pycom10g07160

Far upstream element-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0007483
Physical Location & Seq
Forward (+)
8357761 .. 8360575
2815 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 822 bp
ATGCAAAGCAAGTCAGGAGCTCGTATTCAGGTGGTACCATTGCATCCTCCTCCTGGTGATATGTCAACTGAAAGATCAGTACATATAAATGGAACGGCAGAGCAAATTGAAGCAGCCAAAGAATTGGTCAATGAAGTAATCAGTGGGAAGCATATGGTAAACTCCTCTGGAACGAATAGTTATGTCCAGCAGTCTTTCCCCCCTGGTAGTTGGGCCCCACCAGGACAGCAACAGCAGCCGCATTATGGGTACGCACAACCAGGAAGTTATGCACCTCCTGCTTCATACTACGGCAACTATCCTACACAGGTAGCAGGTTGGGATCAGTCAAACCAATTAGCCACCTCTCAACCACCTCAGGATGGTAGTGGATACAATTACTATGGACAACAACCTCAAAATCCTAGCTACAACTACAATCAGACACCTCCCGTTGCCAGCCATGGTTATGATCGATCAAGGGGTATGCTCAGCAGCCACCAAGTTATGGAGGCCAAGCTCCAATATCTGATTACCAGCAACAATATGCAACTTCAGGGTATGGACCACCTGCGGTGCCATCCATTGGGGATGCAACTGCTTCCCAAAGTACCCAGCCTTCAGCTGCTTATCAAGTTCCTTACAGCCAGCCAATGGCAAACCCTCAAGCTGGGTATTGGACTCATCCAGGCAGCACAGGCCACCAACCACATCCTGGTTATTACCAAGCAGGTTATGGAGGGCAGCAGGGGGTCGAAGACCCTTGTGCCGCATCTCAGCCTGCAGCATATGGACACGGTGAGCACCATCAGCCAGACCCTTCACATTATGCCCCAGCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000375 GO:0001505 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006417 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010586 GO:0010604 GO:0010605 GO:0010608 GO:0010629 GO:0010984 GO:0010985 GO:0010988 GO:0010989 GO:0016070 GO:0016071 GO:0017091 GO:0017148 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031329 GO:0031331 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0034097 GO:0034248 GO:0034249 GO:0034641 GO:0034660 GO:0035925 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043487 GO:0043488 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045019 GO:0045428 GO:0045935 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050779 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051239 GO:0051241 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0061013 GO:0061014 GO:0061157 GO:0061158 GO:0065007 GO:0065008 GO:0070013 GO:0070887 GO:0071310 GO:0071345 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1903311 GO:1903313 GO:1903426 GO:1903427 GO:1904406 GO:2000112 GO:2000113 GO:2000377 GO:2000378
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KH_1

Protein Analysis

274

Amino Acids

30.0

Weight (kDa)

8.55

Isoelectric Point (pI)

