pycom10g07290

La-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0005397
Physical Location & Seq
Forward (+)
8535143 .. 8538037
2895 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1179 bp
ATGGCACAAGCACAACCACCTGGGGAAAAGCCCCAAGAGGTCCCAGATATGGAGGTGAAAGAAAACCCAAGAAGTCCATCCTTCACATTTAATGCACAGGCACCTGAATTTGTGCCAAGATCACATGCCCAGATGCCCATTTCTGGTTATTTCTATCCCTGCTTTCACTTTCTTGGTGACAGTACTGCTTCCCCTGATTGGTTTTACATTGGGGACCAAGAATTGCCTCCTTACCTGATCTCCAATAATCCCAATATCAATCCGCTTTCCAATCGGTCCAAGAACGCGCTCCCAGATGATCTTCAACAGAAGATCATTAAGCAGGTGGAGTACCAGTTCAGTGACATGAGTCTGCTGGCAAATGAATCCTTAGCGAAACACATAAGTAAAGATCCCGAAGGATTTGTTCCAATATCTGTTGTTGCCTCCACCAAGAAAATGAAGTCACTTACTAGTAACAACCATATGCTCACGCAAGCACTGCGGTCTTCTTTAAAGCTTGTTGTAAGTGAGGATGGCAAGAAGGTTAGACGTAAGCGTCCTTTTACTGAAAAGGACAAAGAGGAATTGCAGGTAAAAGCAGATTCTCGCACCGTTGTGGCAGAGAATTTGCCTGAAGATCACTCTCATCAAAACCTTGAGAAGATATTCAGTGTGGTTGGAAGTGTGAAAACTATCCGAATATGCCATCCCCACGAATCCAATTCTTCCCGCTCCAAAGGCGATTTCATTATCAGCAACAAGGTTGATAAGTTGAGCGATGAAAGGAACTGGAGAAAAGGGCTCCGAGTAAGGATGCTGATCAGATGCTCGCCAAAGTCTGTTTTGAAGAGCAGAAAGTCTGATTTCGATGGCATTTTAGAGGATGAAGAACCACCGTATGATTGCGCAGTAGAAACTTCTCACCCAATCAACCCTGAATTGGTCATTGATAGTCCTAATGTTGAAGAAAACTCCGCATTGTCCAAGAAAGGATTGGCCTGGGGGCGTGGTAAGGGACGAGGACGCGGGCAGAGCCAGAGCGGCCGTGGCCTGATTACCCCGTCTCCGCTATCAAGCAGCACCATCCAGTGTGAAGCATCTGCAAAACTGAATTCCAAAGGACCAAGAATGCCGGATGGGACTCGAGGCTTCACCATGGGAAGAGGCAAGCCAGTAAGCGCCGTGAATTCGCCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
La PAM2 RRM_1

Protein Analysis

393

Amino Acids

43.52

Weight (kDa)

9.1

Isoelectric Point (pI)

53.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
La PF05383 105 - 163 1e-18 La domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 313
AasI GACNNNNNNGTC 1 cut(s) 537
Acc16I TGCGCA 1 cut(s) 889
Acc36I ACCTGC 2 cut(s) 313, 562
AccB1I GGYRCC 1 cut(s) 100
AccBSI CCGCTC 2 cut(s) 714, 1023
AccII CGCG 2 cut(s) 287, 1008
AciI CCGC 7 cut(s) 263, 484, 712, 957, 1008, 1023, 1049
AclWI GGATC 1 cut(s) 386
AcoI YGGCCR 1 cut(s) 1024
AcsI RAATTY 4 cut(s) 107, 607, 1093, 1168
AcuI CTGAAG 1 cut(s) 636
