Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0002955

Physical Location & Seq

Genomic Coordinates Forward (+)

17496496 .. 17505863

Gene Structure 9368 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4869 bp

ATGTGTACTACTACAAGGAACGCTGATAATAGAAATATTATCGAATCATCAGGTGTGGATGGGACACAAAATCCACCTGGTGGCTTAATGGTACAAGAAGATAAGGAAACCAAAGCTGTTGATAGTGGTGCTATTGTTAATGATAATCAGGCTTCTGTTTGTCAAAACAACTCTGGGAATAGGGAAGTCAAAGTTGAGGGAGACATAAGTGAAAGTATATCTGGGTTGCGTAATGAAGTTAAGTTCCAATCAAATGTTGAGGGAGAACAACCAAGTGACCCTTTTATGTCAGAAGCTGATAAGGTGGATGTAGCTTTGGATAATGGTTCCAACATCAACAAAGAGAACTTTTGCACTGGCATATCCCAGGGTCCTCAAGATTCATCAATGCATGTGGTTACTGAGACTGCGTTGTCAGGGAGAGATACTGCTGCAGGTTCTGACTGTCTGACTCCTGGAGTTTACTTGAAAGTGATAGACAAGTCACAAGAAGATTCTATTCTGGAAGAGGCTCGAATGATAGAGGCTAAGCGTAAGAGGATTGCTGAATTATCAGTTCGTTCTTTACCATCGGAGAATCGCCGAAAGTCTCAGTGGGATTTTGTCCTCGAGGAAATGGCTTGGTTGGCAAATGATTTTGCGCAGGAACGTCTTTGGAAGCTTACTGCCGCTGCGCAAATATGTCATCGTGCTGCTTTTGCTTCTCGGTTGAAAATTGAATCCCAACATCAACATTGGGAGCTAACAAAAGTGGCTCATGACCTGGCAAAGGCTGTCAACCAATTTTGGGTTTCAGCTGAGACCCTTTTGAAGGGTGATGATTCAAGCTCTTGTCAAAAGGACTGTAACTATAATTTGGTTGAATCAATGAGGATTGAAAGGAACAAAACTTCCAAAGACAAGAATGGGGAACCAAATATGGAGCCAATCAAAGATTTGGAGCCACAGCATCCCCAAAAAGATCTTTCACTTTCAGTGCAGGGATATGCAGTGAGATTTTTGAAGTATAACAACTCTCTGCGTCCTGGCCTTCAAGCACAAGCACCTCCTACTCCTGAGAGAATTTCTGATTTAGGCATTACAGAAATGTCGTGGGAGGATCATCTTACAGAGGAAAACCTCTTTTATGCAGTTCCCTCTGGTGCAATGGAAACCTATAGAAAATCAATTGAATCTCATTTGGTTCAGTTTGAGAGAACTGTCAGTAGCATGCAAGAGGAGGTTGAGACATCTATGTATGATGCAGGAGCGGAGTTTGGTTTTCAAGAGACTGTATATGATGAGGATGAAGGAGAAACAAGCACCTATTATTTGCCTGGAGCATTTGAAGGTAGCAGGTCATTAAAATCTAACCAGAAGAAACGAAGGAACTTGAAGTTACATGCTTCTAGGTCATATGAAGGAGCTGATCTGCCTTACGGGAACTGCACGACTGCAACTCAGGAGTCCATGTCGATGGGGAAAAGGCCTGCTAGTCTCAATGTTGGTTCAATTCCAACAAAACGCATGCGCACTGCTTCCAGGCAGAGGGTCGTTAGTCCATTTGGTGCTGGGCCTGCTGGGAATGTTCAGGCCCCGAATAAGACAGATGCTTCAAGTGGTGATACTAATTCTTTTCAGGATGATCGGAGTACTTTACATGGCGGATCTCAGTTCCAGAAAAGTATGGAGGTTGAGTCTCTTGGGGACTTTGAAAAGCAGTTACCATATGACTATGCAGAAACATCAATGAAGCCTAAAAAGAAGAAGGCCAAACATCTGGGTTCTACCTATGATCCAGGATGGCAACTGGAATCTGCTATCCTGAACGAACAGCAGAGGGATCATTCCAAAAAGGGATTGGAGGGTCATCATTTTGATTCCAATGGAACAATTGGTTTATATGGGCAACATACGGCCAAGAAGCCAAAGATATTAAAGCAATCTCTAGATAATACTTATGACAGTATTACTCCAATGCCTGGGTCCAATCCTTCTCCAGTGGCATCCCAAATGAGTAATATGTCCAATACCAGTAAATTTATTAAGTTGATTGGTGGTCGAGATAGGGGACGGAAAACTAAATCACTAAAGATGTCTGCTGGGCAGCCAGGTTCTGGAGGTCCATGGTCCCTTTTTGAAGAACATGAGGCACTTGTTGTTCTTGTACATGATATGGGCCCAAATTGGGAACTCATAAGTGATGCAATCAACAGCACACTGCACTTGAAGTGTATTTTTCGCAAGCCTAAAGAGTGCAAGGAGCGTCACAAAATATTAATGGATATGAATTCTGGTGATGGGGCTGATAGTGCTGAAGATCCTGGATCTTCTCAGCCTTATCCATCTACAATACCGGGCATTCCGAAGGGCAGTGCCAGGCAATTATTTCAACGCTTGCAAGAGCCCATGGAAGAGGATGTTCTCAAGTCTCATTTTGAGAAAATAATTAAGATTGGTCAGAAGCATCATTATCGGAGGTGTCAGAATGATAACCAGGATCTGAAACAAGTAACGACTGTCCACAATTCTCATGTTATGGCCCTTTCCCAAGTCTGTCCAAATAACTTGAATGGAGGTGTTCTAACTCCCCTGGATTTGTGTGATACCACTTCATCAAGCTCAGATGTCCTTGGGTACCAAGGCTCTCATTCTAGTGGTTTAGCAATGTCAAATCAGGGTGGGATGGCGTCACTACTTCCTTCGGGGGCAAATGTCTCAATACAGGGATCTTCTGGTATGGTTCTTGGAAGCAACTTGCCATCCCCGTCTGGTCCACTCAGTGCCAATGTCAGAGATGGTAGATACAGTAGTCCAAGAACATCTTCATTGCCTGTCGACGAGCAGCAAAGAATGCAGCACTACAATCAAATGTTGTCAGGTAGAAACATTCAGCAGTCTGGCTTGTCTGTGCCTGGAGCTCTTCCAGGAACTGATCGTGGAGTTCGTATAGTTCCTGGTGGAAATGGTATGGGCATGATGTGTGGGATGAGCAGAGGCATGCCAACGTCAAGGCCAGGGTTTCACGGGATGACTTCACCATCTATGCTAAATTCTGGGAGTATGCTTTCATCCAGTATGGTGGGGATACCAAGCCCTGTAAATATGCACTCTGGAGCTGGTTCTGGTCAGGGAAACTTGATGATAAGACCCCGTGATGCTTTGCATATGATGCGGCCTGGCCATAATCCGGAGCATCAAAGGCAACTTATGGTTCCAGAACTTCAAATGCAGGTCACGCAAGGGAATGGCCAAGGTGTTGCTCCATTCAATGTGCTGAGTTCTGGTTTTCCTAATCAGACAACTCTGCCATCTTCTCAAACATATCCCGGCCATACTCACCAGCAGCATCAGATATCCCCGCAACAGTCCCATGCACTCAGCAACCCTCATAACCCTCATCTTCAAGGCCCGAATCATGCTACGGGGCCGCAGCAGCAAGCCTATGCCAACCGTGTTGTGAAAGATAGGCCGTCGCAACAGCGGTATTTGCAGCAACAGCAACAGTTTTCTGCATCTAATTCTTTGGTGCCACACATCCAGACGCAGGCTCAACTTCCCATGTCATCAACTTTGCAAAATAGTTCCCAACTTCAGTTGCAAAATTCACCTCACCCGGTACCTATGTCCCCTATGACACCATCCTCCCCAAGGACTCCCGTGTCATCCCAGCACCAGCAGAAACATCATCTGCCATCCCACGGCCTTAGCCGGAATCCTGGTGCTAGTGGGATGGCCAATCAGATGGGGAAGCAACGACAAAGACAACCACAGCAGCACCATCTTCAACAATCTAATAGGCACCACCCTCAACAGCGGCAACTTACGCAGTCTCAGCAGCAGGCTAAACTTTCGAAGGGAATGGGAAGAGGCAATTCAATGGTGCATCAGAACCTCTCCATTGATCGTGCAAACCTCTCTATTGATCCTTCTCAACTTAATGGGCTTATGCCTCCAGGAAGCCAAGCTCTTGAGAAAGGAGAACAAATCATGCAGTTGATGCAAGGTCAAGGTGCATATTCTGGGTCTGGCCTTAACCCAGTAACATCAAAACCATTGGTCCCCCAATCAGCAAACCATTCTCAGTTGCAGCAAAAGTTACTTTCTAGTGCACCGACCCCTTCATCAAACCAACTCCAGCAAATGCCTTCTCATTCTGATAATATCACTCAAGGCCAGGTTCCACCAGTTTCTTCTAGTCATATGATATCTGCTTCACATCAAACTGTCTCTCCATCAGGTATGGCTTCCAACCACCAGCAAGTGCAGCCGCAGTCACAGCCACAGCCACAGCCACAGCAACAACAAAAGCAAGCTAATCAAACTCAGCCTTATGTTCAGAGAGTTGTGCAGCACAATCGCCAAGTGAACTCAGAGATTCCAAATAAGTCTCAAAATGATGCAACTCAAGCTGATGAGCAGCCTGTAAATGGTGATTCGCAGGTGGGTGTGAGCATGGTGATTCCTCAGTCCTGTACTGATTCATCTAGTGTAGTGCCATCATCAGAAGCAGTTTATGATGCTAACATGCCGAATTCAACCGCTCTAGTGGGTCCTGTTGGGAGCCTTGCACAAACTAATACTTCTGGGAATGTGCCTGGGCCACCTATTAGTCAAGGGTTAGGCCCAAGAAAGTTATCTGGTAACTTGCTCTCTCATGGACATAATGTTGGAGCACAGTGGCAGCAGCAGCAGCTACTGCAGCGGTCTCCTTCACTGCCATCCCCATCCCAACAACAGTACCAGCAACAAGAACAACAGCAGCAGCAGGAACAAGAGCCACCCCATCATCAACTGACTCTGCAACAGCAGTCTCATCAGCAACTGCAGCATCTGCAAGCAGGGCAAGGAAGTTTGTATATGATGTCTGGTAATTCAACACCAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000123 GO:0000228 GO:0000785 GO:0000790 GO:0000812 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016569 GO:0016570 GO:0016573 GO:0016604 GO:0016607 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0031248 GO:0031974 GO:0031981 GO:0032991 GO:0035267 GO:0036211 GO:0043170 GO:0043189 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043543 GO:0043967 GO:0043968 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0051276 GO:0070013 GO:0070603 GO:0071704 GO:0071840 GO:0097346 GO:1901564 GO:1902493 GO:1902494 GO:1902562 GO:1904949 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSA Myb_DNA-bind_6

