pycom10g10720

Cytochrome C biogenesis protein transmembrane region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0009309
Physical Location & Seq
Reverse (-)
14182224 .. 14184852
2629 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1158 bp
ATGGAAAGGCTTCTATCCTCTTCATCCCCAACCCTTTTGAAACTCCATCTCAAACCCTCTCCTCTCCTCAATCGACCCGCCCTTATTGACTCGGCCAAACTCGGTTTTCCCGCTTCACAGCTGCCCAATTTCAGACGGGTCGGCTTGGTTTCCTGCAAACATCAAAACCCATCTCCATTTTCTTCTGGTTCTCATTCTTCATCAGCGCCGTGCAACATTCTTCCGTCTCTATTGTCGAACCAGGCCGGATCGCCAAATGGGTCGGAGCCAAAATCCCAGATTCTCAATCAGATCGCAACCGGGGTTCCTAAGCAGCGCAAGGCCATCCCCACCAGAGCGTTCGTTGCGCTTTCTGCTCTTGTTTTGATCTTAATACAACCAGCTTTTGCACCAGCCGCTTTTGCATCCTTTGAAACTGCAACCAACACTGGTAGCCCAGCTGTTGCTATTGGGGGAAGACTGATCCAGACAGAGTTGCTTAGTAGTGCGTGGACTGGTTTCTTCGCCGGTTGCTTACACACATTATCGGGGCCAGACCACCTAGCTGCTTTGGCTCCACTCTCAATTGGACGTACCCGCATTGAAAGTGCTTTAGTAGGAGCCCTCTGGGGATGTGGCCATGATGCTGGTCAGGTTATCTTTGGCTTAATATTTTTACTACTAAAGGATCGACTTCATATTGAGATTATCCGAACTTGGGGCACGAGAGTTGTGGGCCTTACCCTACTAGTCATTGGTGGTATGGGTATTAAGGAAGCTTCAGAAGTCCCAACTCCTTGTGTTGCCTTAGAGAATGGCGAGTGTGATGTTAGTGTATACGAGTCTCTAGATAACCCCACAGTTGGGAAGAAGAAGATTGGTTTTGCTACTTTTGCCACTGGAATTGTCCACGGGCTGCAGCCAGATGCATTGATGATGGTCTTGCCAGCCCTCGCTTTGCCATCTCGAGTTGCTGGCGCTGCATTCCTGGTTATGTTTTTAATTGGGACCGTAGTTGCAATGGGAAGCTATACTGTCTTTATAGGTTCATGTAGTCAGGCATTAAAGGATCGAGTGCCCAGGATTACAGAGAAACTGACATGGGCTTCTTCCCTGATTGCAATTGCTCTTGGGTTCGCCATCATCATCAGCCAGTTCTTCGGGTATAGCCTGTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DsbD_2

Protein Analysis

386

Amino Acids

40.5

Weight (kDa)

9.33

Isoelectric Point (pI)

