RLG00000014538

Far upstream element-binding protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Forward (+)
54484756 .. 54488613
3858 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014538

Sequence Viewer

Length: 1683 bp
ATGACGGAAGACAAAGATCGACAGCCGGAAACCGCCGGCGACAGTGCGAAGCGGAAGCTGGAAGACCCCGCCGCCATTAGTATTCTACTCGCGAAACAGAAAGCTCAGGAAATCGCCGCCCGGCTCGTCACCAATGCCGAGTCGAAGCGCCCCCGAGTCGACGACGAGTCCTTCCAACCCAACCCCGTCTACACCCCTCCTGCTTACCCTGTGTTCACGGCACAAACAGGCCACTCTTATGGTTCAGGCACCAGCAAGAAAATAGATATTCCAAATGGGAAGGTTGGTGTAATTATTGGAAAACAAGGAGAAACAATAAGACAACTACAATTACAGTCAGGGGCCAAAATCCAGATAACCAGGGATTCAGAAGCTGATCTTAATTCTCTAACGAGGGATGTGGAGTTGACGGGTACATCTGAACAGATTAGTAGGGCAGAACAACTTATCAATGATGTAATAGCTGAGGCAGATGCAGGGGGCTCTGCTCCATCTACAAATCAGGGATTTAACTCGATGCAACCTGGAGGGGAACAGTTTGTCATGAAAGTTCCAAACAATAAGGTTGCTTTGATAATTGGCAAGGGGGGTGAGACTATCAGGAATATGCAAACCAAGTCAGGAGCTCGTATTCAGATTGTACCATTGCACCTTCCTCCTGGTGATACGTCAACTGAGAGATCAGTATACATAAATGGAGGGCAAGAGCAAATTGAGGCAGCCAAAGAATTGGTGAACGAAGTAATCAGTGGGAAGCGTTTATTAAATGCCTCTGGAACCAATAGCTATATGCAGCAGCCATCCTATCCCCCTTCTGGTAATTGGGCCCCGCCAGGACAACCTCCAATTCAGCAACAGCAGCCTCATTATGGGTACACACAACCTGGAGGTTATGGTACACCTCCGGCACCTCCCTCGTACTATGGTAATTATCCGGCCCAGGTAGCAGGTTGGGATCAGCCAAACCAGGTACCTTCTCAACCACCTCAGGATAGCAGTGGGTACAATTATTATGGACAACAACCACCGATGGGGTCAGCTCCCCCAAATCCTGGCTACTACAATCAGACATCTCAGGGTTATGCTCAGCAGCCACCAAATTATGATCAGGGTTATGCTCAGCAGCCACCAAGTTATGATCAGAGTTACGCTCAGCAACCTCCAAGTTACGATCAGAGTTATGCTCAGCAGCCACCAAATTATGGACAAAACATCTCTAGTCAGGCTCCAGCATCTGATCAGCAACAATATGCAACTTCTGGATATGGGCCACCTGCAGTGTCATCAAGCCTAGATGGAAGCTCGTCCGCACAAACGACTCAGCCATCTTCTGCCTATGCACCTCCTTACGGCCAGCCAACAGATAACCCTCAGTCTGGGTATTGGTCTCATCCGAGCAGCACAGGCCAGCCTCACGCTCAAGCAGGCTATTACCAACCAAGTTACGGAGGGCAACAGCCAGCCGAAGATGCTTCTGCAGCATCATACGGACAAGGTGGGTATGCTCAGCCAGACCCTTCTGCCAATGGAGAGTCACAGCATCAGCCAGAGCAGCAGTCACAGCCACCTACCAATGGATATGCAGATCAGTCGTCAGCTTCTGAAGCTGAAAGGACTGGTGAGAGGAATGTAGAAGGAGATGGATCAGCCCCTCCAACAGAACCTGTTGGTTCTCAAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

561

Amino Acids

59.65

Weight (kDa)

4.7

Isoelectric Point (pI)

