Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0004443

Physical Location & Seq

Genomic Coordinates Reverse (-)

9792316 .. 9795402

Gene Structure 3087 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G006190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1155 bp

ATGGAGGATGGTGACTGGGTTCTGGTGCGGCCGCCTGCAGAGAAGGACCTCTGGACCCCAAGTTTAGTGAAGGAGGATGAGAGTTCTAAGCCTTTGAAGGTTACTTTTGGTGGGCCTGCGAAGTTCTGGACTGATGCAATTCCAATTGGGAATGGGAGGCTTGGAGCTATGGTCTGGGGTGGTGTGCCTTCAGAAACTCTTCAGCTCAATGAGGACACACTCTGGACTGGAACTCCGGGCAACTACACCAACCCAAATGCTCCACAGGCACTAACAGAGGTTAGGAAACTTGTTGATGATGGTAAATATGTTGAAGCTACTGAAGCTGCGGTCAAGTTGTCCGGAGATCCTTCTGATGTATACCAACTACTCGGCGACATCAACCTAGAATTTGAGGATTCGCATCTCAAGTATGCTGAAGAAACTTACAGCAGAGAGCTAGACCTAGATACTGCAACAGCAAGGATAAAATATTCTGTGGGTGATGTAGAATATACTAGGGAGCATTTTGCTTCGAATCCCGATCAAGTGATTGTGACAAAGATCTCTGCAAGTAAATCAGGGTCCCTATCATTCACAGTTTCTCTAGACAGCAAGATGCATCATGGTTCACATTTAAATGGTAAAAACCAAATTATACTTGAAGGAAGTTGTCCTGGTAGAAGAATTGCACCAAAGTATAATGACAATCCAGAGGGGATTCAGTTTACTGCAGTTCTTGATTTGCAGATTAGTGGTGACAAAGGTGTGATACATGCTTTGGATGACAAGAAATTTAGAGTTGAAGAGGCAGATTCGGCTGTTTTGCTTCTGGTGGCCTCATCTTCATTTAAGGATGCATTTACTAAGCCTTCTGATTCTAAGAGAAATCCAACTTCAGAGTCTCTCACTGCATTGAATTCAATAAGAAATTTGTCATATTCTGACCTTTATGCTCATCATTTGGATGACTATCAGAATCTTTTTCATCGTGTCTCATTGCAGCTCTCTAAGAGCTCTAAGAGCATATTAGGAAATAAAACTTTGGAGATGAAGAAGCTCAACCCTATTACCAATTTGAATTTCAAGAGAAGTGACAATGCCTTGGGTTCTACTGCTGACAGGGTGAAATCCTTTAAAACTGATGAAGATCCTTTAAAACTATTTAATCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004560 GO:0005575 GO:0005576 GO:0015928 GO:0016787 GO:0016798 GO:0047513 GO:0048046

KEGG Pathways

Metabolic & Signaling

ko00511 map00511

Pfam Domains

Protein Families

Glyco_hyd_65N_2

Protein Analysis

384

Amino Acids

42.39

Weight (kDa)

5.38

Isoelectric Point (pI)

