Rmu_sc0025785.1_g000001

Far upstream element-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0025785.1
OG0007483
Physical Location & Seq
Forward (+)
1 .. 3096
3096 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0025785.1_g000001.1.cds

Sequence Viewer

Length: 1401 bp
gttggtgtaattattggaaaacaaggagaaacaataagacaactgcaattacagtcaggggccaaaatccagataaccagggattcagaagctgatcttaattctctaacgagggatgtggagttgacgggtacatctgaacagattagtagggcagaacaacttatcaatgatgtaatagctgaggcagatgcagggggctctgctccatctacaaatcagggatttaactcgatgcaatctggtggggaacagtttgtcatgaaagttccaaataataaggttgctttgataattggcaaggggggtgagactatcaggaatatgcaaaccaagtcaggagctcgtattcagattgtaccattgcaccttcctcctggtgatatgtcaactgagagatcagtatacataaatggagggcaagagcaaattgaggcagccaaagaattggtgaacgaagtaatcagtgggaagcgtttattaaatgcctctggagccaatagctatatgcagcagccatcctatcccccttctggtaattgggccccgcaaggacaacctccaattcagcaacagcagcctcattatgggtatacacaacctggaggttatggtacacctccggcacctccctcgtactatggtaattatccggcccaggtagcaggttgggatcagtcaagccaggtaccttctcaaccacctcaggatagcagtgggtacaattattatggacaacaaccgccgatggggtcagctcccccaaatcctggctactacaatcagacatctcagggttatgctcagcagccaccaaattatgatcagggttatgctcagcagccaccaagttatgatcagagttacgctcagcaacctccaagttatgatcagagttatgctcagcagccaccaaattatggacaaaacatctctagtcaggctccagcatctgatcagcaacaatatgcaacttctggatatgggccacctgcagtgtcatcaagcctagatggaagctcttccgcacaaacgactcaaccatcttctgcctatgcacctccttacggccagccaacagataaccctcagtctgggtattggtctcatccgagcagcacaggccaaccacacgctcaagcaggctattaccaaccaagttacggagggcagcagccagctgaagatacttctgcagcatcatacggacaaggtgggtatgctcagccagacccttctgccaatggagagtcacagcatcagccagagcagcagtcacagccccctaccaatggatatgcagaccagtcgtcagcttctgaagctgaaaggactggtgagaggaatgtagaaggagatggatcagcccctccaacagaacctgttggttctcaaaactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000375 GO:0001505 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006417 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010586 GO:0010604 GO:0010605 GO:0010608 GO:0010629 GO:0010984 GO:0010985 GO:0010988 GO:0010989 GO:0016070 GO:0016071 GO:0017091 GO:0017148 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031329 GO:0031331 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0034097 GO:0034248 GO:0034249 GO:0034641 GO:0034660 GO:0035925 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043487 GO:0043488 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045019 GO:0045428 GO:0045935 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050779 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051239 GO:0051241 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0061013 GO:0061014 GO:0061157 GO:0061158 GO:0065007 GO:0065008 GO:0070013 GO:0070887 GO:0071310 GO:0071345 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1903311 GO:1903313 GO:1903426 GO:1903427 GO:1904406 GO:2000112 GO:2000113 GO:2000377 GO:2000378
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KH_1

Protein Analysis

466

Amino Acids

49.44

Weight (kDa)

4.43

Isoelectric Point (pI)

