Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0004443

Physical Location & Seq

Genomic Coordinates Reverse (-)

11268203 .. 11269703

Gene Structure 1501 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g08550.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGACCAATTTGAATATAAAGGGAAGTGATGATACCTTCGTTTCAACTGCTGATCGGGTGAAATCCTTCAAAACTGATGAAGATCCTTCCTTTGTGGAACTTTTATTCCAGTATGGCCGGTATCTGCTTATTTCTTGTTCACGGGTTGGAACTCAAGTTGCAAACCTGCAGGGTATATGGAGCAAGGATCTTTACCCTCCATGGGATGGCGCTCAGCATCTAAACATAAATCTTCAAATGAATTACTGGCCATCCCTTCCTTGTAACCTAAGAGAATGCCAGGAGCCCTTATTTGATTACACATCTTCTTTATCCATCAACGGGAGTAAAACGGCTAAGGTGAACTATGAAGCCAGTGGTTGGGTTGTGCATCAAGTGTCTGACATATGGGCGAAAACATCACCCGATCGAGGTCAAGCTGTGTGGGCTTTATGGCCAATGGGAGGAGCCTGGATTTGTACTCATCTATGGGAACATTTTACTTATACGATGGACAAAGATTTTCTAAAAAACAAGGCATATCCTTTGTTGGAAGGATGTACATCATTTCTGCTAGATTGGTTGATTGAAGGCCGTGGAGGGTATCTTGAAACCAACCCGTCAACTTCTCCAGAGCACATGTTTATTGCTCCTGATGGTAAGCAGGCAAGCGTGAGCTACTCATCAACCATGGACATATCAATCATCAAAGAAGTTTTCTCTGCAATACTTTCTGCGGCTGAGGTTTTATTTTGGGAAAAACACAGGATGCTCTTGTTGGAAAAGTTCGTGAGGCTCAATCTCGGCTGCCACCCACAAAAATTGCTAAAGATGGTTCTATCATGGAATGGGCACAAGATTTTGAGGACCCAGATGTGCACCATCGACATGTATCACACCTGTTTGGCTTGTATCCAGGACATACAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004560 GO:0005575 GO:0005576 GO:0015928 GO:0016787 GO:0016798 GO:0047513 GO:0048046

KEGG Pathways

Metabolic & Signaling

ko00511 map00511

Pfam Domains

Protein Families

Glyco_hyd_65N_2

Protein Analysis

303

Amino Acids

34.5

Weight (kDa)

5.98

Isoelectric Point (pI)