62.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KH_1 PF00013 86 - 152 6.1e-17 KH domain
KH_1 PF00013 181 - 247 2.7e-18 KH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1282
Acc36I ACCTGC 2 cut(s) 938, 1282
Acc65I GGTACC 1 cut(s) 970
AccB1I GGYRCC 3 cut(s) 248, 907, 970
AccB7I CCANNNNNTGG 2 cut(s) 1052, 1202
AccI GTMKAC 3 cut(s) 159, 189, 687
AccII CGCG 1 cut(s) 92
AciI CCGC 7 cut(s) 33, 52, 69, 72, 117, 830, 1308
AclWI GGATC 2 cut(s) 963, 1651
AcoI YGGCCR 1 cut(s) 1351
AcuI CTGAAG 1 cut(s) 1623
AfaI GTAC 7 cut(s) 415, 642, 875, 898, 920, 972, 1004
AfiI CCNNNNNNNGG 9 cut(s) 815, 869, 1031, 1052, 1202, 1349, 1376, 1445, 1574
AhdI GACNNNNNGTC 1 cut(s) 166
AjnI CCWGG 8 cut(s) 359, 523, 658, 832, 883, 939, 966, 1051
Alw21I GWGCWC 1 cut(s) 628
Alw26I GTCTC 2 cut(s) 587, 1392
AlwI GGATC 2 cut(s) 963, 1651
AlwNI CAGNNNCTG 4 cut(s) 374, 1235, 1601, 1664
Ama87I CYCGRG 1 cut(s) 153
AoxI GGCC 7 cut(s) 229, 342, 825, 936, 1268, 1351, 1405
ApaI GGGCCC 1 cut(s) 829
Asp718I GGTACC 1 cut(s) 970
AspLEI GCGC 1 cut(s) 150
AspS9I GGNCC 5 cut(s) 342, 825, 826, 937, 1268
AsuC2I CCSGG 1 cut(s) 121
AsuHPI GGTGA 5 cut(s) 121, 602, 674, 745, 1631
AvaI CYCGRG 1 cut(s) 153
AxyI CCTNAGG 1 cut(s) 987
BaeGI GKGCMC 1 cut(s) 829
BanI GGYRCC 3 cut(s) 248, 907, 970
BanII GRGCYC 3 cut(s) 485, 628, 829
BbsI GAAGAC 2 cut(s) 15, 69
Bbv12I GWGCWC 1 cut(s) 628
BbvCI CCTCAGC 1 cut(s) 465
BccI CCATC 6 cut(s) 499, 808, 1024, 1289, 1333, 1634
BceAI ACGGC 2 cut(s) 234, 1366
BcgI CGANNNNNNTGC 4 cut(s) 897, 931, 1572, 1606
BciT130I CCWGG 8 cut(s) 361, 525, 660, 834, 885, 941, 968, 1053
BclI TGATCA 3 cut(s) 1105, 1138, 1237
BcnI CCSGG 1 cut(s) 121
BcoDI GTCTC 2 cut(s) 587, 1392
BfaI CTAG 2 cut(s) 1218, 1292
BfmI CTRYAG 2 cut(s) 1275, 1476
BfoI RGCGCY 1 cut(s) 151
BfuAI ACCTGC 2 cut(s) 938, 1282
BlpI GCTNAGC 5 cut(s) 1086, 1119, 1152, 1185, 1506
Bme1390I CCNGG 9 cut(s) 121, 361, 525, 660, 834, 885, 941, 968, 1053
BmeRI GACNNNNNGTC 1 cut(s) 166
BmeT110I CYCGRG 1 cut(s) 153
BmgT120I GGNCC 5 cut(s) 342, 825, 826, 937, 1268
BmiI GGNNCC 8 cut(s) 250, 343, 778, 827, 828, 909, 972, 1227