69.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1000
Acc36I ACCTGC 2 cut(s) 656, 1000
Acc65I GGTACC 1 cut(s) 688
AccB1I GGYRCC 2 cut(s) 625, 688
AccB7I CCANNNNNTGG 2 cut(s) 770, 920
AccI GTMKAC 2 cut(s) 405, 593
AciI CCGC 3 cut(s) 548, 743, 1026
AclWI GGATC 2 cut(s) 681, 1369
AcoI YGGCCR 1 cut(s) 1069
AcuI CTGAAG 2 cut(s) 1203, 1341
AfaI GTAC 6 cut(s) 133, 360, 616, 638, 690, 722
AfiI CCNNNNNNNGG 9 cut(s) 533, 587, 749, 770, 920, 1067, 1094, 1163, 1292
AhdI GACNNNNNGTC 1 cut(s) 1309
AjnI CCWGG 6 cut(s) 77, 376, 601, 657, 684, 769
AluBI AGCT 9 cut(s) 92, 182, 344, 504, 758, 1020, 1181, 1316, 1325
AluI AGCT 9 cut(s) 92, 182, 344, 504, 758, 1020, 1181, 1316, 1325
Alw21I GWGCWC 1 cut(s) 346
Alw26I GTCTC 2 cut(s) 305, 1110
AlwI GGATC 2 cut(s) 681, 1369
AlwNI CAGNNNCTG 4 cut(s) 92, 953, 1319, 1382
AoxI GGCC 6 cut(s) 60, 543, 654, 986, 1069, 1123
ApaI GGGCCC 1 cut(s) 547
Asp700I GAANNNNTTC 1 cut(s) 1021
Asp718I GGTACC 1 cut(s) 688
AspS9I GGNCC 5 cut(s) 60, 543, 544, 655, 986
AsuHPI GGTGA 4 cut(s) 320, 392, 463, 1349
AxyI CCTNAGG 1 cut(s) 705
BaeGI GKGCMC 1 cut(s) 547
BanI GGYRCC 2 cut(s) 625, 688
BanII GRGCYC 3 cut(s) 203, 346, 547
Bbv12I GWGCWC 1 cut(s) 346
BbvCI CCTCAGC 1 cut(s) 183
BccI CCATC 6 cut(s) 217, 526, 742, 1007, 1051, 1352
BceAI ACGGC 1 cut(s) 1084
BcgI CGANNNNNNTGC 4 cut(s) 615, 649, 1290, 1324
BciT130I CCWGG 6 cut(s) 79, 378, 603, 659, 686, 771
BclI TGATCA 4 cut(s) 823, 856, 889, 955
BcoDI GTCTC 2 cut(s) 305, 1110
BfaI CTAG 2 cut(s) 936, 1010
BfmI CTRYAG 2 cut(s) 993, 1194
BfuAI ACCTGC 2 cut(s) 656, 1000
BlpI GCTNAGC 5 cut(s) 804, 837, 870, 903, 1224
Bme1390I CCNGG 6 cut(s) 79, 378, 603, 659, 686, 771
BmeRI GACNNNNNGTC 1 cut(s) 1309
BmgT120I GGNCC 5 cut(s) 60, 543, 544, 655, 986
BmiI GGNNCC 7 cut(s) 61, 496, 545, 546, 627, 690, 945
BmrFI CCNGG 6 cut(s) 79, 378, 603, 659, 686, 771
BmsI GCATC 5 cut(s) 181, 225, 959, 1208, 1267
BplI GAGNNNNNCTC 4 cut(s) 853, 885, 886, 918
BpmI CTGGAG 3 cut(s) 513, 624, 930
Bpu10I CCTNAGC 1 cut(s) 183
Bpu1102I GCTNAGC 5 cut(s) 804, 837, 870, 903, 1224
BpuEI CTTGAG 1 cut(s) 1122
BsaI GGTCTC 1 cut(s) 1110
BsaJI CCNNGG 2 cut(s) 78, 657
Bsc4I CCNNNNNNNGG 9 cut(s) 533, 587, 749, 770, 920, 1067, 1094, 1163, 1292
Bse1I ACTGG 2 cut(s) 1306, 1339
Bse21I CCTNAGG 1 cut(s) 705
Bse3DI GCAATG 1 cut(s) 362