AfaI GTAC 2 cut(s) 184, 332
AfiI CCNNNNNNNGG 4 cut(s) 49, 143, 198, 922
AgsI TTSAA 3 cut(s) 305, 829, 947
AhlI ACTAGT 1 cut(s) 452
AjnI CCWGG 2 cut(s) 19, 980
AjuI GAANNNNNNNTTGG 2 cut(s) 710, 742
AleI CACNNNNGTG 1 cut(s) 596
AloI GAACNNNNNNTCC 2 cut(s) 320, 352
AluBI AGCT 1 cut(s) 499
AluI AGCT 1 cut(s) 499
Alw26I GTCTC 1 cut(s) 1050
AlwI GGATC 1 cut(s) 386
Ama87I CYCGRG 1 cut(s) 1125
AoxI GGCC 3 cut(s) 978, 1024, 1030
ApeKI GCWGC 1 cut(s) 1059
ApoI RAATTY 4 cut(s) 107, 607, 1093, 1168
Asp700I GAANNNNTTC 1 cut(s) 647
AspLEI GCGC 3 cut(s) 289, 890, 1163
AspS9I GGNCC 4 cut(s) 40, 214, 276, 1103
AsuHPI GGTGA 4 cut(s) 67, 188, 896, 1126
AvaI CYCGRG 1 cut(s) 1125
AvaII GGWCC 4 cut(s) 40, 214, 276, 1103
BanI GGYRCC 1 cut(s) 100
BanII GRGCYC 1 cut(s) 786
BbsI GAAGAC 1 cut(s) 480
BbvI GCAGC 1 cut(s) 1071
BccI CCATC 6 cut(s) 85, 509, 696, 845, 1073, 1112
BceAI ACGGC 3 cut(s) 1011, 1148, 1159
BciT130I CCWGG 2 cut(s) 21, 982
BclI TGATCA 1 cut(s) 801
BcoDI GTCTC 1 cut(s) 1050
BcuI ACTAGT 1 cut(s) 452
BfaI CTAG 1 cut(s) 453
BfoI RGCGCY 1 cut(s) 1164
BfuAI ACCTGC 2 cut(s) 313, 562
BglI GCCNNNNNGGC 1 cut(s) 1023
BisI GCNGC 2 cut(s) 1024, 1060
BlsI GCNGC 2 cut(s) 1025, 1061
BmcAI AGTACT 1 cut(s) 184
Bme1390I CCNGG 2 cut(s) 21, 982
Bme18I GGWCC 4 cut(s) 40, 214, 276, 1103
BmeT110I CYCGRG 1 cut(s) 1125
BmgT120I GGNCC 4 cut(s) 40, 214, 276, 1103
BmiI GGNNCC 4 cut(s) 42, 102, 215, 785
BmrFI CCNGG 2 cut(s) 21, 982
BmsI GCATC 4 cut(s) 123, 786, 797, 1088
BoxI GACNNNNGTC 1 cut(s) 348
BpiI GAAGAC 1 cut(s) 480
BpmI CTGGAG 1 cut(s) 793
Bpu10I CCTNAGC 1 cut(s) 370
BpuEI CTTGAG 1 cut(s) 659
BsaBI GATNNNNATC 1 cut(s) 800
BsaJI CCNNGG 4 cut(s) 20, 981, 1027, 1137
BsaXI ACNNNNNCTCC 6 cut(s) 224, 254, 320, 350, 1030, 1060
Bsc4I CCNNNNNNNGG 4 cut(s) 49, 143, 198, 922
Bse1I ACTGG 4 cut(s) 334, 776, 1069, 1154
Bse8I GATNNNNATC 1 cut(s) 800
BseBI CCWGG 2 cut(s) 21, 982
BseDI CCNNGG 4 cut(s) 20, 981, 1027, 1137
BseGI GGATG 7 cut(s) 77, 520, 688, 801, 871, 1065, 1123
BseJI GATNNNNATC 1 cut(s) 800
BseLI CCNNNNNNNGG 4 cut(s) 49, 143, 198, 922