BmrFI CCNGG 9 cut(s) 121, 361, 525, 660, 834, 885, 941, 968, 1053
BmsI GCATC 6 cut(s) 463, 507, 1241, 1459, 1490, 1549
BpiI GAAGAC 2 cut(s) 15, 69
BplI GAGNNNNNCTC 4 cut(s) 1135, 1167, 1168, 1200
BpmI CTGGAG 3 cut(s) 546, 906, 1212
Bpu10I CCTNAGC 2 cut(s) 105, 465
Bpu1102I GCTNAGC 5 cut(s) 1086, 1119, 1152, 1185, 1506
BpuEI CTTGAG 1 cut(s) 1404
BpuMI CCSGG 1 cut(s) 121
BsaI GGTCTC 1 cut(s) 1392
BsaJI CCNNGG 2 cut(s) 360, 939
Bsc4I CCNNNNNNNGG 9 cut(s) 815, 869, 1031, 1052, 1202, 1349, 1376, 1445, 1574
Bse118I RCCGGY 1 cut(s) 35
Bse1I ACTGG 1 cut(s) 1621
Bse21I CCTNAGG 1 cut(s) 987
Bse3DI GCAATG 1 cut(s) 644
BseBI CCWGG 8 cut(s) 361, 525, 660, 834, 885, 941, 968, 1053
BseDI CCNNGG 2 cut(s) 360, 939
BseGI GGATG 3 cut(s) 403, 800, 1390
BseLI CCNNNNNNNGG 9 cut(s) 815, 869, 1031, 1052, 1202, 1349, 1376, 1445, 1574
BseMI GCAATG 1 cut(s) 644
BseNI ACTGG 1 cut(s) 1621
BseSI GKGCMC 1 cut(s) 829
Bsh1236I CGCG 1 cut(s) 92
BshFI GGCC 7 cut(s) 231, 344, 827, 938, 1270, 1353, 1407
BshNI GGYRCC 3 cut(s) 248, 907, 970
BsiHKAI GWGCWC 1 cut(s) 628
BsiHKCI CYCGRG 1 cut(s) 153
BsiSI CCGG 5 cut(s) 26, 36, 121, 905, 935
BslI CCNNNNNNNGG 9 cut(s) 815, 869, 1031, 1052, 1202, 1349, 1376, 1445, 1574
BsmAI GTCTC 2 cut(s) 587, 1392
BsnI GGCC 7 cut(s) 231, 344, 827, 938, 1270, 1353, 1407
Bso31I GGTCTC 1 cut(s) 1392
BsoBI CYCGRG 1 cut(s) 153
Bsp120I GGGCCC 1 cut(s) 825
Bsp1286I GDGCHC 3 cut(s) 485, 628, 829
Bsp1720I GCTNAGC 5 cut(s) 1086, 1119, 1152, 1185, 1506
Bsp68I TCGCGA 1 cut(s) 92
BspACI CCGC 7 cut(s) 33, 52, 69, 72, 117, 830, 1308
BspANI GGCC 7 cut(s) 231, 344, 827, 938, 1270, 1353, 1407
BspFNI CGCG 1 cut(s) 92
BspHI TCATGA 1 cut(s) 543
BspLI GGNNCC 8 cut(s) 250, 343, 778, 827, 828, 909, 972, 1227
BspMAI CTGCAG 2 cut(s) 1279, 1480
BspMI ACCTGC 2 cut(s) 938, 1282
BspPI GGATC 2 cut(s) 963, 1651
BspT107I GGYRCC 3 cut(s) 248, 907, 970
BspTNI GGTCTC 1 cut(s) 1392
BsrDI GCAATG 1 cut(s) 644
BsrFI RCCGGY 1 cut(s) 35
BsrI ACTGG 1 cut(s) 1621
BssAI RCCGGY 1 cut(s) 35
BssECI CCNNGG 2 cut(s) 360, 939
BssNAI GTATAC 1 cut(s) 688
Bst1107I GTATAC 1 cut(s) 688
Bst2UI CCWGG 8 cut(s) 361, 525, 660, 834, 885, 941, 968, 1053