39.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DsbD_2 PF13386 213 - 357 4.9e-06 Cytochrome C biogenesis protein transmembrane region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 816
AciI CCGC 4 cut(s) 78, 111, 396, 577
AclWI GGATC 4 cut(s) 256, 457, 675, 1056
AcoI YGGCCR 2 cut(s) 93, 616
AcuI CTGAAG 1 cut(s) 744
AfaI GTAC 1 cut(s) 574
AfiI CCNNNNNNNGG 3 cut(s) 697, 842, 843
AgsI TTSAA 3 cut(s) 40, 413, 584
AhlI ACTAGT 1 cut(s) 727
AjnI CCWGG 3 cut(s) 240, 966, 1058
AluBI AGCT 6 cut(s) 121, 383, 440, 545, 758, 1008
AluI AGCT 6 cut(s) 121, 383, 440, 545, 758, 1008
Alw26I GTCTC 2 cut(s) 231, 828
AlwI GGATC 4 cut(s) 256, 457, 675, 1056
Ama87I CYCGRG 1 cut(s) 945
AoxI GGCC 6 cut(s) 93, 243, 321, 530, 616, 715
ApeKI GCWGC 6 cut(s) 121, 313, 545, 895, 898, 959
Asp700I GAANNNNTTC 1 cut(s) 9
AspLEI GCGC 4 cut(s) 208, 318, 349, 959
AspS9I GGNCC 3 cut(s) 530, 715, 987
AsuC2I CCSGG 1 cut(s) 301
AvaI CYCGRG 1 cut(s) 945
AvaII GGWCC 1 cut(s) 987
BaeGI GKGCMC 2 cut(s) 704, 1059
BalI TGGCCA 1 cut(s) 618
BanII GRGCYC 1 cut(s) 604
BauI CACGAG 1 cut(s) 703
BbsI GAAGAC 1 cut(s) 463
BbvI GCAGC 6 cut(s) 108, 325, 532, 882, 910, 946
BccI CCATC 6 cut(s) 54, 178, 332, 910, 949, 1127
BceAI ACGGC 1 cut(s) 193
BciT130I CCWGG 3 cut(s) 242, 968, 1060
BcnI CCSGG 1 cut(s) 301
BcoDI GTCTC 2 cut(s) 231, 828
BcuI ACTAGT 1 cut(s) 727
BfaI CTAG 3 cut(s) 542, 728, 827
BfmI CTRYAG 1 cut(s) 896
BfoI RGCGCY 2 cut(s) 209, 960
BisI GCNGC 7 cut(s) 122, 314, 396, 546, 896, 899, 960
BlsI GCNGC 7 cut(s) 123, 315, 397, 547, 897, 900, 961
Bme1390I CCNGG 4 cut(s) 242, 301, 968, 1060
Bme18I GGWCC 1 cut(s) 987
BmeT110I CYCGRG 1 cut(s) 945
BmgT120I GGNCC 3 cut(s) 530, 715, 987
BmiI GGNNCC 6 cut(s) 267, 306, 531, 555, 601, 988
BmrFI CCNGG 4 cut(s) 242, 301, 968, 1060
BmsI GCATC 3 cut(s) 413, 613, 895
BpiI GAAGAC 1 cut(s) 463
Bpu10I CCTNAGC 1 cut(s) 309
BpuMI CCSGG 1 cut(s) 301
BsaJI CCNNGG 3 cut(s) 300, 889, 1058
Bsc4I CCNNNNNNNGG 3 cut(s) 697, 842, 843
Bse118I RCCGGY 1 cut(s) 506
Bse1I ACTGG 4 cut(s) 433, 499, 883, 1132
Bse3DI GCAATG 1 cut(s) 1005
BseBI CCWGG 3 cut(s) 242, 968, 1060
BseDI CCNNGG 3 cut(s) 300, 889, 1058
BseGI GGATG 4 cut(s) 23, 324, 404, 617
BseLI CCNNNNNNNGG 3 cut(s) 697, 842, 843
BseMI GCAATG 1 cut(s) 1005
BseNI ACTGG 4 cut(s) 433, 499, 883, 1132
BseRI GAGGAG 2 cut(s) 51, 56
BseSI GKGCMC 2 cut(s) 704, 1059