34.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004443)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34260
fragaria_vesca	FvH4_2g04810 FvH4_2g04810 FvH4_2g04810 FvH4_2g04810 FvH4_2g04870 FvH4_2g04870 FvH4_2g04870 FvH4_2g04870
malus_domestica	MD10G1099200.v1.1 MD10G1099400.v1.1
prunus_persica	Prupe.8G137300_v2.0.a1 Prupe.8G137300_v2.0.a1 Prupe.8G137300_v2.0.a1
pyrus_communis	pycom10g08550 pycom10g08560 pycom10g08570
rosa_chinensis	RchiOBHm_Chr6g0254541 RchiOBHm_Chr6g0254581
rosa_laevigata	RLG00000014903 RLG00000014905
rosa_multiflora	Rmu_co8517753.1_g000001 Rmu_sc0008789.1_g000011 Rmu_sc0009578.1_g000012
rosa_roxburghii	Rroxscaffold_7G00210690
rosa_rugosa	Rorug05G0553300
rosa_samantha	Rh6AG070200 Rh6BG062700 Rh6CG062600 Rh6DG059600
rosa_wichuraiana	Rw6G006150 Rw6G006190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	174
AccB7I	CCANNNNNTGG	2 cut(s)	206, 360
AciI	CCGC	1 cut(s)	716
AclWI	GGATC	2 cut(s)	77, 195
AcoI	YGGCCR	3 cut(s)	115, 248, 434
AfaI	GTAC	2 cut(s)	460, 541
AfiI	CCNNNNNNNGG	6 cut(s)	202, 206, 321, 360, 410, 443
AflIII	ACRYGT	2 cut(s)	618, 867
AgsI	TTSAA	6 cut(s)	13, 45, 70, 236, 569, 590
AjnI	CCWGG	3 cut(s)	279, 449, 894
AloI	GAACNNNNNNTCC	2 cut(s)	90, 122
AluBI	AGCT	2 cut(s)	419, 657
AluI	AGCT	2 cut(s)	419, 657
Alw21I	GWGCWC	2 cut(s)	618, 860
Alw44I	GTGCAC	1 cut(s)	856
AlwI	GGATC	2 cut(s)	77, 195
AoxI	GGCC	4 cut(s)	115, 248, 434, 571
ApaLI	GTGCAC	1 cut(s)	856
ApeKI	GCWGC	1 cut(s)	786
Asp700I	GAANNNNTTC	1 cut(s)	65
AspLEI	GCGC	1 cut(s)	212
AspS9I	GGNCC	1 cut(s)	846
AsuHPI	GGTGA	3 cut(s)	70, 352, 393
AvaII	GGWCC	1 cut(s)	846
BaeGI	GKGCMC	2 cut(s)	834, 860
BaeI	ACNNNNGTAYC	2 cut(s)	24, 57
BalI	TGGCCA	2 cut(s)	250, 436
BanII	GRGCYC	1 cut(s)	288
BarI	GAAGNNNNNNTAC	2 cut(s)	16, 48
Bbv12I	GWGCWC	2 cut(s)	618, 860
BbvCI	CCTCAGC	1 cut(s)	720
BbvI	GCAGC	1 cut(s)	773
BccI	CCATC	7 cut(s)	200, 259, 323, 484, 629, 805, 869
BceAI	ACGGC	2 cut(s)	348, 558
BciT130I	CCWGG	3 cut(s)	281, 451, 896
BciVI	GTATCC	1 cut(s)	902
BfaI	CTAG	1 cut(s)	554
BfmI	CTRYAG	1 cut(s)	167
BfoI	RGCGCY	1 cut(s)	213
BfuAI	ACCTGC	1 cut(s)	174
BfuI	GTATCC	1 cut(s)	902
BisI	GCNGC	2 cut(s)	717, 787
BlpI	GCTNAGC	1 cut(s)	213
BlsI	GCNGC	2 cut(s)	718, 788
Bme1390I	CCNGG	3 cut(s)	281, 451, 896
Bme18I	GGWCC	1 cut(s)	846
BmgT120I	GGNCC	1 cut(s)	846
BmiI	GGNNCC	3 cut(s)	285, 448, 848
