pycom10g10340

Pollen proteins Ole e I like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0011871
Physical Location & Seq
Forward (+)
13622438 .. 13624246
1809 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1059 bp
ATGTACCTCTTTGAGAGTTGGCATGTAAGAATTGCTTTCACTCCTAGTTCTTCACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATGGATTGGCCGGAGAAATTCTTTTTTGTAGCAATTCTGGTTTTGTTTGTAGCCATTGATGCAGCTCAGGCAAATACAATGGTGAGTGGCACCGTCTTCTGTGACCAATGCAAAGATGGTGAAAGATCCCTCTTTGATTACCCCATCTATGGAGTAAAAGTACAAGTGGCATGTAGTGACAGTAATGGGCAAATCACAATGTCAAGGGAAGAGACTACAAATTGGTTTGGAAACTATGCCATCGGGTTTGATGGGACACCAGATTTGAGTGGCTGTTATGCTCAGATTTCTTCAAGCACAGGGAGTGGCTGTGTGGTTAGTGCTGGTCCTGCTCAAAGTCTTAGACTTGTGTTTAGAATGTTTGACGTGGGGATGTATGTTGTGGACTCTTTGCTCACTCAGCCTGCTCAACCCATGTCATTTTGCCCCAAGTCATCTAATCCTGTGCCTGCACCGGTAACACCGGTTAACCCTCTACCTAAACCAGTGACGCCGGCAAGCCCTCCGCCTTTTAGGCTCCCCCCAATGCCTCGATTGCCTCCACTGCCACCACTGCCCTCGTTGCCTCCAATGCCGCCGATGCCCTTCTTAGAAGCTACAGCATGCCCACATCAACAGTGGACACTACCAGAGCACAAATGCTACTGGAGGGCAGTGAACCCGAACATGAAGGTAGCCGTTATTTTTGGACCGGTGGCGGCTGGGAGATATGGGACTGACCTCACATTGTGGCAAGGCCTACAAGGAAGAGGAGACCCTTATAGGACACTCCTAAGGGAAGGGATCACTGCATTTCTCAACTCCTACAACAGCCTTCAATTTCCTTACAATTCAATTGTTGTGGTTCAGCATTTGAATTGGGGCTTGATGGGCTCCAACAGAAATGTCCTCCTTACAGGATTGAGGTTCATTAGGGCTAATTCAGGTTATGGGAAAGTCCCTTGCAAATTTACTGCTTGCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pollen_Ole_e_I

Protein Analysis

353

Amino Acids

38.6

Weight (kDa)

8.65

Isoelectric Point (pI)