Bst4CI ACNGT 3 cut(s) 44, 336, 537
BstC8I GCNNGC 5 cut(s) 37, 1355, 1409, 1426, 1461
BstF5I GGATG 3 cut(s) 403, 800, 1390
BstFNI CGCG 1 cut(s) 92
BstH2I RGCGCY 1 cut(s) 151
BstHHI GCGC 1 cut(s) 150
BstMAI GTCTC 2 cut(s) 587, 1392
BstMWI GCNNNNNNNGC 8 cut(s) 859, 944, 1404, 1469, 1478, 1552, 1561, 1604
BstNI CCWGG 8 cut(s) 361, 525, 660, 834, 885, 941, 968, 1053
BstSCI CCNGG 9 cut(s) 119, 359, 523, 658, 832, 883, 939, 966, 1051
BstSFI CTRYAG 2 cut(s) 1275, 1476
BstSLI GKGCMC 1 cut(s) 829
BstUI CGCG 1 cut(s) 92
BstV2I GAAGAC 2 cut(s) 15, 69
BstXI CCANNNNNNTGG 2 cut(s) 239, 730
BstZ17I GTATAC 1 cut(s) 688
Bsu36I CCTNAGG 1 cut(s) 987
BsuRI GGCC 7 cut(s) 231, 344, 827, 938, 1270, 1353, 1407
BtsCI GGATG 3 cut(s) 403, 800, 1390
BtsI GCAGTG 2 cut(s) 1003, 1284
BtsIMutI CAGTG 4 cut(s) 49, 754, 1003, 1284
BtuMI TCGCGA 1 cut(s) 92
BveI ACCTGC 2 cut(s) 938, 1282
Cac8I GCNNGC 5 cut(s) 37, 1355, 1409, 1426, 1461
CaiI CAGNNNCTG 4 cut(s) 374, 1235, 1601, 1664
CciI TCATGA 1 cut(s) 543
CfoI GCGC 1 cut(s) 150
Cfr10I RCCGGY 1 cut(s) 35
Cfr13I GGNCC 5 cut(s) 342, 825, 826, 937, 1268
CsiI ACCWGGT 1 cut(s) 966
Csp6I GTAC 7 cut(s) 414, 641, 874, 897, 919, 971, 1003
CviAII CATG 1 cut(s) 544
CviQI GTAC 7 cut(s) 414, 641, 874, 897, 919, 971, 1003
DriI GACNNNNNGTC 1 cut(s) 166
EaeI YGGCCR 1 cut(s) 1351
Eam1105I GACNNNNNGTC 1 cut(s) 166
Ecl136II GAGCTC 1 cut(s) 626
Eco24I GRGCYC 3 cut(s) 485, 628, 829
Eco31I GGTCTC 1 cut(s) 1392
Eco53kI GAGCTC 1 cut(s) 626
Eco57I CTGAAG 1 cut(s) 1623
Eco81I CCTNAGG 1 cut(s) 987
Eco88I CYCGRG 1 cut(s) 153
EcoICRI GAGCTC 1 cut(s) 626
EcoO109I RGGNCCY 1 cut(s) 826
EcoRII CCWGG 8 cut(s) 359, 523, 658, 832, 883, 939, 966, 1051
EcoT38I GRGCYC 3 cut(s) 485, 628, 829
FaeI CATG 1 cut(s) 547
FalI AAGNNNNNCTT 2 cut(s) 363, 395
FatI CATG 1 cut(s) 543
FauI CCCGC 2 cut(s) 76, 837
FbaI TGATCA 3 cut(s) 1105, 1138, 1237
FblI GTMKAC 3 cut(s) 159, 189, 687
FokI GGATG 3 cut(s) 410, 787, 1377
FriOI GRGCYC 3 cut(s) 485, 628, 829
FspBI CTAG 2 cut(s) 1218, 1292
GlaI GCGC 1 cut(s) 149
GsuI CTGGAG 3 cut(s) 546, 906, 1212
HaeII RGCGCY 1 cut(s) 151