BmrFI	CCNGG	3 cut(s)	281, 451, 896
BmsI	GCATC	3 cut(s)	226, 379, 738
BpmI	CTGGAG	1 cut(s)	594
Bpu10I	CCTNAGC	2 cut(s)	336, 720
Bpu1102I	GCTNAGC	1 cut(s)	213
BpuEI	CTTGAG	1 cut(s)	138
BsaBI	GATNNNNATC	2 cut(s)	81, 541
BsaJI	CCNNGG	3 cut(s)	200, 574, 669
Bsc4I	CCNNNNNNNGG	6 cut(s)	202, 206, 321, 360, 410, 443
Bse118I	RCCGGY	1 cut(s)	117
Bse1I	ACTGG	3 cut(s)	109, 251, 354
Bse8I	GATNNNNATC	2 cut(s)	81, 541
BseBI	CCWGG	3 cut(s)	281, 451, 896
BseDI	CCNNGG	3 cut(s)	200, 574, 669
BseGI	GGATG	4 cut(s)	211, 251, 542, 753
BseJI	GATNNNNATC	2 cut(s)	81, 541
BseLI	CCNNNNNNNGG	6 cut(s)	202, 206, 321, 360, 410, 443
BseMII	CTCAG	2 cut(s)	227, 711
BseNI	ACTGG	3 cut(s)	109, 251, 354
BseRI	GAGGAG	1 cut(s)	459
BseSI	GKGCMC	2 cut(s)	834, 860
BseXI	GCAGC	1 cut(s)	773
Bsh1285I	CGRYCG	1 cut(s)	409
BshFI	GGCC	4 cut(s)	117, 250, 436, 573
BsiEI	CGRYCG	1 cut(s)	409
BsiHKAI	GWGCWC	2 cut(s)	618, 860
BsiSI	CCGG	1 cut(s)	118
BslI	CCNNNNNNNGG	6 cut(s)	202, 206, 321, 360, 410, 443
BsmI	GAATGC	1 cut(s)	281
BsnI	GGCC	4 cut(s)	117, 250, 436, 573
Bsp1286I	GDGCHC	4 cut(s)	288, 618, 834, 860
Bsp1407I	TGTACA	1 cut(s)	539
Bsp143I	GATC	4 cut(s)	52, 82, 187, 406
Bsp1720I	GCTNAGC	1 cut(s)	213
Bsp19I	CCATGG	2 cut(s)	200, 669
BspACI	CCGC	1 cut(s)	716
BspANI	GGCC	4 cut(s)	117, 250, 436, 573
BspCNI	CTCAG	2 cut(s)	226, 712
BspLI	GGNNCC	3 cut(s)	285, 448, 848
BspMAI	CTGCAG	1 cut(s)	171
BspMI	ACCTGC	1 cut(s)	174
BspPI	GGATC	2 cut(s)	77, 195
BsrFI	RCCGGY	1 cut(s)	117
BsrGI	TGTACA	1 cut(s)	539
BsrI	ACTGG	3 cut(s)	109, 251, 354
BssAI	RCCGGY	1 cut(s)	117
BssECI	CCNNGG	3 cut(s)	200, 574, 669
BssMI	GATC	4 cut(s)	52, 82, 187, 406
BssT1I	CCWWGG	2 cut(s)	200, 669
Bst2UI	CCWGG	3 cut(s)	281, 451, 896
BstAUI	TGTACA	1 cut(s)	539
BstC8I	GCNNGC	2 cut(s)	645, 649
BstDEI	CTNAG	4 cut(s)	213, 269, 336, 720
BstDSI	CCRYGG	3 cut(s)	200, 574, 669
BstF5I	GGATG	4 cut(s)	211, 251, 542, 753
BstH2I	RGCGCY	1 cut(s)	213
BstHHI	GCGC	1 cut(s)	212
BstKTI	GATC	4 cut(s)	55, 85, 190, 409
BstMBI	GATC	4 cut(s)	52, 82, 187, 406
BstMCI	CGRYCG	1 cut(s)	409
BstMWI	GCNNNNNNNGC	1 cut(s)	425
BstNI	CCWGG	3 cut(s)	281, 451, 896
BstNSI	RCATGY	2 cut(s)	622, 871
BstSCI	CCNGG	3 cut(s)	279, 449, 894
BstSFI	CTRYAG	1 cut(s)	167
BstSLI	GKGCMC	2 cut(s)	834, 860
BstV1I	GCAGC	1 cut(s)	773
BstX2I	RGATCY	2 cut(s)	82, 187
BstYI	RGATCY	2 cut(s)	82, 187
BsuI	GTATCC	1 cut(s)	902