58.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KH_1 PF00013 1 - 45 1.2e-07 KH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 558
Acc36I ACCTGC 3 cut(s) 305, 558, 700
Acc65I GGTACC 1 cut(s) 34
AccB1I GGYRCC 2 cut(s) 34, 555
AccB7I CCANNNNNTGG 4 cut(s) 487, 565, 633, 694
AciI CCGC 3 cut(s) 239, 553, 749
AclWI GGATC 1 cut(s) 330
AcuI CTGAAG 2 cut(s) 518, 584
AfaI GTAC 4 cut(s) 36, 81, 251, 591
AfiI CCNNNNNNNGG 8 cut(s) 53, 245, 362, 487, 565, 633, 649, 694
AgsI TTSAA 1 cut(s) 110
AjnI CCWGG 6 cut(s) 52, 202, 220, 259, 666, 693
AluBI AGCT 5 cut(s) 20, 408, 499, 604, 649
AluI AGCT 5 cut(s) 20, 408, 499, 604, 649
Alw21I GWGCWC 2 cut(s) 22, 785
AlwI GGATC 1 cut(s) 330
AoxI GGCC 3 cut(s) 213, 492, 678
ApaI GGGCCC 1 cut(s) 217
ApeKI GCWGC 7 cut(s) 113, 235, 474, 604, 671, 723, 763
ArsI GACNNNNNNTTYG 2 cut(s) 111, 143
Asp718I GGTACC 1 cut(s) 34
AspS9I GGNCC 3 cut(s) 213, 214, 544
AsuHPI GGTGA 2 cut(s) 68, 790
AvaII GGWCC 1 cut(s) 544
AxyI CCTNAGG 1 cut(s) 357
BaeGI GKGCMC 1 cut(s) 217
BanI GGYRCC 2 cut(s) 34, 555
BanII GRGCYC 2 cut(s) 22, 217
BarI GAAGNNNNNNTAC 2 cut(s) 582, 614
BbsI GAAGAC 1 cut(s) 743
Bbv12I GWGCWC 2 cut(s) 22, 785
BbvI GCAGC 7 cut(s) 125, 247, 486, 591, 683, 735, 775
BccI CCATC 3 cut(s) 356, 567, 794
BceAI ACGGC 2 cut(s) 111, 307
BciT130I CCWGG 6 cut(s) 54, 204, 222, 261, 668, 695
BciVI GTATCC 1 cut(s) 365
BfaI CTAG 1 cut(s) 405
BfmI CTRYAG 1 cut(s) 761
BfuAI ACCTGC 3 cut(s) 305, 558, 700
BfuI GTATCC 1 cut(s) 365
BisI GCNGC 9 cut(s) 114, 236, 239, 475, 605, 672, 724, 749, 764
BlpI GCTNAGC 1 cut(s) 470
BlsI GCNGC 9 cut(s) 115, 237, 240, 476, 606, 673, 725, 750, 765
Bme1390I CCNGG 6 cut(s) 54, 204, 222, 261, 668, 695
Bme18I GGWCC 1 cut(s) 544
BmgT120I GGNCC 3 cut(s) 213, 214, 544
BmiI GGNNCC 4 cut(s) 36, 215, 216, 557
BmrFI CCNGG 6 cut(s) 54, 204, 222, 261, 668, 695
BmsI GCATC 3 cut(s) 52, 561, 760
BpiI GAAGAC 1 cut(s) 743
Bpu1102I GCTNAGC 1 cut(s) 470
BpuEI CTTGAG 1 cut(s) 629
Bsa29I ATCGAT 1 cut(s) 454
BsaJI CCNNGG 2 cut(s) 202, 442
Bsc4I CCNNNNNNNGG 8 cut(s) 53, 245, 362, 487, 565, 633, 649, 694
Bse21I CCTNAGG 1 cut(s) 357
Bse3DI GCAATG 1 cut(s) 38
BseBI CCWGG 6 cut(s) 54, 204, 222, 261, 668, 695
BseCI ATCGAT 1 cut(s) 454
BseDI CCNNGG 2 cut(s) 202, 442
BseGI GGATG 6 cut(s) 43, 367, 559, 576, 663, 690
BseLI CCNNNNNNNGG 8 cut(s) 53, 245, 362, 487, 565, 633, 649, 694
BseMI GCAATG 1 cut(s) 38
BseMII CTCAG 3 cut(s) 371, 484, 769
BseRI GAGGAG 2 cut(s) 39, 154
BseSI GKGCMC 1 cut(s) 217
BseXI GCAGC 7 cut(s) 125, 247, 486, 591, 683, 735, 775
BseYI CCCAGC 3 cut(s) 593, 649, 813
BshFI GGCC 3 cut(s) 215, 494, 680
BshNI GGYRCC 2 cut(s) 34, 555
BshVI ATCGAT 1 cut(s) 454
BsiHKAI GWGCWC 2 cut(s) 22, 785
BslI CCNNNNNNNGG 8 cut(s) 53, 245, 362, 487, 565, 633, 649, 694
BsnI GGCC 3 cut(s) 215, 494, 680
Bsp120I GGGCCC 1 cut(s) 213