BseXI GCAGC 6 cut(s) 108, 325, 532, 882, 910, 946
BseYI CCCAGC 1 cut(s) 436
BshFI GGCC 6 cut(s) 95, 245, 323, 532, 618, 717
BsiHKCI CYCGRG 1 cut(s) 945
BsiSI CCGG 3 cut(s) 246, 300, 507
BslFI GGGAC 2 cut(s) 752, 1000
BslI CCNNNNNNNGG 3 cut(s) 697, 842, 843
BsmAI GTCTC 2 cut(s) 231, 828
BsmBI CGTCTC 1 cut(s) 231
BsmFI GGGAC 2 cut(s) 752, 1000
BsmI GAATGC 1 cut(s) 962
BsnI GGCC 6 cut(s) 95, 245, 323, 532, 618, 717
BsoBI CYCGRG 1 cut(s) 945
Bsp1286I GDGCHC 3 cut(s) 604, 704, 1059
Bsp143I GATC 6 cut(s) 248, 291, 366, 462, 667, 1048
BspACI CCGC 4 cut(s) 78, 111, 396, 577
BspANI GGCC 6 cut(s) 95, 245, 323, 532, 618, 717
BspLI GGNNCC 6 cut(s) 267, 306, 531, 555, 601, 988
BspMAI CTGCAG 1 cut(s) 900
BspPI GGATC 4 cut(s) 256, 457, 675, 1056
BsrDI GCAATG 1 cut(s) 1005
BsrFI RCCGGY 1 cut(s) 506
BsrI ACTGG 4 cut(s) 433, 499, 883, 1132
BssAI RCCGGY 1 cut(s) 506
BssECI CCNNGG 3 cut(s) 300, 889, 1058
BssMI GATC 6 cut(s) 248, 291, 366, 462, 667, 1048
BssNAI GTATAC 1 cut(s) 817
BssSI CACGAG 1 cut(s) 703
Bst1107I GTATAC 1 cut(s) 817
Bst2BI CACGAG 1 cut(s) 703
Bst2UI CCWGG 3 cut(s) 242, 968, 1060
Bst4CI ACNGT 3 cut(s) 841, 991, 1015
Bst6I CTCTTC 1 cut(s) 25
BstC8I GCNNGC 2 cut(s) 927, 955
BstDEI CTNAG 3 cut(s) 309, 479, 787
BstDSI CCRYGG 1 cut(s) 889
BstF5I GGATG 4 cut(s) 23, 324, 404, 617
BstH2I RGCGCY 2 cut(s) 209, 960
BstHHI GCGC 4 cut(s) 208, 318, 349, 959
BstKTI GATC 6 cut(s) 251, 294, 369, 465, 670, 1051
BstMAI GTCTC 2 cut(s) 231, 828
BstMBI GATC 6 cut(s) 248, 291, 366, 462, 667, 1048
BstMWI GCNNNNNNNGC 7 cut(s) 344, 353, 395, 401, 551, 872, 959
BstNI CCWGG 3 cut(s) 242, 968, 1060
BstSCI CCNGG 4 cut(s) 240, 299, 966, 1058
BstSFI CTRYAG 1 cut(s) 896
BstSLI GKGCMC 2 cut(s) 704, 1059
BstV1I GCAGC 6 cut(s) 108, 325, 532, 882, 910, 946
BstV2I GAAGAC 1 cut(s) 463
BstXI CCANNNNNNTGG 1 cut(s) 626
BstZ17I GTATAC 1 cut(s) 817
BsuRI GGCC 6 cut(s) 95, 245, 323, 532, 618, 717
BtgI CCRYGG 1 cut(s) 889
BtsCI GGATG 4 cut(s) 23, 324, 404, 617
BtsIMutI CAGTG 2 cut(s) 426, 876
Cac8I GCNNGC 2 cut(s) 927, 955
CfoI GCGC 4 cut(s) 208, 318, 349, 959
Cfr10I RCCGGY 1 cut(s) 506
Cfr13I GGNCC 3 cut(s) 530, 715, 987
Csp6I GTAC 1 cut(s) 573
CspCI CAANNNNNGTGG 2 cut(s) 865, 900
CviAII CATG 3 cut(s) 620, 1029, 1080
CviQI GTAC 1 cut(s) 573
DdeI CTNAG 3 cut(s) 309, 479, 787
DpnI GATC 6 cut(s) 250, 293, 368, 464, 669, 1050
DpnII GATC 6 cut(s) 248, 291, 366, 462, 667, 1048