28.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hyd_65N_2	PF14498	36 - 279	2.1e-64	Glycosyl hydrolase family 65, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004443)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34260
fragaria_vesca	FvH4_2g04810 FvH4_2g04810 FvH4_2g04810 FvH4_2g04810 FvH4_2g04870 FvH4_2g04870 FvH4_2g04870 FvH4_2g04870
malus_domestica	MD10G1099200.v1.1 MD10G1099400.v1.1
prunus_persica	Prupe.8G137300_v2.0.a1 Prupe.8G137300_v2.0.a1 Prupe.8G137300_v2.0.a1
pyrus_communis	pycom10g08550 pycom10g08560 pycom10g08570
rosa_chinensis	RchiOBHm_Chr6g0254541 RchiOBHm_Chr6g0254581
rosa_laevigata	RLG00000014903 RLG00000014905
rosa_multiflora	Rmu_co8517753.1_g000001 Rmu_sc0008789.1_g000011 Rmu_sc0009578.1_g000012
rosa_roxburghii	Rroxscaffold_7G00210690
rosa_rugosa	Rorug05G0553300
rosa_samantha	Rh6AG070200 Rh6BG062700 Rh6CG062600 Rh6DG059600
rosa_wichuraiana	Rw6G006150 Rw6G006190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	360
AccIII	TCCGGA	1 cut(s)	341
AciI	CCGC	3 cut(s)	28, 32, 329
AclWI	GGATC	2 cut(s)	341, 1124
AcoI	YGGCCR	1 cut(s)	29
AcsI	RAATTY	5 cut(s)	389, 773, 898, 910, 1060
AcuI	CTGAAG	9 cut(s)	174, 185, 285, 342, 438, 741, 861, 1647, 2295
AgsI	TTSAA	8 cut(s)	97, 314, 644, 785, 898, 903, 1060, 1066
AjnI	CCWGG	1 cut(s)	655
AjuI	GAANNNNNNNTTGG	2 cut(s)	1046, 1078
AluBI	AGCT	8 cut(s)	167, 205, 317, 326, 439, 985, 996, 1039
AluI	AGCT	8 cut(s)	167, 205, 317, 326, 439, 985, 996, 1039
Alw21I	GWGCWC	1 cut(s)	998
Alw26I	GTCTC	2 cut(s)	888, 979
AlwI	GGATC	2 cut(s)	341, 1124
Aor13HI	TCCGGA	1 cut(s)	341
AoxI	GGCC	3 cut(s)	29, 113, 816
ApeKI	GCWGC	2 cut(s)	326, 982
ApoI	RAATTY	5 cut(s)	389, 773, 898, 910, 1060
Asp700I	GAANNNNTTC	1 cut(s)	198
AspS9I	GGNCC	4 cut(s)	46, 54, 113, 564
AsuC2I	CCSGG	1 cut(s)	237
AsuHPI	GGTGA	4 cut(s)	23, 494, 749, 1117
AsuII	TTCGAA	1 cut(s)	515
AvaII	GGWCC	3 cut(s)	46, 54, 564
BanII	GRGCYC	1 cut(s)	998
Bbv12I	GWGCWC	1 cut(s)	998
BbvI	GCAGC	2 cut(s)	313, 994
BccI	CCATC	2 cut(s)	2, 293
BciT130I	CCWGG	1 cut(s)	657
BcnI	CCSGG	1 cut(s)	237
BcoDI	GTCTC	2 cut(s)	888, 979
BfaI	CTAG	5 cut(s)	386, 440, 446, 498, 587
BfmI	CTRYAG	2 cut(s)	36, 711
BglII	AGATCT	1 cut(s)	543
BisI	GCNGC	4 cut(s)	29, 32, 327, 983
BlsI	GCNGC	4 cut(s)	30, 33, 328, 984
Bme1390I	CCNGG	2 cut(s)	237, 657
Bme18I	GGWCC	3 cut(s)	46, 54, 564
BmgT120I	GGNCC	4 cut(s)	46, 54, 113, 564
BmiI	GGNNCC	3 cut(s)	56, 565, 566
BmrFI	CCNGG	2 cut(s)	237, 657
BmrI	ACTGGG	1 cut(s)	25
BmsI	GCATC	5 cut(s)	124, 412, 588, 610, 826