BsuRI	GGCC	4 cut(s)	117, 250, 436, 573
BtgI	CCRYGG	3 cut(s)	200, 574, 669
BtsCI	GGATG	4 cut(s)	211, 251, 542, 753
BtsIMutI	CAGTG	1 cut(s)	361
BveI	ACCTGC	1 cut(s)	174
Cac8I	GCNNGC	2 cut(s)	645, 649
CfoI	GCGC	1 cut(s)	212
Cfr10I	RCCGGY	1 cut(s)	117
Cfr13I	GGNCC	1 cut(s)	846
Csp6I	GTAC	2 cut(s)	459, 540
CspCI	CAANNNNNGTGG	4 cut(s)	404, 439, 783, 818
CviAII	CATG	5 cut(s)	201, 619, 670, 822, 868
CviQI	GTAC	2 cut(s)	459, 540
DdeI	CTNAG	4 cut(s)	213, 269, 336, 720
DpnI	GATC	4 cut(s)	54, 84, 189, 408
DpnII	GATC	4 cut(s)	52, 82, 187, 406
EaeI	YGGCCR	3 cut(s)	115, 248, 434
Eco130I	CCWWGG	2 cut(s)	200, 669
Eco24I	GRGCYC	1 cut(s)	288
Eco47I	GGWCC	1 cut(s)	846
EcoO109I	RGGNCCY	1 cut(s)	846
EcoRII	CCWGG	3 cut(s)	279, 449, 894
EcoT14I	CCWWGG	2 cut(s)	200, 669
EcoT38I	GRGCYC	1 cut(s)	288
ErhI	CCWWGG	2 cut(s)	200, 669
FaeI	CATG	5 cut(s)	204, 622, 673, 825, 871
FatI	CATG	5 cut(s)	200, 618, 669, 821, 867
FauNDI	CATATG	1 cut(s)	386
Fnu4HI	GCNGC	2 cut(s)	717, 787
FokI	GGATG	4 cut(s)	218, 238, 549, 760
FriOI	GRGCYC	1 cut(s)	288
Fsp4HI	GCNGC	2 cut(s)	717, 787
FspBI	CTAG	1 cut(s)	554
GlaI	GCGC	1 cut(s)	211
GluI	GCNGC	2 cut(s)	717, 787
GsuI	CTGGAG	1 cut(s)	594
HaeII	RGCGCY	1 cut(s)	213
HaeIII	GGCC	4 cut(s)	117, 250, 436, 573
HapII	CCGG	1 cut(s)	118
HhaI	GCGC	1 cut(s)	212
Hin1II	CATG	5 cut(s)	204, 622, 673, 825, 871
Hin6I	GCGC	1 cut(s)	210
HinP1I	GCGC	1 cut(s)	210
HincII	GTYRAC	1 cut(s)	603
HindII	GTYRAC	1 cut(s)	603
HpaII	CCGG	1 cut(s)	118
HphI	GGTGA	3 cut(s)	70, 352, 393
Hpy166II	GTNNAC	4 cut(s)	140, 343, 603, 858
Hpy188I	TCNGA	1 cut(s)	382
Hpy188III	TCNNGA	4 cut(s)	587, 611, 632, 769
Hpy8I	GTNNAC	4 cut(s)	140, 343, 603, 858
HpyAV	CCTTC	6 cut(s)	46, 76, 96, 266, 527, 563
HpyCH4V	TGCA	5 cut(s)	161, 169, 370, 704, 858
HpyF10VI	GCNNNNNNNGC	1 cut(s)	425
HpyF3I	CTNAG	4 cut(s)	213, 269, 336, 720
Hsp92II	CATG	5 cut(s)	204, 622, 673, 825, 871
HspAI	GCGC	1 cut(s)	210
Kzo9I	GATC	4 cut(s)	52, 82, 187, 406
LmnI	GCTCC	4 cut(s)	180, 283, 446, 634
Lsp1109I	GCAGC	1 cut(s)	773
LweI	GCATC	3 cut(s)	226, 379, 738
MaeI	CTAG	1 cut(s)	554
MaeIII	GTNAC	1 cut(s)	263
MalI	GATC	4 cut(s)	54, 84, 189, 408
MboI	GATC	4 cut(s)	52, 82, 187, 406
MboII	GAAGA	3 cut(s)	92, 224, 297
MflI	RGATCY	2 cut(s)	82, 187
MhlI	GDGCHC	4 cut(s)	288, 618, 834, 860
MlsI	TGGCCA	2 cut(s)	250, 436
MluCI	AATT	3 cut(s)	7, 241, 800
MluNI	TGGCCA	2 cut(s)	250, 436