BseNI ACTGG 4 cut(s) 334, 776, 1069, 1154
BseX3I CGGCCG 1 cut(s) 1024
BseXI GCAGC 1 cut(s) 1071
Bsh1236I CGCG 2 cut(s) 287, 1008
Bsh1285I CGRYCG 1 cut(s) 1027
BshFI GGCC 3 cut(s) 980, 1026, 1032
BshNI GGYRCC 1 cut(s) 100
BsiEI CGRYCG 1 cut(s) 1027
BsiHKCI CYCGRG 1 cut(s) 1125
BsiSI CCGG 1 cut(s) 1115
BslFI GGGAC 4 cut(s) 26, 227, 1011, 1135
BslI CCNNNNNNNGG 4 cut(s) 49, 143, 198, 922
BsmAI GTCTC 1 cut(s) 1050
BsmBI CGTCTC 1 cut(s) 1050
BsmFI GGGAC 4 cut(s) 26, 227, 1011, 1135
BsmI GAATGC 1 cut(s) 1116
BsnI GGCC 3 cut(s) 980, 1026, 1032
BsoBI CYCGRG 1 cut(s) 1125
Bsp1286I GDGCHC 1 cut(s) 786
Bsp143I GATC 7 cut(s) 119, 237, 298, 312, 391, 619, 801
Bsp19I CCATGG 1 cut(s) 1137
BspACI CCGC 7 cut(s) 263, 484, 712, 957, 1008, 1023, 1049
BspANI GGCC 3 cut(s) 980, 1026, 1032
BspFNI CGCG 2 cut(s) 287, 1008
BspLI GGNNCC 4 cut(s) 42, 102, 215, 785
BspMI ACCTGC 2 cut(s) 313, 562
BspPI GGATC 1 cut(s) 386
BspQI GCTCTTC 1 cut(s) 824
BspT107I GGYRCC 1 cut(s) 100
BsrBI CCGCTC 2 cut(s) 714, 1023
BsrI ACTGG 4 cut(s) 334, 776, 1069, 1154
BssECI CCNNGG 4 cut(s) 20, 981, 1027, 1137
BssMI GATC 7 cut(s) 119, 237, 298, 312, 391, 619, 801
BssT1I CCWWGG 1 cut(s) 1137
Bst2UI CCWGG 2 cut(s) 21, 982
Bst4CI ACNGT 3 cut(s) 182, 595, 879
Bst6I CTCTTC 2 cut(s) 824, 1138
BstAPI GCANNNNNTGC 1 cut(s) 481
BstC8I GCNNGC 5 cut(s) 357, 477, 812, 1010, 1151
BstDEI CTNAG 1 cut(s) 370
BstDSI CCRYGG 2 cut(s) 1027, 1137
BstF5I GGATG 7 cut(s) 77, 520, 688, 801, 871, 1065, 1123
BstFNI CGCG 2 cut(s) 287, 1008
BstH2I RGCGCY 1 cut(s) 1164
BstHHI GCGC 3 cut(s) 289, 890, 1163
BstKTI GATC 7 cut(s) 122, 240, 301, 315, 394, 622, 804
BstMAI GTCTC 1 cut(s) 1050
BstMBI GATC 7 cut(s) 119, 237, 298, 312, 391, 619, 801
BstMCI CGRYCG 1 cut(s) 1027
BstMWI GCNNNNNNNGC 5 cut(s) 481, 720, 1014, 1023, 1029
BstNI CCWGG 2 cut(s) 21, 982
BstNSI RCATGY 1 cut(s) 128
BstPAI GACNNNNGTC 1 cut(s) 348
BstSCI CCNGG 2 cut(s) 19, 980
BstUI CGCG 2 cut(s) 287, 1008
BstV1I GCAGC 1 cut(s) 1071
BstV2I GAAGAC 1 cut(s) 480
BstX2I RGATCY 1 cut(s) 391
BstYI RGATCY 1 cut(s) 391
BstZI CGGCCG 1 cut(s) 1024