HaeIII GGCC 7 cut(s) 231, 344, 827, 938, 1270, 1353, 1407
HapII CCGG 5 cut(s) 26, 36, 121, 905, 935
HhaI GCGC 1 cut(s) 150
Hin1II CATG 1 cut(s) 547
Hin6I GCGC 1 cut(s) 148
HinP1I GCGC 1 cut(s) 148
HincII GTYRAC 3 cut(s) 160, 408, 672
HindII GTYRAC 3 cut(s) 160, 408, 672
HinfI GANTC 6 cut(s) 140, 156, 167, 365, 1318, 1532
HpaII CCGG 5 cut(s) 26, 36, 121, 905, 935
HphI GGTGA 5 cut(s) 121, 602, 674, 745, 1631
Hpy166II GTNNAC 9 cut(s) 160, 190, 216, 408, 672, 688, 736, 876, 899
Hpy188I TCNGA 9 cut(s) 370, 421, 636, 1068, 1143, 1176, 1237, 1395, 1603
Hpy188III TCNNGA 9 cut(s) 91, 107, 352, 544, 601, 621, 774, 989, 1260
Hpy8I GTNNAC 9 cut(s) 160, 190, 216, 408, 672, 688, 736, 876, 899
Hpy99I CGWCG 2 cut(s) 164, 167
HpyAV CCTTC 7 cut(s) 181, 274, 662, 822, 984, 1527, 1628
HpyCH4III ACNGT 3 cut(s) 44, 336, 537
HpyCH4IV ACGT 1 cut(s) 668
HpyF10VI GCNNNNNNNGC 8 cut(s) 859, 944, 1404, 1469, 1478, 1552, 1561, 1604
HpySE526I ACGT 1 cut(s) 668
Hsp92II CATG 1 cut(s) 547
HspAI GCGC 1 cut(s) 148
KpnI GGTACC 1 cut(s) 974
KroI GCCGGC 1 cut(s) 35
KroNI GCCGGC 1 cut(s) 37
Ksp22I TGATCA 3 cut(s) 1105, 1138, 1237
LmnI GCTCC 4 cut(s) 493, 623, 1045, 1231
LweI GCATC 6 cut(s) 463, 507, 1241, 1459, 1490, 1549
MabI ACCWGGT 1 cut(s) 966
MaeI CTAG 2 cut(s) 1218, 1292
MaeII ACGT 1 cut(s) 668
MaeIII GTNAC 6 cut(s) 127, 1145, 1166, 1442, 1533, 1557
MboII GAAGA 4 cut(s) 20, 74, 1320, 1478
MhlI GDGCHC 3 cut(s) 485, 628, 829
MlyI GAGTC 5 cut(s) 149, 165, 176, 1312, 1541
MmeI TCCRAC 2 cut(s) 199, 1679
MreI CGCCGGCG 1 cut(s) 35
MroNI GCCGGC 1 cut(s) 35
MseI TTAA 3 cut(s) 381, 510, 764
MslI CAYNNNNRTG 1 cut(s) 237
MspI CCGG 5 cut(s) 26, 36, 121, 905, 935
MspR9I CCNGG 9 cut(s) 121, 361, 525, 660, 834, 885, 941, 968, 1053
MvaI CCWGG 8 cut(s) 361, 525, 660, 834, 885, 941, 968, 1053
MvnI CGCG 1 cut(s) 92
MwoI GCNNNNNNNGC 8 cut(s) 859, 944, 1404, 1469, 1478, 1552, 1561, 1604
NaeI GCCGGC 1 cut(s) 37
NciI CCSGG 1 cut(s) 121
NgoMIV GCCGGC 1 cut(s) 35
NlaIII CATG 1 cut(s) 547
NlaIV GGNNCC 8 cut(s) 250, 343, 778, 827, 828, 909, 972, 1227
NmeAIII GCCGAG 1 cut(s) 163