49.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pollen_Ole_e_1 PF01190 59 - 137 2.2e-11 Pollen protein Ole e 1 like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 182
AciI CCGC 3 cut(s) 599, 668, 791
AclWI GGATC 2 cut(s) 213, 884
AcoI YGGCCR 1 cut(s) 101
AcsI RAATTY 2 cut(s) 110, 1040
AcyI GRCGYC 1 cut(s) 584
AdeI CACNNNGTG 1 cut(s) 822
AfaI GTAC 2 cut(s) 5, 255
AfiI CCNNNNNNNGG 1 cut(s) 242
AgeI ACCGGT 3 cut(s) 547, 556, 784
AgsI TTSAA 4 cut(s) 387, 911, 927, 949
AjiI CACGTC 1 cut(s) 460
AluBI AGCT 2 cut(s) 158, 689
AluI AGCT 2 cut(s) 158, 689
Alw21I GWGCWC 1 cut(s) 729
Alw26I GTCTC 2 cut(s) 299, 840
AlwI GGATC 2 cut(s) 213, 884
AoxI GGCC 2 cut(s) 101, 829
ApeKI GCWGC 1 cut(s) 155
ApoI RAATTY 2 cut(s) 110, 1040
ArsI GACNNNNNNTTYG 2 cut(s) 340, 372
AsiGI ACCGGT 3 cut(s) 547, 556, 784
AspS9I GGNCC 2 cut(s) 419, 782
AsuHPI GGTGA 2 cut(s) 187, 224
AvaII GGWCC 2 cut(s) 419, 782
AxyI CCTNAGG 1 cut(s) 866
BanI GGYRCC 1 cut(s) 182
BanII GRGCYC 1 cut(s) 968
BbsI GAAGAC 1 cut(s) 181
Bbv12I GWGCWC 1 cut(s) 729
BbvI GCAGC 1 cut(s) 167
BccI CCATC 5 cut(s) 203, 245, 338, 341, 955
BceAI ACGGC 1 cut(s) 755
BcoDI GTCTC 2 cut(s) 299, 840
BfaI CTAG 1 cut(s) 45
BfmI CTRYAG 1 cut(s) 690
BglI GCCNNNNNGGC 1 cut(s) 607
BisI GCNGC 3 cut(s) 156, 668, 792
BlsI GCNGC 3 cut(s) 157, 669, 793
Bme18I GGWCC 2 cut(s) 419, 782
BmgBI CACGTC 1 cut(s) 460
BmgT120I GGNCC 2 cut(s) 419, 782
BmiI GGNNCC 3 cut(s) 184, 611, 967
BmsI GCATC 2 cut(s) 142, 663
BpiI GAAGAC 1 cut(s) 181
BpmI CTGGAG 1 cut(s) 760
Bpu10I CCTNAGC 1 cut(s) 159
BsaHI GRCGYC 1 cut(s) 584
BsaI GGTCTC 1 cut(s) 840
BsaWI WCCGGW 3 cut(s) 547, 556, 784
BsaXI ACNNNNNCTCC 4 cut(s) 237, 267, 388, 418
Bsc4I CCNNNNNNNGG 1 cut(s) 242
Bse118I RCCGGY 4 cut(s) 547, 556, 586, 784
Bse1I ACTGG 2 cut(s) 578, 743
Bse21I CCTNAGG 1 cut(s) 866
BseGI GGATG 1 cut(s) 471
BseLI CCNNNNNNNGG 1 cut(s) 242
BseMII CTCAG 3 cut(s) 173, 389, 506
BseNI ACTGG 2 cut(s) 578, 743
BseRI GAGGAG 1 cut(s) 858
BseXI GCAGC 1 cut(s) 167
BseYI CCCAGC 1 cut(s) 794
BsgI GTGCAG 1 cut(s) 528
BshFI GGCC 2 cut(s) 103, 831
BshNI GGYRCC 1 cut(s) 182
BshTI ACCGGT 3 cut(s) 547, 556, 784
BsiHKAI GWGCWC 1 cut(s) 729
BsiSI CCGG 5 cut(s) 104, 548, 557, 587, 785
BslFI GGGAC 3 cut(s) 361, 820, 1016
BslI CCNNNNNNNGG 1 cut(s) 242
BsmAI GTCTC 2 cut(s) 299, 840
BsmFI GGGAC 3 cut(s) 361, 820, 1016
BsnI GGCC 2 cut(s) 103, 831
Bso31I GGTCTC 1 cut(s) 840
Bsp1286I GDGCHC 2 cut(s) 729, 968
Bsp143I GATC 2 cut(s) 218, 876
BspACI CCGC 3 cut(s) 599, 668, 791
BspANI GGCC 2 cut(s) 103, 831
BspCNI CTCAG 3 cut(s) 172, 388, 505
BspLI GGNNCC 3 cut(s) 184, 611, 967