BseBI CCWGG 6 cut(s) 79, 378, 603, 659, 686, 771
BseDI CCNNGG 2 cut(s) 78, 657
BseGI GGATG 3 cut(s) 121, 518, 1108
BseLI CCNNNNNNNGG 9 cut(s) 533, 587, 749, 770, 920, 1067, 1094, 1163, 1292
BseMI GCAATG 1 cut(s) 362
BseNI ACTGG 2 cut(s) 1306, 1339
BseSI GKGCMC 1 cut(s) 547
BshFI GGCC 6 cut(s) 62, 545, 656, 988, 1071, 1125
BshNI GGYRCC 2 cut(s) 625, 688
BsiHKAI GWGCWC 1 cut(s) 346
BsiSI CCGG 2 cut(s) 623, 653
BslI CCNNNNNNNGG 9 cut(s) 533, 587, 749, 770, 920, 1067, 1094, 1163, 1292
BsmAI GTCTC 2 cut(s) 305, 1110
BsnI GGCC 6 cut(s) 62, 545, 656, 988, 1071, 1125
Bso31I GGTCTC 1 cut(s) 1110
Bsp120I GGGCCC 1 cut(s) 543
Bsp1286I GDGCHC 3 cut(s) 203, 346, 547
Bsp143I GATC 8 cut(s) 94, 398, 673, 823, 856, 889, 955, 1361
Bsp1720I GCTNAGC 5 cut(s) 804, 837, 870, 903, 1224
BspACI CCGC 3 cut(s) 548, 743, 1026
BspANI GGCC 6 cut(s) 62, 545, 656, 988, 1071, 1125
BspHI TCATGA 1 cut(s) 261
BspLI GGNNCC 7 cut(s) 61, 496, 545, 546, 627, 690, 945
BspMAI CTGCAG 2 cut(s) 997, 1198
BspMI ACCTGC 2 cut(s) 656, 1000
BspPI GGATC 2 cut(s) 681, 1369
BspQI GCTCTTC 1 cut(s) 1027
BspT107I GGYRCC 2 cut(s) 625, 688
BspTNI GGTCTC 1 cut(s) 1110
BsrDI GCAATG 1 cut(s) 362
BsrI ACTGG 2 cut(s) 1306, 1339
BssECI CCNNGG 2 cut(s) 78, 657
BssMI GATC 8 cut(s) 94, 398, 673, 823, 856, 889, 955, 1361
BssNAI GTATAC 2 cut(s) 406, 594
Bst1107I GTATAC 2 cut(s) 406, 594
Bst2UI CCWGG 6 cut(s) 79, 378, 603, 659, 686, 771
Bst4CI ACNGT 2 cut(s) 54, 255
Bst6I CTCTTC 1 cut(s) 1027
BstC8I GCNNGC 3 cut(s) 1073, 1144, 1179
BstF5I GGATG 3 cut(s) 121, 518, 1108
BstKTI GATC 8 cut(s) 97, 401, 676, 826, 859, 892, 958, 1364
BstMAI GTCTC 2 cut(s) 305, 1110
BstMBI GATC 8 cut(s) 94, 398, 673, 823, 856, 889, 955, 1361
BstMWI GCNNNNNNNGC 7 cut(s) 494, 577, 662, 1122, 1270, 1279, 1322
BstNI CCWGG 6 cut(s) 79, 378, 603, 659, 686, 771
BstSCI CCNGG 6 cut(s) 77, 376, 601, 657, 684, 769
BstSFI CTRYAG 2 cut(s) 993, 1194
BstSLI GKGCMC 1 cut(s) 547
BstXI CCANNNNNNTGG 1 cut(s) 448
BstZ17I GTATAC 2 cut(s) 406, 594
Bsu36I CCTNAGG 1 cut(s) 705
BsuRI GGCC 6 cut(s) 62, 545, 656, 988, 1071, 1125
BtsCI GGATG 3 cut(s) 121, 518, 1108
BtsI GCAGTG 2 cut(s) 721, 1002
BtsIMutI CAGTG 3 cut(s) 472, 721, 1002
BveI ACCTGC 2 cut(s) 656, 1000
Cac8I GCNNGC 3 cut(s) 1073, 1144, 1179
CaiI CAGNNNCTG 4 cut(s) 92, 953, 1319, 1382
CciI TCATGA 1 cut(s) 261