Bsp1286I GDGCHC 3 cut(s) 22, 217, 785
Bsp143I GATC 4 cut(s) 74, 322, 451, 455
Bsp1720I GCTNAGC 1 cut(s) 470
Bsp19I CCATGG 1 cut(s) 442
BspACI CCGC 3 cut(s) 239, 553, 749
BspANI GGCC 3 cut(s) 215, 494, 680
BspCNI CTCAG 3 cut(s) 370, 483, 768
BspDI ATCGAT 1 cut(s) 454
BspLI GGNNCC 4 cut(s) 36, 215, 216, 557
BspMAI CTGCAG 1 cut(s) 765
BspMI ACCTGC 3 cut(s) 305, 558, 700
BspPI GGATC 1 cut(s) 330
BspT107I GGYRCC 2 cut(s) 34, 555
BsrDI GCAATG 1 cut(s) 38
BssECI CCNNGG 2 cut(s) 202, 442
BssMI GATC 4 cut(s) 74, 322, 451, 455
BssT1I CCWWGG 1 cut(s) 442
Bst2UI CCWGG 6 cut(s) 54, 204, 222, 261, 668, 695
Bst4CI ACNGT 1 cut(s) 778
BstAPI GCANNNNNTGC 1 cut(s) 278
BstC8I GCNNGC 3 cut(s) 439, 628, 761
BstDEI CTNAG 3 cut(s) 357, 470, 755
BstDSI CCRYGG 1 cut(s) 442
BstF5I GGATG 6 cut(s) 43, 367, 559, 576, 663, 690
BstKTI GATC 4 cut(s) 77, 325, 454, 458
BstMBI GATC 4 cut(s) 74, 322, 451, 455
BstMWI GCNNNNNNNGC 4 cut(s) 235, 278, 677, 789
BstNI CCWGG 6 cut(s) 54, 204, 222, 261, 668, 695
BstSCI CCNGG 6 cut(s) 52, 202, 220, 259, 666, 693
BstSFI CTRYAG 1 cut(s) 761
BstSLI GKGCMC 1 cut(s) 217
BstV1I GCAGC 7 cut(s) 125, 247, 486, 591, 683, 735, 775
BstV2I GAAGAC 1 cut(s) 743
BstXI CCANNNNNNTGG 1 cut(s) 124
Bsu15I ATCGAT 1 cut(s) 454
Bsu36I CCTNAGG 1 cut(s) 357
BsuI GTATCC 1 cut(s) 365
BsuRI GGCC 3 cut(s) 215, 494, 680
BsuTUI ATCGAT 1 cut(s) 454
BtgI CCRYGG 1 cut(s) 442
BtsCI GGATG 6 cut(s) 43, 367, 559, 576, 663, 690
BtsIMutI CAGTG 1 cut(s) 148
BveI ACCTGC 3 cut(s) 305, 558, 700
Cac8I GCNNGC 3 cut(s) 439, 628, 761
Cfr13I GGNCC 3 cut(s) 213, 214, 544
ClaI ATCGAT 1 cut(s) 454
Csp6I GTAC 4 cut(s) 35, 80, 250, 590
CviAII CATG 1 cut(s) 443
CviQI GTAC 4 cut(s) 35, 80, 250, 590
DdeI CTNAG 3 cut(s) 357, 470, 755
DpnI GATC 4 cut(s) 76, 324, 453, 457
DpnII GATC 4 cut(s) 74, 322, 451, 455
Ecl136II GAGCTC 1 cut(s) 20
Eco130I CCWWGG 1 cut(s) 442
Eco24I GRGCYC 2 cut(s) 22, 217
Eco47I GGWCC 1 cut(s) 544
Eco53kI GAGCTC 1 cut(s) 20
Eco57I CTGAAG 2 cut(s) 518, 584
Eco81I CCTNAGG 1 cut(s) 357
EcoICRI GAGCTC 1 cut(s) 20
EcoO109I RGGNCCY 1 cut(s) 214
EcoRII CCWGG 6 cut(s) 52, 202, 220, 259, 666, 693
EcoT14I CCWWGG 1 cut(s) 442
EcoT38I GRGCYC 2 cut(s) 22, 217
ErhI CCWWGG 1 cut(s) 442
FaeI CATG 1 cut(s) 446
FatI CATG 1 cut(s) 442
FauNDI CATATG 2 cut(s) 153, 768
Fnu4HI GCNGC 9 cut(s) 114, 236, 239, 475, 605, 672, 724, 749, 764
FokI GGATG 6 cut(s) 30, 374, 546, 583, 650, 677
FriOI GRGCYC 2 cut(s) 22, 217
Fsp4HI GCNGC 9 cut(s) 114, 236, 239, 475, 605, 672, 724, 749, 764
FspBI CTAG 1 cut(s) 405
GluI GCNGC 9 cut(s) 114, 236, 239, 475, 605, 672, 724, 749, 764
GsaI CCCAGC 3 cut(s) 597, 653, 817
HaeIII GGCC 3 cut(s) 215, 494, 680
Hin1II CATG 1 cut(s) 446
HincII GTYRAC 1 cut(s) 66
HindII GTYRAC 1 cut(s) 66
HinfI GANTC 1 cut(s) 660
HphI GGTGA 2 cut(s) 68, 790
Hpy166II GTNNAC 2 cut(s) 66, 160