BsuRI GGCC 3 cut(s) 980, 1026, 1032
BtgI CCRYGG 2 cut(s) 1027, 1137
BtgZI GCGATG 1 cut(s) 774
BtsCI GGATG 7 cut(s) 77, 520, 688, 801, 871, 1065, 1123
BtsI GCAGTG 1 cut(s) 479
BtsIMutI CAGTG 4 cut(s) 346, 479, 658, 1076
BveI ACCTGC 2 cut(s) 313, 562
Cac8I GCNNGC 5 cut(s) 357, 477, 812, 1010, 1151
CfoI GCGC 3 cut(s) 289, 890, 1163
Cfr13I GGNCC 4 cut(s) 40, 214, 276, 1103
CseI GACGC 2 cut(s) 527, 1014
Csp6I GTAC 2 cut(s) 183, 331
CviAII CATG 3 cut(s) 125, 346, 1138
CviJI RGCY 9 cut(s) 31, 499, 784, 980, 1017, 1026, 1032, 1131, 1153
CviKI_1 RGCY 9 cut(s) 31, 499, 784, 980, 1017, 1026, 1032, 1131, 1153
CviQI GTAC 2 cut(s) 183, 331
DdeI CTNAG 1 cut(s) 370
DpnI GATC 7 cut(s) 121, 239, 300, 314, 393, 621, 803
DpnII GATC 7 cut(s) 119, 237, 298, 312, 391, 619, 801
DraI TTTAAA 1 cut(s) 495
DrdI GACNNNNNNGTC 1 cut(s) 537
DseDI GACNNNNNNGTC 1 cut(s) 537
EaeI YGGCCR 1 cut(s) 1024
EagI CGGCCG 1 cut(s) 1024
Eam1104I CTCTTC 2 cut(s) 824, 1138
EarI CTCTTC 2 cut(s) 824, 1138
EclXI CGGCCG 1 cut(s) 1024
Eco130I CCWWGG 1 cut(s) 1137
Eco24I GRGCYC 1 cut(s) 786
Eco47I GGWCC 4 cut(s) 40, 214, 276, 1103
Eco52I CGGCCG 1 cut(s) 1024
Eco57I CTGAAG 1 cut(s) 636
Eco88I CYCGRG 1 cut(s) 1125
EcoO109I RGGNCCY 1 cut(s) 40
EcoRI GAATTC 2 cut(s) 1093, 1168
EcoRII CCWGG 2 cut(s) 19, 980
EcoT14I CCWWGG 1 cut(s) 1137
EcoT38I GRGCYC 1 cut(s) 786
ErhI CCWWGG 1 cut(s) 1137
Esp3I CGTCTC 1 cut(s) 1050
FaeI CATG 3 cut(s) 128, 349, 1141
FaiI YATR 9 cut(s) 50, 126, 347, 383, 465, 467, 685, 882, 1139
FaqI GGGAC 4 cut(s) 26, 227, 1011, 1135
FatI CATG 3 cut(s) 124, 345, 1137
FauI CCCGC 2 cut(s) 719, 1001
FauNDI CATATG 1 cut(s) 465
FbaI TGATCA 1 cut(s) 801
Fnu4HI GCNGC 2 cut(s) 1024, 1060
FokI GGATG 7 cut(s) 64, 527, 675, 808, 878, 1052, 1130
FriOI GRGCYC 1 cut(s) 786
Fsp4HI GCNGC 2 cut(s) 1024, 1060
FspBI CTAG 1 cut(s) 453
FspI TGCGCA 1 cut(s) 889
GlaI GCGC 3 cut(s) 288, 889, 1162
GluI GCNGC 2 cut(s) 1024, 1060
GsuI CTGGAG 1 cut(s) 793
HaeII RGCGCY 1 cut(s) 1164
HaeIII GGCC 3 cut(s) 980, 1026, 1032
HapII CCGG 1 cut(s) 1115
HgaI GACGC 2 cut(s) 527, 1014