MmeI	TCCRAC	3 cut(s)	127, 510, 738
MnlI	CCTC	7 cut(s)	207, 404, 437, 572, 715, 765, 837
Mox20I	TGGCCA	2 cut(s)	250, 436
MroXI	GAANNNNTTC	1 cut(s)	65
MscI	TGGCCA	2 cut(s)	250, 436
MslI	CAYNNNNRTG	1 cut(s)	866
Msp20I	TGGCCA	2 cut(s)	250, 436
MspI	CCGG	1 cut(s)	118
MspR9I	CCNGG	3 cut(s)	281, 451, 896
Mva1269I	GAATGC	1 cut(s)	281
MvaI	CCWGG	3 cut(s)	281, 451, 896
MwoI	GCNNNNNNNGC	1 cut(s)	425
NcoI	CCATGG	2 cut(s)	200, 669
NdeI	CATATG	1 cut(s)	386
NdeII	GATC	4 cut(s)	52, 82, 187, 406
NlaIII	CATG	5 cut(s)	204, 622, 673, 825, 871
NlaIV	GGNNCC	3 cut(s)	285, 448, 848
NmeAIII	GCCGAG	1 cut(s)	762
NspI	RCATGY	2 cut(s)	622, 871
PciI	ACATGT	2 cut(s)	618, 867
PctI	GAATGC	1 cut(s)	281
PdmI	GAANNNNTTC	1 cut(s)	65
PflMI	CCANNNNNTGG	2 cut(s)	206, 360
PfoI	TCCNGGA	1 cut(s)	894
PkrI	GCNGC	2 cut(s)	718, 788
Ple19I	CGATCG	1 cut(s)	409
PpuMI	RGGWCCY	1 cut(s)	846
PscI	ACATGT	2 cut(s)	618, 867
Psp5II	RGGWCCY	1 cut(s)	846
Psp6I	CCWGG	3 cut(s)	279, 449, 894
PspGI	CCWGG	3 cut(s)	279, 449, 894
PspN4I	GGNNCC	3 cut(s)	285, 448, 848
PspPI	GGNCC	1 cut(s)	846
PspPPI	RGGWCCY	1 cut(s)	846
PstI	CTGCAG	1 cut(s)	171
PsuI	RGATCY	2 cut(s)	82, 187
PvuI	CGATCG	1 cut(s)	409
RsaI	GTAC	2 cut(s)	460, 541
RsaNI	GTAC	2 cut(s)	459, 540
RseI	CAYNNNNRTG	1 cut(s)	866
SatI	GCNGC	2 cut(s)	717, 787
Sau3AI	GATC	4 cut(s)	52, 82, 187, 406
Sau96I	GGNCC	1 cut(s)	846
SbfI	CCTGCAGG	1 cut(s)	171
ScrFI	CCNGG	3 cut(s)	281, 451, 896
SdaI	CCTGCAGG	1 cut(s)	171
SduI	GDGCHC	4 cut(s)	288, 618, 834, 860
SetI	ASST	9 cut(s)	38, 168, 270, 342, 415, 421, 659, 726, 881
SfaNI	GCATC	3 cut(s)	226, 379, 738
SfcI	CTRYAG	1 cut(s)	167
SinI	GGWCC	1 cut(s)	846
SmiMI	CAYNNNNRTG	1 cut(s)	866
SmlI	CTYRAG	1 cut(s)	153
SmoI	CTYRAG	1 cut(s)	153
Sse8387I	CCTGCAGG	1 cut(s)	171
Sse9I	AATT	3 cut(s)	7, 241, 800
SsiI	CCGC	1 cut(s)	716
SspMI	CTAG	1 cut(s)	554
StyD4I	CCNGG	3 cut(s)	279, 449, 894
StyI	CCWWGG	2 cut(s)	200, 669
TaqI	TCGA	2 cut(s)	409, 864
TasI	AATT	3 cut(s)	7, 241, 800
TatI	WGTACW	2 cut(s)	458, 539
TauI	GCSGC	1 cut(s)	719
TscAI	CASTG	1 cut(s)	361
TseI	GCWGC	1 cut(s)	786
TspDTI	ATGAA	3 cut(s)	93, 254, 363
TspRI	CASTG	1 cut(s)	361
Van91I	CCANNNNNTGG	2 cut(s)	206, 360
VneI	GTGCAC	1 cut(s)	856
VpaK11BI	GGWCC	1 cut(s)	846
XceI	RCATGY	2 cut(s)	622, 871
XmnI	GAANNNNTTC	1 cut(s)	65
XspI	CTAG	1 cut(s)	554

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.