EaeI YGGCCR 2 cut(s) 93, 616
Eam1104I CTCTTC 1 cut(s) 25
EarI CTCTTC 1 cut(s) 25
Eco24I GRGCYC 1 cut(s) 604
Eco47I GGWCC 1 cut(s) 987
Eco57I CTGAAG 1 cut(s) 744
Eco88I CYCGRG 1 cut(s) 945
EcoRII CCWGG 3 cut(s) 240, 966, 1058
EcoT22I ATGCAT 1 cut(s) 910
EcoT38I GRGCYC 1 cut(s) 604
Esp3I CGTCTC 1 cut(s) 231
FaeI CATG 3 cut(s) 623, 1032, 1083
FaqI GGGAC 2 cut(s) 752, 1000
FatI CATG 3 cut(s) 619, 1028, 1079
FauI CCCGC 3 cut(s) 85, 118, 584
FblI GTMKAC 1 cut(s) 816
Fnu4HI GCNGC 7 cut(s) 122, 314, 396, 546, 896, 899, 960
FokI GGATG 4 cut(s) 10, 311, 391, 624
FriOI GRGCYC 1 cut(s) 604
Fsp4HI GCNGC 7 cut(s) 122, 314, 396, 546, 896, 899, 960
FspBI CTAG 3 cut(s) 542, 728, 827
GlaI GCGC 4 cut(s) 207, 317, 348, 958
GluI GCNGC 7 cut(s) 122, 314, 396, 546, 896, 899, 960
GsaI CCCAGC 1 cut(s) 440
HaeII RGCGCY 2 cut(s) 209, 960
HaeIII GGCC 6 cut(s) 95, 245, 323, 532, 618, 717
HapII CCGG 3 cut(s) 246, 300, 507
HhaI GCGC 4 cut(s) 208, 318, 349, 959
Hin1II CATG 3 cut(s) 623, 1032, 1083
Hin6I GCGC 4 cut(s) 206, 316, 347, 957
HinP1I GCGC 4 cut(s) 206, 316, 347, 957
HindIII AAGCTT 1 cut(s) 756
HinfI GANTC 3 cut(s) 89, 280, 821
HpaII CCGG 3 cut(s) 246, 300, 507
Hpy166II GTNNAC 3 cut(s) 492, 817, 889
Hpy188I TCNGA 5 cut(s) 134, 265, 291, 692, 763
Hpy188III TCNNGA 3 cut(s) 466, 827, 945
Hpy8I GTNNAC 3 cut(s) 492, 817, 889
HpyCH4III ACNGT 3 cut(s) 841, 991, 1015
HpyCH4IV ACGT 1 cut(s) 571
HpyF10VI GCNNNNNNNGC 7 cut(s) 344, 353, 395, 401, 551, 872, 959
HpyF3I CTNAG 3 cut(s) 309, 479, 787
HpySE526I ACGT 1 cut(s) 571
Hsp92II CATG 3 cut(s) 623, 1032, 1083
HspAI GCGC 4 cut(s) 206, 316, 347, 957
Kzo9I GATC 6 cut(s) 248, 291, 366, 462, 667, 1048
LmnI GCTCC 3 cut(s) 265, 559, 599
Lsp1109I GCAGC 6 cut(s) 108, 325, 532, 882, 910, 946
LweI GCATC 3 cut(s) 413, 613, 895
MaeI CTAG 3 cut(s) 542, 728, 827
MaeII ACGT 1 cut(s) 571
MalI GATC 6 cut(s) 250, 293, 368, 464, 669, 1050
MboI GATC 6 cut(s) 248, 291, 366, 462, 667, 1048
MfeI CAATTG 2 cut(s) 564, 1101
MhlI GDGCHC 3 cut(s) 604, 704, 1059
MlsI TGGCCA 1 cut(s) 618
MluCI AATT 5 cut(s) 127, 564, 882, 981, 1101
MluNI TGGCCA 1 cut(s) 618
MlyI GAGTC 2 cut(s) 83, 830
MmeI TCCRAC 1 cut(s) 243
MnlI CCTC 6 cut(s) 28, 67, 72, 77, 614, 941
Mox20I TGGCCA 1 cut(s) 618
Mph1103I ATGCAT 1 cut(s) 910
MroXI GAANNNNTTC 1 cut(s) 9
MscI TGGCCA 1 cut(s) 618
MseI TTAA 5 cut(s) 371, 647, 750, 980, 1043
Msp20I TGGCCA 1 cut(s) 618