NmuCI GTSAC 3 cut(s) 127, 1533, 1557
NruI TCGCGA 1 cut(s) 92
PagI TCATGA 1 cut(s) 543
PaqCI CACCTGC 1 cut(s) 1282
PdiI GCCGGC 1 cut(s) 37
PfeI GAWTC 1 cut(s) 365
PflMI CCANNNNNTGG 2 cut(s) 1052, 1202
PleI GAGTC 5 cut(s) 148, 164, 175, 1312, 1540
PpsI GAGTC 5 cut(s) 148, 164, 175, 1312, 1540
Psp124BI GAGCTC 1 cut(s) 628
Psp6I CCWGG 8 cut(s) 359, 523, 658, 832, 883, 939, 966, 1051
PspGI CCWGG 8 cut(s) 359, 523, 658, 832, 883, 939, 966, 1051
PspN4I GGNNCC 8 cut(s) 250, 343, 778, 827, 828, 909, 972, 1227
PspOMI GGGCCC 1 cut(s) 825
PspPI GGNCC 5 cut(s) 342, 825, 826, 937, 1268
PstI CTGCAG 2 cut(s) 1279, 1480
PstNI CAGNNNCTG 4 cut(s) 374, 1235, 1601, 1664
RruI TCGCGA 1 cut(s) 92
RsaI GTAC 7 cut(s) 415, 642, 875, 898, 920, 972, 1004
RsaNI GTAC 7 cut(s) 414, 641, 874, 897, 919, 971, 1003
RseI CAYNNNNRTG 1 cut(s) 237
SacI GAGCTC 1 cut(s) 628
SalI GTCGAC 1 cut(s) 158
SaqAI TTAA 3 cut(s) 381, 510, 764
Sau96I GGNCC 5 cut(s) 342, 825, 826, 937, 1268
SchI GAGTC 5 cut(s) 149, 165, 176, 1312, 1541
ScrFI CCNGG 9 cut(s) 121, 361, 525, 660, 834, 885, 941, 968, 1053
SduI GDGCHC 3 cut(s) 485, 628, 829
SexAI ACCWGGT 1 cut(s) 966
SfaNI GCATC 6 cut(s) 463, 507, 1241, 1459, 1490, 1549
SfcI CTRYAG 2 cut(s) 1275, 1476
SgrAI CRCCGGYG 1 cut(s) 35
SmiMI CAYNNNNRTG 1 cut(s) 237
SmlI CTYRAG 1 cut(s) 1419
SmoI CTYRAG 1 cut(s) 1419
SsiI CCGC 7 cut(s) 33, 52, 69, 72, 117, 830, 1308
SspMI CTAG 2 cut(s) 1218, 1292
SstI GAGCTC 1 cut(s) 628
StyD4I CCNGG 9 cut(s) 119, 359, 523, 658, 832, 883, 939, 966, 1051
TaaI ACNGT 3 cut(s) 44, 336, 537
TaiI ACGT 1 cut(s) 671
TaqI TCGA 4 cut(s) 19, 143, 159, 515
TauI GCSGC 2 cut(s) 74, 119
TfiI GAWTC 1 cut(s) 365
Tru1I TTAA 3 cut(s) 381, 510, 764
Tru9I TTAA 3 cut(s) 381, 510, 764
TscAI CASTG 4 cut(s) 49, 754, 1003, 1284
TseFI GTSAC 3 cut(s) 127, 1533, 1557
Tsp45I GTSAC 3 cut(s) 127, 1533, 1557
TspDTI ATGAA 1 cut(s) 560
TspGWI ACGGA 3 cut(s) 20, 1461, 1503
TspRI CASTG 4 cut(s) 49, 754, 1003, 1284
Van91I CCANNNNNTGG 2 cut(s) 1052, 1202
XmiI GTMKAC 3 cut(s) 159, 189, 687
XspI CTAG 2 cut(s) 1218, 1292
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.