BmuI	ACTGGG	1 cut(s)	25
Bpu14I	TTCGAA	1 cut(s)	515
BpuEI	CTTGAG	1 cut(s)	392
BpuMI	CCSGG	1 cut(s)	237
BsaBI	GATNNNNATC	3 cut(s)	402, 951, 1128
BsaJI	CCNNGG	1 cut(s)	1083
BsaWI	WCCGGW	1 cut(s)	341
BsaXI	ACNNNNNCTCC	4 cut(s)	156, 186, 217, 247
Bse1I	ACTGG	2 cut(s)	20, 232
Bse3DI	GCAATG	1 cut(s)	977
Bse8I	GATNNNNATC	3 cut(s)	402, 951, 1128
BseAI	TCCGGA	1 cut(s)	341
BseBI	CCWGG	1 cut(s)	657
BseDI	CCNNGG	1 cut(s)	1083
BseGI	GGATG	5 cut(s)	13, 82, 769, 841, 952
BseJI	GATNNNNATC	3 cut(s)	402, 951, 1128
BseMI	GCAATG	1 cut(s)	977
BseNI	ACTGG	2 cut(s)	20, 232
BseX3I	CGGCCG	1 cut(s)	29
BseXI	GCAGC	2 cut(s)	313, 994
Bsh1285I	CGRYCG	1 cut(s)	32
BshFI	GGCC	3 cut(s)	31, 115, 818
BsiEI	CGRYCG	1 cut(s)	32
BsiHKAI	GWGCWC	1 cut(s)	998
BsiSI	CCGG	2 cut(s)	236, 342
BslFI	GGGAC	1 cut(s)	550
BsmAI	GTCTC	2 cut(s)	888, 979
BsmFI	GGGAC	1 cut(s)	550
BsnI	GGCC	3 cut(s)	31, 115, 818
Bsp119I	TTCGAA	1 cut(s)	515
Bsp1286I	GDGCHC	1 cut(s)	998
Bsp13I	TCCGGA	1 cut(s)	341
Bsp143I	GATC	4 cut(s)	346, 523, 543, 1129
BspACI	CCGC	3 cut(s)	28, 32, 329
BspANI	GGCC	3 cut(s)	31, 115, 818
BspEI	TCCGGA	1 cut(s)	341
BspLI	GGNNCC	3 cut(s)	56, 565, 566
BspMAI	CTGCAG	2 cut(s)	40, 715
BspPI	GGATC	2 cut(s)	341, 1124
BspT104I	TTCGAA	1 cut(s)	515
BsrDI	GCAATG	1 cut(s)	977
BsrI	ACTGG	2 cut(s)	20, 232
BssECI	CCNNGG	1 cut(s)	1083
BssMI	GATC	4 cut(s)	346, 523, 543, 1129
BssNAI	GTATAC	1 cut(s)	361
BssT1I	CCWWGG	1 cut(s)	1083
Bst1107I	GTATAC	1 cut(s)	361
Bst2UI	CCWGG	1 cut(s)	657
Bst4CI	ACNGT	1 cut(s)	580
Bst6I	CTCTTC	2 cut(s)	204, 780
BstBI	TTCGAA	1 cut(s)	515
BstC8I	GCNNGC	2 cut(s)	36, 117
BstDEI	CTNAG	5 cut(s)	87, 846, 861, 990, 999
BstF5I	GGATG	5 cut(s)	13, 82, 769, 841, 952
BstKTI	GATC	4 cut(s)	349, 526, 546, 1132
BstMAI	GTCTC	2 cut(s)	888, 979
BstMBI	GATC	4 cut(s)	346, 523, 543, 1129
BstMCI	CGRYCG	1 cut(s)	32
BstMWI	GCNNNNNNNGC	4 cut(s)	266, 323, 797, 1002
BstNI	CCWGG	1 cut(s)	657
BstNSI	RCATGY	1 cut(s)	758
BstSCI	CCNGG	2 cut(s)	235, 655
BstSFI	CTRYAG	2 cut(s)	36, 711
BstV1I	GCAGC	2 cut(s)	313, 994
BstX2I	RGATCY	3 cut(s)	346, 543, 1129
BstYI	RGATCY	3 cut(s)	346, 543, 1129
BstZ17I	GTATAC	1 cut(s)	361
BstZI	CGGCCG	1 cut(s)	29
BsuRI	GGCC	3 cut(s)	31, 115, 818
BtsCI	GGATG	5 cut(s)	13, 82, 769, 841, 952
BtsI	GCAGTG	1 cut(s)	888
BtsIMutI	CAGTG	1 cut(s)	888
Cac8I	GCNNGC	2 cut(s)	36, 117
CciNI	GCGGCCGC	1 cut(s)	29
Cfr13I	GGNCC	4 cut(s)	46, 54, 113, 564
CviAII	CATG	2 cut(s)	605, 755
DdeI	CTNAG	5 cut(s)	87, 846, 861, 990, 999