Cfr13I GGNCC 5 cut(s) 60, 543, 544, 655, 986
Csp6I GTAC 6 cut(s) 132, 359, 615, 637, 689, 721
CviAII CATG 1 cut(s) 262
CviQI GTAC 6 cut(s) 132, 359, 615, 637, 689, 721
DpnI GATC 8 cut(s) 96, 400, 675, 825, 858, 891, 957, 1363
DpnII GATC 8 cut(s) 94, 398, 673, 823, 856, 889, 955, 1361
DriI GACNNNNNGTC 1 cut(s) 1309
EaeI YGGCCR 1 cut(s) 1069
Eam1104I CTCTTC 1 cut(s) 1027
Eam1105I GACNNNNNGTC 1 cut(s) 1309
EarI CTCTTC 1 cut(s) 1027
Ecl136II GAGCTC 1 cut(s) 344
Eco24I GRGCYC 3 cut(s) 203, 346, 547
Eco31I GGTCTC 1 cut(s) 1110
Eco53kI GAGCTC 1 cut(s) 344
Eco57I CTGAAG 2 cut(s) 1203, 1341
Eco81I CCTNAGG 1 cut(s) 705
EcoICRI GAGCTC 1 cut(s) 344
EcoO109I RGGNCCY 1 cut(s) 544
EcoRII CCWGG 6 cut(s) 77, 376, 601, 657, 684, 769
EcoT38I GRGCYC 3 cut(s) 203, 346, 547
FaeI CATG 1 cut(s) 265
FalI AAGNNNNNCTT 2 cut(s) 81, 113
FatI CATG 1 cut(s) 261
FauI CCCGC 1 cut(s) 555
FbaI TGATCA 4 cut(s) 823, 856, 889, 955
FblI GTMKAC 2 cut(s) 405, 593
FokI GGATG 3 cut(s) 128, 505, 1095
FriOI GRGCYC 3 cut(s) 203, 346, 547
FspBI CTAG 2 cut(s) 936, 1010
GsuI CTGGAG 3 cut(s) 513, 624, 930
HaeIII GGCC 6 cut(s) 62, 545, 656, 988, 1071, 1125
HapII CCGG 2 cut(s) 623, 653
Hin1II CATG 1 cut(s) 265
HincII GTYRAC 2 cut(s) 126, 390
HindII GTYRAC 2 cut(s) 126, 390
HinfI GANTC 3 cut(s) 83, 1036, 1250
HpaII CCGG 2 cut(s) 623, 653
HphI GGTGA 4 cut(s) 320, 392, 463, 1349
Hpy166II GTNNAC 6 cut(s) 126, 390, 406, 454, 594, 617
Hpy188I TCNGA 9 cut(s) 88, 139, 354, 786, 861, 894, 955, 1113, 1321
Hpy188III TCNNGA 7 cut(s) 70, 262, 319, 339, 492, 707, 978
Hpy8I GTNNAC 6 cut(s) 126, 390, 406, 454, 594, 617
HpyAV CCTTC 5 cut(s) 380, 540, 702, 1245, 1346
HpyCH4III ACNGT 2 cut(s) 54, 255
HpyF10VI GCNNNNNNNGC 7 cut(s) 494, 577, 662, 1122, 1270, 1279, 1322
Hsp92II CATG 1 cut(s) 265
KpnI GGTACC 1 cut(s) 692
Ksp22I TGATCA 4 cut(s) 823, 856, 889, 955
Kzo9I GATC 8 cut(s) 94, 398, 673, 823, 856, 889, 955, 1361
LguI GCTCTTC 1 cut(s) 1027
LmnI GCTCC 5 cut(s) 211, 341, 494, 763, 949
LweI GCATC 5 cut(s) 181, 225, 959, 1208, 1267
MaeI CTAG 2 cut(s) 936, 1010
MaeIII GTNAC 4 cut(s) 863, 1160, 1251, 1275
MalI GATC 8 cut(s) 96, 400, 675, 825, 858, 891, 957, 1363
MboI GATC 8 cut(s) 94, 398, 673, 823, 856, 889, 955, 1361
MboII GAAGA 3 cut(s) 1014, 1038, 1196
MhlI GDGCHC 3 cut(s) 203, 346, 547