BspPI GGATC 2 cut(s) 213, 884
BspT107I GGYRCC 1 cut(s) 182
BspTNI GGTCTC 1 cut(s) 840
BsrFI RCCGGY 4 cut(s) 547, 556, 586, 784
BsrI ACTGG 2 cut(s) 578, 743
BssAI RCCGGY 4 cut(s) 547, 556, 586, 784
BssMI GATC 2 cut(s) 218, 876
BssNI GRCGYC 1 cut(s) 584
Bst4CI ACNGT 3 cut(s) 187, 275, 711
Bst6I CTCTTC 2 cut(s) 297, 835
BstACI GRCGYC 1 cut(s) 584
BstC8I GCNNGC 6 cut(s) 498, 543, 588, 592, 697, 1051
BstDEI CTNAG 6 cut(s) 159, 375, 434, 492, 682, 866
BstF5I GGATG 1 cut(s) 471
BstKTI GATC 2 cut(s) 221, 879
BstMAI GTCTC 2 cut(s) 299, 840
BstMBI GATC 2 cut(s) 218, 876
BstNSI RCATGY 3 cut(s) 26, 267, 699
BstSFI CTRYAG 1 cut(s) 690
BstV1I GCAGC 1 cut(s) 167
BstV2I GAAGAC 1 cut(s) 181
BstX2I RGATCY 1 cut(s) 218
BstYI RGATCY 1 cut(s) 218
Bsu36I CCTNAGG 1 cut(s) 866
BsuRI GGCC 2 cut(s) 103, 831
BtrI CACGTC 1 cut(s) 460
BtsCI GGATG 1 cut(s) 471
BtsI GCAGTG 4 cut(s) 635, 644, 753, 879
BtsIMutI CAGTG 6 cut(s) 585, 635, 644, 716, 753, 879
Cac8I GCNNGC 6 cut(s) 498, 543, 588, 592, 697, 1051
Cfr10I RCCGGY 4 cut(s) 547, 556, 586, 784
Cfr13I GGNCC 2 cut(s) 419, 782
CseI GACGC 1 cut(s) 592
Csp6I GTAC 2 cut(s) 4, 254
CspAI ACCGGT 3 cut(s) 547, 556, 784
CspCI CAANNNNNGTGG 2 cut(s) 915, 950
CviAII CATG 6 cut(s) 23, 94, 264, 508, 696, 760
CviQI GTAC 2 cut(s) 4, 254
DdeI CTNAG 6 cut(s) 159, 375, 434, 492, 682, 866
DpnI GATC 2 cut(s) 220, 878
DpnII GATC 2 cut(s) 218, 876
DraIII CACNNNGTG 1 cut(s) 822
EaeI YGGCCR 1 cut(s) 101
Eam1104I CTCTTC 2 cut(s) 297, 835
EarI CTCTTC 2 cut(s) 297, 835
EciI GGCGGA 1 cut(s) 588
Eco147I AGGCCT 1 cut(s) 831
Eco24I GRGCYC 1 cut(s) 968
Eco31I GGTCTC 1 cut(s) 840
Eco47I GGWCC 2 cut(s) 419, 782
Eco81I CCTNAGG 1 cut(s) 866
EcoT38I GRGCYC 1 cut(s) 968
FaeI CATG 6 cut(s) 26, 97, 267, 511, 699, 763
FalI AAGNNNNNCTT 2 cut(s) 19, 51
FaqI GGGAC 3 cut(s) 361, 820, 1016
FatI CATG 6 cut(s) 22, 93, 263, 507, 695, 759
Fnu4HI GCNGC 3 cut(s) 156, 668, 792
FokI GGATG 1 cut(s) 478
FriOI GRGCYC 1 cut(s) 968
Fsp4HI GCNGC 3 cut(s) 156, 668, 792
FspBI CTAG 1 cut(s) 45
GluI GCNGC 3 cut(s) 156, 668, 792
GsaI CCCAGC 1 cut(s) 798
GsuI CTGGAG 1 cut(s) 760
HaeIII GGCC 2 cut(s) 103, 831
HapII CCGG 5 cut(s) 104, 548, 557, 587, 785
HgaI GACGC 1 cut(s) 592
Hin1I GRCGYC 1 cut(s) 584
Hin1II CATG 6 cut(s) 26, 97, 267, 511, 699, 763
HincII GTYRAC 1 cut(s) 562
HindII GTYRAC 1 cut(s) 562
HinfI GANTC 1 cut(s) 479
HpaI GTTAAC 1 cut(s) 562
HpaII CCGG 5 cut(s) 104, 548, 557, 587, 785
HphI GGTGA 2 cut(s) 187, 224
Hpy166II GTNNAC 4 cut(s) 478, 562, 714, 751
Hpy188I TCNGA 1 cut(s) 378
Hpy8I GTNNAC 4 cut(s) 478, 562, 714, 751
HpyAV CCTTC 4 cut(s) 688, 757, 866, 917