HhaI GCGC 3 cut(s) 289, 890, 1163
Hin1II CATG 3 cut(s) 128, 349, 1141
Hin6I GCGC 3 cut(s) 287, 888, 1161
HinP1I GCGC 3 cut(s) 287, 888, 1161
HindIII AAGCTT 1 cut(s) 497
HinfI GANTC 5 cut(s) 349, 365, 584, 698, 1123
HpaII CCGG 1 cut(s) 1115
HphI GGTGA 4 cut(s) 67, 188, 896, 1126
Hpy188I TCNGA 4 cut(s) 680, 788, 806, 844
Hpy188III TCNNGA 1 cut(s) 395
HpyAV CCTTC 3 cut(s) 91, 392, 517
HpyCH4III ACNGT 3 cut(s) 182, 595, 879
HpyCH4IV ACGT 1 cut(s) 532
HpyCH4V TGCA 3 cut(s) 95, 571, 1085
HpyF10VI GCNNNNNNNGC 5 cut(s) 481, 720, 1014, 1023, 1029
HpyF3I CTNAG 1 cut(s) 370
HpySE526I ACGT 1 cut(s) 532
Hsp92II CATG 3 cut(s) 128, 349, 1141
HspAI GCGC 3 cut(s) 287, 888, 1161
Ksp22I TGATCA 1 cut(s) 801
Kzo9I GATC 7 cut(s) 119, 237, 298, 312, 391, 619, 801
LguI GCTCTTC 1 cut(s) 824
LmnI GCTCC 3 cut(s) 294, 719, 789
Lsp1109I GCAGC 1 cut(s) 1071
LweI GCATC 4 cut(s) 123, 786, 797, 1088
MaeI CTAG 1 cut(s) 453
MaeII ACGT 1 cut(s) 532
MaeIII GTNAC 4 cut(s) 176, 341, 444, 455
MalI GATC 7 cut(s) 121, 239, 300, 314, 393, 621, 803
MbiI CCGCTC 2 cut(s) 714, 1023
MboI GATC 7 cut(s) 119, 237, 298, 312, 391, 619, 801
MflI RGATCY 1 cut(s) 391
MhlI GDGCHC 1 cut(s) 786
MluCI AATT 8 cut(s) 107, 221, 566, 607, 703, 920, 1093, 1168
MlyI GAGTC 2 cut(s) 358, 1117
MmeI TCCRAC 1 cut(s) 640
MroXI GAANNNNTTC 1 cut(s) 647
MseI TTAA 3 cut(s) 90, 318, 494
MslI CAYNNNNRTG 1 cut(s) 596
MspI CCGG 1 cut(s) 1115
MspR9I CCNGG 2 cut(s) 21, 982
Mva1269I GAATGC 1 cut(s) 1116
MvaI CCWGG 2 cut(s) 21, 982
MvnI CGCG 2 cut(s) 287, 1008
MwoI GCNNNNNNNGC 5 cut(s) 481, 720, 1014, 1023, 1029
NcoI CCATGG 1 cut(s) 1137
NdeI CATATG 1 cut(s) 465
NdeII GATC 7 cut(s) 119, 237, 298, 312, 391, 619, 801
NlaIII CATG 3 cut(s) 128, 349, 1141
NlaIV GGNNCC 4 cut(s) 42, 102, 215, 785
NmuCI GTSAC 3 cut(s) 176, 341, 444
NsbI TGCGCA 1 cut(s) 889
NspI RCATGY 1 cut(s) 128
OliI CACNNNNGTG 1 cut(s) 596
PaeR7I CTCGAG 1 cut(s) 1125
PaqCI CACCTGC 1 cut(s) 313
PciSI GCTCTTC 1 cut(s) 824
PctI GAATGC 1 cut(s) 1116
PdmI GAANNNNTTC 1 cut(s) 647
PfeI GAWTC 3 cut(s) 365, 584, 698
PkrI GCNGC 2 cut(s) 1025, 1061