MlyI GAGTC 2 cut(s) 1030, 1259
MmeI TCCRAC 1 cut(s) 1397
MroXI GAANNNNTTC 1 cut(s) 1021
MseI TTAA 3 cut(s) 99, 228, 482
MspA1I CMGCKG 1 cut(s) 1181
MspI CCGG 2 cut(s) 623, 653
MspR9I CCNGG 6 cut(s) 79, 378, 603, 659, 686, 771
MvaI CCWGG 6 cut(s) 79, 378, 603, 659, 686, 771
MwoI GCNNNNNNNGC 7 cut(s) 494, 577, 662, 1122, 1270, 1279, 1322
NdeII GATC 8 cut(s) 94, 398, 673, 823, 856, 889, 955, 1361
NlaIII CATG 1 cut(s) 265
NlaIV GGNNCC 7 cut(s) 61, 496, 545, 546, 627, 690, 945
NmuCI GTSAC 2 cut(s) 1251, 1275
PagI TCATGA 1 cut(s) 261
PaqCI CACCTGC 1 cut(s) 1000
PciSI GCTCTTC 1 cut(s) 1027
PdmI GAANNNNTTC 1 cut(s) 1021
PfeI GAWTC 1 cut(s) 83
PflMI CCANNNNNTGG 2 cut(s) 770, 920
PleI GAGTC 2 cut(s) 1030, 1258
PpsI GAGTC 2 cut(s) 1030, 1258
Psp124BI GAGCTC 1 cut(s) 346
Psp6I CCWGG 6 cut(s) 77, 376, 601, 657, 684, 769
PspGI CCWGG 6 cut(s) 77, 376, 601, 657, 684, 769
PspN4I GGNNCC 7 cut(s) 61, 496, 545, 546, 627, 690, 945
PspOMI GGGCCC 1 cut(s) 543
PspPI GGNCC 5 cut(s) 60, 543, 544, 655, 986
PstI CTGCAG 2 cut(s) 997, 1198
PstNI CAGNNNCTG 4 cut(s) 92, 953, 1319, 1382
PvuII CAGCTG 1 cut(s) 1181
RsaI GTAC 6 cut(s) 133, 360, 616, 638, 690, 722
RsaNI GTAC 6 cut(s) 132, 359, 615, 637, 689, 721
SacI GAGCTC 1 cut(s) 346
SapI GCTCTTC 1 cut(s) 1027
SaqAI TTAA 3 cut(s) 99, 228, 482
Sau3AI GATC 8 cut(s) 94, 398, 673, 823, 856, 889, 955, 1361
Sau96I GGNCC 5 cut(s) 60, 543, 544, 655, 986
SchI GAGTC 2 cut(s) 1030, 1259
ScrFI CCNGG 6 cut(s) 79, 378, 603, 659, 686, 771
SduI GDGCHC 3 cut(s) 203, 346, 547
SfaNI GCATC 5 cut(s) 181, 225, 959, 1208, 1267
SfcI CTRYAG 2 cut(s) 993, 1194
SmlI CTYRAG 1 cut(s) 1137
SmoI CTYRAG 1 cut(s) 1137
SsiI CCGC 3 cut(s) 548, 743, 1026
SspMI CTAG 2 cut(s) 936, 1010
SstI GAGCTC 1 cut(s) 346
StyD4I CCNGG 6 cut(s) 77, 376, 601, 657, 684, 769
TaaI ACNGT 2 cut(s) 54, 255
TaqI TCGA 1 cut(s) 233
TfiI GAWTC 1 cut(s) 83
Tru1I TTAA 3 cut(s) 99, 228, 482
Tru9I TTAA 3 cut(s) 99, 228, 482
TscAI CASTG 3 cut(s) 472, 721, 1002
TseFI GTSAC 2 cut(s) 1251, 1275
Tsp45I GTSAC 2 cut(s) 1251, 1275
TspDTI ATGAA 1 cut(s) 278
TspGWI ACGGA 2 cut(s) 1179, 1221
TspRI CASTG 3 cut(s) 472, 721, 1002
Van91I CCANNNNNTGG 2 cut(s) 770, 920
XmiI GTMKAC 2 cut(s) 405, 593
XmnI GAANNNNTTC 1 cut(s) 1021
XspI CTAG 2 cut(s) 936, 1010
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.