HpyCH4III ACNGT 3 cut(s) 187, 275, 711
HpyCH4IV ACGT 1 cut(s) 459
HpyCH4V TGCA 6 cut(s) 155, 204, 545, 884, 1038, 1053
HpyF3I CTNAG 6 cut(s) 159, 375, 434, 492, 682, 866
HpySE526I ACGT 1 cut(s) 459
Hsp92I GRCGYC 1 cut(s) 584
Hsp92II CATG 6 cut(s) 26, 97, 267, 511, 699, 763
KroI GCCGGC 1 cut(s) 586
KroNI GCCGGC 1 cut(s) 588
KspAI GTTAAC 1 cut(s) 562
Kzo9I GATC 2 cut(s) 218, 876
LmnI GCTCC 2 cut(s) 615, 971
Lsp1109I GCAGC 1 cut(s) 167
LweI GCATC 2 cut(s) 142, 663
MaeI CTAG 1 cut(s) 45
MaeII ACGT 1 cut(s) 459
MaeIII GTNAC 4 cut(s) 194, 269, 550, 580
MalI GATC 2 cut(s) 220, 878
MboI GATC 2 cut(s) 218, 876
MboII GAAGA 5 cut(s) 42, 181, 314, 375, 852
MfeI CAATTG 1 cut(s) 927
MflI RGATCY 1 cut(s) 218
MhlI GDGCHC 2 cut(s) 729, 968
MlyI GAGTC 1 cut(s) 473
MmeI TCCRAC 1 cut(s) 993
MroNI GCCGGC 1 cut(s) 586
MseI TTAA 1 cut(s) 561
MspI CCGG 5 cut(s) 104, 548, 557, 587, 785
MunI CAATTG 1 cut(s) 927
NaeI GCCGGC 1 cut(s) 588
NdeII GATC 2 cut(s) 218, 876
NgoMIV GCCGGC 1 cut(s) 586
NlaIII CATG 6 cut(s) 26, 97, 267, 511, 699, 763
NlaIV GGNNCC 3 cut(s) 184, 611, 967
NmuCI GTSAC 3 cut(s) 194, 269, 580
NspI RCATGY 3 cut(s) 26, 267, 699
PaeI GCATGC 1 cut(s) 699
PceI AGGCCT 1 cut(s) 831
PdiI GCCGGC 1 cut(s) 588
PinAI ACCGGT 3 cut(s) 547, 556, 784
PkrI GCNGC 3 cut(s) 157, 669, 793
PleI GAGTC 1 cut(s) 473
PpsI GAGTC 1 cut(s) 473
PspFI CCCAGC 1 cut(s) 794
PspN4I GGNNCC 3 cut(s) 184, 611, 967
PspPI GGNCC 2 cut(s) 419, 782
PsuI RGATCY 1 cut(s) 218
RsaI GTAC 2 cut(s) 5, 255
RsaNI GTAC 2 cut(s) 4, 254
SaqAI TTAA 1 cut(s) 561
SatI GCNGC 3 cut(s) 156, 668, 792
Sau3AI GATC 2 cut(s) 218, 876
Sau96I GGNCC 2 cut(s) 419, 782
SchI GAGTC 1 cut(s) 473
SduI GDGCHC 2 cut(s) 729, 968
SetI ASST 9 cut(s) 9, 160, 462, 574, 691, 768, 816, 1001, 1021
SfaNI GCATC 2 cut(s) 142, 663
SfcI CTRYAG 1 cut(s) 690
SinI GGWCC 2 cut(s) 419, 782
SphI GCATGC 1 cut(s) 699
SseBI AGGCCT 1 cut(s) 831
SsiI CCGC 3 cut(s) 599, 668, 791
SspMI CTAG 1 cut(s) 45
StuI AGGCCT 1 cut(s) 831
TaaI ACNGT 3 cut(s) 187, 275, 711
TaiI ACGT 1 cut(s) 462
TaqI TCGA 1 cut(s) 625
TatI WGTACW 1 cut(s) 253
TauI GCSGC 2 cut(s) 670, 794
Tru1I TTAA 1 cut(s) 561
Tru9I TTAA 1 cut(s) 561
TscAI CASTG 6 cut(s) 585, 642, 651, 716, 753, 886
TseFI GTSAC 3 cut(s) 194, 269, 580
TseI GCWGC 1 cut(s) 155
Tsp45I GTSAC 3 cut(s) 194, 269, 580
TspDTI ATGAA 2 cut(s) 776, 991
TspRI CASTG 6 cut(s) 585, 642, 651, 716, 753, 886
VpaK11BI GGWCC 2 cut(s) 419, 782
XapI RAATTY 2 cut(s) 110, 1040
XceI RCATGY 3 cut(s) 26, 267, 699
XcmI CCANNNNNNNNNTGG 2 cut(s) 206, 708
XspI CTAG 1 cut(s) 45
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.