 cut(s) 829
PfeI GAWTC 1 cut(s) 365
PflMI CCANNNNNTGG 2 cut(s) 578, 728
PleI GAGTC 5 cut(s) 117, 148, 164, 175, 1066
PpsI GAGTC 5 cut(s) 117, 148, 164, 175, 1066
Psp6I CCWGG 3 cut(s) 359, 492, 577
PspGI CCWGG 3 cut(s) 359, 492, 577
PspN4I GGNNCC 4 cut(s) 250, 343, 498, 753
PspPI GGNCC 2 cut(s) 342, 794
PstI CTGCAG 2 cut(s) 805, 1006
PstNI CAGNNNCTG 4 cut(s) 374, 761, 1127, 1190
PvuII CAGCTG 1 cut(s) 989
RruI TCGCGA 1 cut(s) 92
RsaI GTAC 3 cut(s) 415, 498, 530
RsaNI GTAC 3 cut(s) 414, 497, 529
RseI CAYNNNNRTG 1 cut(s) 237
SalI GTCGAC 1 cut(s) 158
SapI GCTCTTC 1 cut(s) 835
SaqAI TTAA 1 cut(s) 381
Sau3AI GATC 8 cut(s) 16, 376, 481, 631, 664, 697, 763, 1169
Sau96I GGNCC 2 cut(s) 342, 794
SchI GAGTC 5 cut(s) 117, 149, 165, 176, 1067
ScrFI CCNGG 3 cut(s) 361, 494, 579
SexAI ACCWGGT 1 cut(s) 492
SfaNI GCATC 4 cut(s) 767, 985, 1016, 1075
SfcI CTRYAG 2 cut(s) 801, 1002
SmiMI CAYNNNNRTG 1 cut(s) 237
SmlI CTYRAG 1 cut(s) 945
SmoI CTYRAG 1 cut(s) 945
Sse9I AATT 6 cut(s) 291, 329, 382, 532, 625, 724
SsiI CCGC 6 cut(s) 52, 69, 72, 117, 201, 834
SspMI CTAG 2 cut(s) 744, 818
StyD4I CCNGG 3 cut(s) 359, 492, 577
TaaI ACNGT 3 cut(s) 44, 336, 878
TaqI TCGA 3 cut(s) 19, 143, 159
TasI AATT 6 cut(s) 291, 329, 382, 532, 625, 724
TauI GCSGC 2 cut(s) 74, 119
TfiI GAWTC 1 cut(s) 365
Tru1I TTAA 1 cut(s) 381
Tru9I TTAA 1 cut(s) 381
TscAI CASTG 4 cut(s) 49, 223, 529, 810
TseFI GTSAC 4 cut(s) 127, 230, 1059, 1083
TseI GCWGC 8 cut(s) 616, 649, 715, 924, 979, 982, 1004, 1078
Tsp45I GTSAC 4 cut(s) 127, 230, 1059, 1083
TspGWI ACGGA 4 cut(s) 20, 902, 987, 1029
TspRI CASTG 4 cut(s) 49, 223, 529, 810
Van91I CCANNNNNTGG 2 cut(s) 578, 728
XmiI GTMKAC 2 cut(s) 159, 189
XmnI GAANNNNTTC 1 cut(s) 829
XspI CTAG 2 cut(s) 744, 818
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.