Hpy188I TCNGA 2 cut(s) 423, 510
Hpy188III TCNNGA 3 cut(s) 15, 168, 359
Hpy8I GTNNAC 2 cut(s) 66, 160
HpyAV CCTTC 2 cut(s) 608, 809
HpyCH4III ACNGT 1 cut(s) 778
HpyCH4V TGCA 6 cut(s) 4, 43, 272, 529, 574, 763
HpyF10VI GCNNNNNNNGC 4 cut(s) 235, 278, 677, 789
HpyF3I CTNAG 3 cut(s) 357, 470, 755
Hsp92II CATG 1 cut(s) 446
KpnI GGTACC 1 cut(s) 38
Kzo9I GATC 4 cut(s) 74, 322, 451, 455
LmnI GCTCC 2 cut(s) 17, 504
Lsp1109I GCAGC 7 cut(s) 125, 247, 486, 591, 683, 735, 775
LweI GCATC 3 cut(s) 52, 561, 760
MaeI CTAG 1 cut(s) 405
MalI GATC 4 cut(s) 76, 324, 453, 457
MboI GATC 4 cut(s) 74, 322, 451, 455
MboII GAAGA 1 cut(s) 748
MhlI GDGCHC 3 cut(s) 22, 217, 785
MluCI AATT 4 cut(s) 105, 122, 335, 376
MlyI GAGTC 1 cut(s) 654
MslI CAYNNNNRTG 2 cut(s) 87, 447
MspA1I CMGCKG 1 cut(s) 604
MspR9I CCNGG 6 cut(s) 54, 204, 222, 261, 668, 695
MvaI CCWGG 6 cut(s) 54, 204, 222, 261, 668, 695
MwoI GCNNNNNNNGC 4 cut(s) 235, 278, 677, 789
NcoI CCATGG 1 cut(s) 442
NdeI CATATG 2 cut(s) 153, 768
NdeII GATC 4 cut(s) 74, 322, 451, 455
NlaIII CATG 1 cut(s) 446
NlaIV GGNNCC 4 cut(s) 36, 215, 216, 557
PaqCI CACCTGC 1 cut(s) 558
PflMI CCANNNNNTGG 4 cut(s) 487, 565, 633, 694
PkrI GCNGC 9 cut(s) 115, 237, 240, 476, 606, 673, 725, 750, 765
PleI GAGTC 1 cut(s) 654
PpsI GAGTC 1 cut(s) 654
Psp124BI GAGCTC 1 cut(s) 22
Psp6I CCWGG 6 cut(s) 52, 202, 220, 259, 666, 693
PspFI CCCAGC 3 cut(s) 593, 649, 813
PspGI CCWGG 6 cut(s) 52, 202, 220, 259, 666, 693
PspN4I GGNNCC 4 cut(s) 36, 215, 216, 557
PspOMI GGGCCC 1 cut(s) 213
PspPI GGNCC 3 cut(s) 213, 214, 544
PstI CTGCAG 1 cut(s) 765
PvuII CAGCTG 1 cut(s) 604
RsaI GTAC 4 cut(s) 36, 81, 251, 591
RsaNI GTAC 4 cut(s) 35, 80, 250, 590
RseI CAYNNNNRTG 2 cut(s) 87, 447
SacI GAGCTC 1 cut(s) 22
SatI GCNGC 9 cut(s) 114, 236, 239, 475, 605, 672, 724, 749, 764
Sau3AI GATC 4 cut(s) 74, 322, 451, 455
Sau96I GGNCC 3 cut(s) 213, 214, 544
SchI GAGTC 1 cut(s) 654
ScrFI CCNGG 6 cut(s) 54, 204, 222, 261, 668, 695
SduI GDGCHC 3 cut(s) 22, 217, 785
SfaNI GCATC 3 cut(s) 52, 561, 760
SfcI CTRYAG 1 cut(s) 761
SinI GGWCC 1 cut(s) 544
SmiMI CAYNNNNRTG 2 cut(s) 87, 447
SmlI CTYRAG 1 cut(s) 644
SmoI CTYRAG 1 cut(s) 644
Sse9I AATT 4 cut(s) 105, 122, 335, 376
SsiI CCGC 3 cut(s) 239, 553, 749
SspMI CTAG 1 cut(s) 405
SstI GAGCTC 1 cut(s) 22
StyD4I CCNGG 6 cut(s) 52, 202, 220, 259, 666, 693
StyI CCWWGG 1 cut(s) 442
TaaI ACNGT 1 cut(s) 778
TaqI TCGA 2 cut(s) 454, 734
TasI AATT 4 cut(s) 105, 122, 335, 376
TatI WGTACW 1 cut(s) 79
TauI GCSGC 2 cut(s) 241, 751
TscAI CASTG 1 cut(s) 148
TseI GCWGC 7 cut(s) 113, 235, 474, 604, 671, 723, 763
TspDTI ATGAA 2 cut(s) 147, 273
TspRI CASTG 1 cut(s) 148
Van91I CCANNNNNTGG 4 cut(s) 487, 565, 633, 694
VpaK11BI GGWCC 1 cut(s) 544
XcmI CCANNNNNNNNNTGG 2 cut(s) 691, 712
XspI CTAG 1 cut(s) 405
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.