DpnI	GATC	4 cut(s)	348, 525, 545, 1131
DpnII	GATC	4 cut(s)	346, 523, 543, 1129
DraI	TTTAAA	3 cut(s)	618, 1117, 1137
EaeI	YGGCCR	1 cut(s)	29
EagI	CGGCCG	1 cut(s)	29
Eam1104I	CTCTTC	2 cut(s)	204, 780
EarI	CTCTTC	2 cut(s)	204, 780
Ecl136II	GAGCTC	1 cut(s)	996
EclXI	CGGCCG	1 cut(s)	29
Eco130I	CCWWGG	1 cut(s)	1083
Eco24I	GRGCYC	1 cut(s)	998
Eco47I	GGWCC	3 cut(s)	46, 54, 564
Eco52I	CGGCCG	1 cut(s)	29
Eco53kI	GAGCTC	1 cut(s)	996
Eco57I	CTGAAG	5 cut(s)	174, 185, 342, 438, 861
EcoICRI	GAGCTC	1 cut(s)	996
EcoO109I	RGGNCCY	2 cut(s)	46, 564
EcoRI	GAATTC	1 cut(s)	898
EcoRII	CCWGG	1 cut(s)	655
EcoT14I	CCWWGG	1 cut(s)	1083
EcoT22I	ATGCAT	2 cut(s)	603, 841
EcoT38I	GRGCYC	1 cut(s)	998
ErhI	CCWWGG	1 cut(s)	1083
FaeI	CATG	2 cut(s)	608, 758
FaqI	GGGAC	1 cut(s)	550
FatI	CATG	2 cut(s)	604, 754
FblI	GTMKAC	1 cut(s)	360
Fnu4HI	GCNGC	4 cut(s)	29, 32, 327, 983
FokI	GGATG	5 cut(s)	20, 89, 776, 848, 959
FriOI	GRGCYC	1 cut(s)	998
Fsp4HI	GCNGC	4 cut(s)	29, 32, 327, 983
FspBI	CTAG	5 cut(s)	386, 440, 446, 498, 587
GluI	GCNGC	4 cut(s)	29, 32, 327, 983
HaeIII	GGCC	3 cut(s)	31, 115, 818
HapII	CCGG	2 cut(s)	236, 342
Hin1II	CATG	2 cut(s)	608, 758
HinfI	GANTC	7 cut(s)	398, 517, 700, 794, 857, 881, 958
HpaII	CCGG	2 cut(s)	236, 342
HphI	GGTGA	4 cut(s)	23, 494, 749, 1117
Hpy166II	GTNNAC	3 cut(s)	361, 611, 708
Hpy188I	TCNGA	6 cut(s)	193, 355, 856, 880, 925, 957
Hpy188III	TCNNGA	9 cut(s)	52, 127, 223, 342, 521, 587, 692, 719, 1066
Hpy8I	GTNNAC	3 cut(s)	361, 611, 708
HpyAV	CCTTC	7 cut(s)	37, 64, 91, 198, 360, 638, 861
HpyCH4III	ACNGT	1 cut(s)	580
HpyF10VI	GCNNNNNNNGC	4 cut(s)	266, 323, 797, 1002
HpyF3I	CTNAG	5 cut(s)	87, 846, 861, 990, 999
Hsp92II	CATG	2 cut(s)	608, 758
KflI	GGGWCCC	1 cut(s)	564
Kpn2I	TCCGGA	1 cut(s)	341
Kzo9I	GATC	4 cut(s)	346, 523, 543, 1129
LmnI	GCTCC	3 cut(s)	164, 265, 502
Lsp1109I	GCAGC	2 cut(s)	313, 994
LweI	GCATC	5 cut(s)	124, 412, 588, 610, 826
MaeI	CTAG	5 cut(s)	386, 440, 446, 498, 587
MaeIII	GTNAC	5 cut(s)	11, 100, 535, 737, 1073
MalI	GATC	4 cut(s)	348, 525, 545, 1131
MboI	GATC	4 cut(s)	346, 523, 543, 1129
MboII	GAAGA	7 cut(s)	191, 431, 675, 797, 816, 1045, 1139
MfeI	CAATTG	1 cut(s)	144
MflI	RGATCY	3 cut(s)	346, 543, 1129
MhlI	GDGCHC	1 cut(s)	998
MlyI	GAGTC	1 cut(s)	890
MmeI	TCCRAC	1 cut(s)	896
MnlI	CCTC	9 cut(s)	59, 67, 150, 205, 271, 388, 688, 781, 829
Mph1103I	ATGCAT	2 cut(s)	603, 841
MroI	TCCGGA	1 cut(s)	341
MroXI	GAANNNNTTC	1 cut(s)	198
MseI	TTAA	5 cut(s)	617, 831, 1116, 1136, 1146
MslI	CAYNNNNRTG	2 cut(s)	618, 945
MspI	CCGG	2 cut(s)	236, 342