MspA1I CMGCKG 2 cut(s) 121, 440
MspI CCGG 3 cut(s) 246, 300, 507
MspR9I CCNGG 4 cut(s) 242, 301, 968, 1060
MunI CAATTG 2 cut(s) 564, 1101
Mva1269I GAATGC 1 cut(s) 962
MvaI CCWGG 3 cut(s) 242, 968, 1060
MwoI GCNNNNNNNGC 7 cut(s) 344, 353, 395, 401, 551, 872, 959
NciI CCSGG 1 cut(s) 301
NdeII GATC 6 cut(s) 248, 291, 366, 462, 667, 1048
NlaIII CATG 3 cut(s) 623, 1032, 1083
NlaIV GGNNCC 6 cut(s) 267, 306, 531, 555, 601, 988
NmeAIII GCCGAG 1 cut(s) 71
NsiI ATGCAT 1 cut(s) 910
PaeR7I CTCGAG 1 cut(s) 945
PctI GAATGC 1 cut(s) 962
PdmI GAANNNNTTC 1 cut(s) 9
PfeI GAWTC 1 cut(s) 280
PkrI GCNGC 7 cut(s) 123, 315, 397, 547, 897, 900, 961
PleI GAGTC 2 cut(s) 83, 829
PpsI GAGTC 2 cut(s) 83, 829
Psp6I CCWGG 3 cut(s) 240, 966, 1058
PspFI CCCAGC 1 cut(s) 436
PspGI CCWGG 3 cut(s) 240, 966, 1058
PspN4I GGNNCC 6 cut(s) 267, 306, 531, 555, 601, 988
PspPI GGNCC 3 cut(s) 530, 715, 987
PstI CTGCAG 1 cut(s) 900
PvuII CAGCTG 2 cut(s) 121, 440
RsaI GTAC 1 cut(s) 574
RsaNI GTAC 1 cut(s) 573
SaqAI TTAA 5 cut(s) 371, 647, 750, 980, 1043
SatI GCNGC 7 cut(s) 122, 314, 396, 546, 896, 899, 960
Sau3AI GATC 6 cut(s) 248, 291, 366, 462, 667, 1048
Sau96I GGNCC 3 cut(s) 530, 715, 987
SchI GAGTC 2 cut(s) 83, 830
ScrFI CCNGG 4 cut(s) 242, 301, 968, 1060
SduI GDGCHC 3 cut(s) 604, 704, 1059
SfaNI GCATC 3 cut(s) 413, 613, 895
SfcI CTRYAG 1 cut(s) 896
Sfr274I CTCGAG 1 cut(s) 945
SinI GGWCC 1 cut(s) 987
SlaI CTCGAG 1 cut(s) 945
SmlI CTYRAG 1 cut(s) 945
SmoI CTYRAG 1 cut(s) 945
SpeI ACTAGT 1 cut(s) 727
Sse9I AATT 5 cut(s) 127, 564, 882, 981, 1101
SsiI CCGC 4 cut(s) 78, 111, 396, 577
SspI AATATT 1 cut(s) 651
SspMI CTAG 3 cut(s) 542, 728, 827
StyD4I CCNGG 4 cut(s) 240, 299, 966, 1058
TaaI ACNGT 3 cut(s) 841, 991, 1015
TaiI ACGT 1 cut(s) 574
TaqI TCGA 5 cut(s) 73, 236, 670, 946, 1051
TasI AATT 5 cut(s) 127, 564, 882, 981, 1101
TauI GCSGC 1 cut(s) 398
TfiI GAWTC 1 cut(s) 280
Tru1I TTAA 5 cut(s) 371, 647, 750, 980, 1043
Tru9I TTAA 5 cut(s) 371, 647, 750, 980, 1043
TscAI CASTG 2 cut(s) 433, 883
TseI GCWGC 6 cut(s) 121, 313, 545, 895, 898, 959
TspDTI ATGAA 4 cut(s) 12, 189, 665, 1017
TspGWI ACGGA 1 cut(s) 213
TspRI CASTG 2 cut(s) 433, 883
VpaK11BI GGWCC 1 cut(s) 987
XbaI TCTAGA 1 cut(s) 826
XhoI CTCGAG 1 cut(s) 945
XmiI GTMKAC 1 cut(s) 816
XmnI GAANNNNTTC 1 cut(s) 9
XspI CTAG 3 cut(s) 542, 728, 827
Zsp2I ATGCAT 1 cut(s) 910
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.