PleI GAGTC 2 cut(s) 357, 1117
PpsI GAGTC 2 cut(s) 357, 1117
PpuMI RGGWCCY 1 cut(s) 40
PshAI GACNNNNGTC 1 cut(s) 348
Psp5II RGGWCCY 1 cut(s) 40
Psp6I CCWGG 2 cut(s) 19, 980
PspGI CCWGG 2 cut(s) 19, 980
PspN4I GGNNCC 4 cut(s) 42, 102, 215, 785
PspPI GGNCC 4 cut(s) 40, 214, 276, 1103
PspPPI RGGWCCY 1 cut(s) 40
PspXI VCTCGAGB 1 cut(s) 1125
PsuI RGATCY 1 cut(s) 391
RsaI GTAC 2 cut(s) 184, 332
RsaNI GTAC 2 cut(s) 183, 331
RseI CAYNNNNRTG 1 cut(s) 596
SapI GCTCTTC 1 cut(s) 824
SaqAI TTAA 3 cut(s) 90, 318, 494
SatI GCNGC 2 cut(s) 1024, 1060
Sau3AI GATC 7 cut(s) 119, 237, 298, 312, 391, 619, 801
Sau96I GGNCC 4 cut(s) 40, 214, 276, 1103
ScaI AGTACT 1 cut(s) 184
SchI GAGTC 2 cut(s) 358, 1117
ScrFI CCNGG 2 cut(s) 21, 982
SduI GDGCHC 1 cut(s) 786
SfaNI GCATC 4 cut(s) 123, 786, 797, 1088
Sfr274I CTCGAG 1 cut(s) 1125
SinI GGWCC 4 cut(s) 40, 214, 276, 1103
SlaI CTCGAG 1 cut(s) 1125
SmiMI CAYNNNNRTG 1 cut(s) 596
SmlI CTYRAG 2 cut(s) 638, 1125
SmoI CTYRAG 2 cut(s) 638, 1125
SpeI ACTAGT 1 cut(s) 452
Sse9I AATT 8 cut(s) 107, 221, 566, 607, 703, 920, 1093, 1168
SsiI CCGC 7 cut(s) 263, 484, 712, 957, 1008, 1023, 1049
SspMI CTAG 1 cut(s) 453
StyD4I CCNGG 2 cut(s) 19, 980
StyI CCWWGG 1 cut(s) 1137
TaaI ACNGT 3 cut(s) 182, 595, 879
TaiI ACGT 1 cut(s) 535
TaqI TCGA 2 cut(s) 849, 1126
TaqII GACCGA 1 cut(s) 264
TasI AATT 8 cut(s) 107, 221, 566, 607, 703, 920, 1093, 1168
TatI WGTACW 1 cut(s) 182
TauI GCSGC 1 cut(s) 1026
TfiI GAWTC 3 cut(s) 365, 584, 698
Tru1I TTAA 3 cut(s) 90, 318, 494
Tru9I TTAA 3 cut(s) 90, 318, 494
TscAI CASTG 4 cut(s) 346, 486, 658, 1076
TseFI GTSAC 3 cut(s) 176, 341, 444
TseI GCWGC 1 cut(s) 1059
Tsp45I GTSAC 3 cut(s) 176, 341, 444
TspDTI ATGAA 5 cut(s) 378, 455, 718, 777, 882
TspRI CASTG 4 cut(s) 346, 486, 658, 1076
VpaK11BI GGWCC 4 cut(s) 40, 214, 276, 1103
XapI RAATTY 4 cut(s) 107, 607, 1093, 1168
XceI RCATGY 1 cut(s) 128
XcmI CCANNNNNNNNNTGG 2 cut(s) 973, 1025
XhoI CTCGAG 1 cut(s) 1125
XmnI GAANNNNTTC 1 cut(s) 647
XspI CTAG 1 cut(s) 453
ZrmI AGTACT 1 cut(s) 184
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.