MspR9I	CCNGG	2 cut(s)	237, 657
MunI	CAATTG	1 cut(s)	144
MvaI	CCWGG	1 cut(s)	657
MwoI	GCNNNNNNNGC	4 cut(s)	266, 323, 797, 1002
NciI	CCSGG	1 cut(s)	237
NdeII	GATC	4 cut(s)	346, 523, 543, 1129
NlaIII	CATG	2 cut(s)	608, 758
NlaIV	GGNNCC	3 cut(s)	56, 565, 566
NmeAIII	GCCGAG	1 cut(s)	351
NmuCI	GTSAC	4 cut(s)	11, 535, 737, 1073
NotI	GCGGCCGC	1 cut(s)	29
NsiI	ATGCAT	2 cut(s)	603, 841
NspI	RCATGY	1 cut(s)	758
NspV	TTCGAA	1 cut(s)	515
PdmI	GAANNNNTTC	1 cut(s)	198
PfeI	GAWTC	6 cut(s)	398, 517, 700, 794, 857, 958
PkrI	GCNGC	4 cut(s)	30, 33, 328, 984
PleI	GAGTC	1 cut(s)	889
PpsI	GAGTC	1 cut(s)	889
PpuMI	RGGWCCY	2 cut(s)	46, 564
Psp124BI	GAGCTC	1 cut(s)	998
Psp5II	RGGWCCY	2 cut(s)	46, 564
Psp6I	CCWGG	1 cut(s)	655
PspGI	CCWGG	1 cut(s)	655
PspN4I	GGNNCC	3 cut(s)	56, 565, 566
PspPI	GGNCC	4 cut(s)	46, 54, 113, 564
PspPPI	RGGWCCY	2 cut(s)	46, 564
PsrI	GAACNNNNNNTAC	2 cut(s)	897, 929
PstI	CTGCAG	2 cut(s)	40, 715
PsuI	RGATCY	3 cut(s)	346, 543, 1129
RseI	CAYNNNNRTG	2 cut(s)	618, 945
SacI	GAGCTC	1 cut(s)	998
SaqAI	TTAA	5 cut(s)	617, 831, 1116, 1136, 1146
SatI	GCNGC	4 cut(s)	29, 32, 327, 983
Sau3AI	GATC	4 cut(s)	346, 523, 543, 1129
Sau96I	GGNCC	4 cut(s)	46, 54, 113, 564
SchI	GAGTC	1 cut(s)	890
ScrFI	CCNGG	2 cut(s)	237, 657
SduI	GDGCHC	1 cut(s)	998
SfaNI	GCATC	5 cut(s)	124, 412, 588, 610, 826
SfcI	CTRYAG	2 cut(s)	36, 711
SfuI	TTCGAA	1 cut(s)	515
SinI	GGWCC	3 cut(s)	46, 54, 564
SmiI	ATTTAAAT	1 cut(s)	618
SmiMI	CAYNNNNRTG	2 cut(s)	618, 945
SmlI	CTYRAG	1 cut(s)	407
SmoI	CTYRAG	1 cut(s)	407
SsiI	CCGC	3 cut(s)	28, 32, 329
SspI	AATATT	1 cut(s)	473
SspMI	CTAG	5 cut(s)	386, 440, 446, 498, 587
SstI	GAGCTC	1 cut(s)	998
StyD4I	CCNGG	2 cut(s)	235, 655
StyI	CCWWGG	1 cut(s)	1083
SwaI	ATTTAAAT	1 cut(s)	618
TaaI	ACNGT	1 cut(s)	580
TaqI	TCGA	1 cut(s)	515
TauI	GCSGC	2 cut(s)	31, 34
TfiI	GAWTC	6 cut(s)	398, 517, 700, 794, 857, 958
Tru1I	TTAA	5 cut(s)	617, 831, 1116, 1136, 1146
Tru9I	TTAA	5 cut(s)	617, 831, 1116, 1136, 1146
TscAI	CASTG	1 cut(s)	895
TseFI	GTSAC	4 cut(s)	11, 535, 737, 1073
TseI	GCWGC	2 cut(s)	326, 982
Tsp45I	GTSAC	4 cut(s)	11, 535, 737, 1073
TspDTI	ATGAA	4 cut(s)	816, 956, 1046, 1140
TspRI	CASTG	1 cut(s)	895
VpaK11BI	GGWCC	3 cut(s)	46, 54, 564
XapI	RAATTY	5 cut(s)	389, 773, 898, 910, 1060
XbaI	TCTAGA	1 cut(s)	586
XceI	RCATGY	1 cut(s)	758
XmiI	GTMKAC	1 cut(s)	360
XmnI	GAANNNNTTC	1 cut(s)	198
XspI	CTAG	5 cut(s)	386, 440, 446, 498, 587
Zsp2I	ATGCAT	2 cut(s)	603, 841

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.