Protein Analysis

1623

Amino Acids

177.22

Weight (kDa)

7.07

Isoelectric Point (pI)

60.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSA	PF07529	192 - 227	4e-07	HSA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002955)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24870 AT3G24870 AT3G24870 AT3G24870 AT3G24880 AT3G24880 AT3G24880
fragaria_vesca	FvH4_2g18860 FvH4_2g18860 FvH4_2g18860 FvH4_2g18860 FvH4_2g18860 FvH4_2g18860 FvH4_2g18860 FvH4_2g18860 FvH4_2g18860
malus_domestica	MD05G1174400.v1.1 MD10G1163500.v1.1
prunus_persica	Prupe.8G201800_v2.0.a1 Prupe.8G201800_v2.0.a1 Prupe.8G201800_v2.0.a1 Prupe.8G201800_v2.0.a1
pyrus_communis	pycom05g16120 pycom10g14100
rosa_chinensis	RchiOBHm_Chr6g0284671
rosa_laevigata	RLG00000012732
rosa_multiflora	Rmu_co8337863.1_g000001 Rmu_sc0007474.1_g000006
rosa_roxburghii	Rroxscaffold_7G00184490
rosa_rugosa	Rorug06G0165200 Rorug06G0165200 Rorug06G0165300 Rorug06G0165400
rosa_samantha	Rh6AG278300 Rh6BG278300 Rh6CG280600 Rh6DG273300
rosa_wichuraiana	Rw6G023920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	4411
AasI	GACNNNNNNGTC	2 cut(s)	412, 3640
AbsI	CCTCGAGG	1 cut(s)	608
Acc16I	TGCGCA	3 cut(s)	642, 675, 1511
Acc36I	ACCTGC	4 cut(s)	425, 1326, 3202, 4411
Acc65I	GGTACC	2 cut(s)	2616, 3598
AccB1I	GGYRCC	4 cut(s)	2616, 3508, 3598, 3780
AccB7I	CCANNNNNTGG	3 cut(s)	80, 1961, 2096
AccBSI	CCGCTC	2 cut(s)	1250, 4523
AccI	GTMKAC	1 cut(s)	2817
AccIII	TCCGGA	1 cut(s)	3169
AclWI	GGATC	9 cut(s)	1107, 1654, 1769, 1830, 2294, 2314, 2487, 2716, 3899
AcoI	YGGCCR	5 cut(s)	1896, 3160, 3229, 3310, 3714
AcsI	RAATTY	6 cut(s)	1062, 2018, 2269, 3031, 3583, 4513
AcuI	CTGAAG	2 cut(s)	2316, 3557
AcyI	GRCGYC	1 cut(s)	2669
AdeI	CACNNNGTG	2 cut(s)	80, 2762
AfaI	GTAC	8 cut(s)	7, 93, 1633, 2148, 2618, 3600, 4456, 4721
AjuI	GAANNNNNNNTTGG	2 cut(s)	2788, 2820
AloI	GAACNNNNNNTCC	2 cut(s)	875, 907
Alw21I	GWGCWC	3 cut(s)	2902, 4093, 4657
Alw44I	GTGCAC	1 cut(s)	4089
AlwI	GGATC	9 cut(s)	1107, 1654, 1769, 1830, 2294, 2314, 2487, 2716, 3899
AlwNI	CAGNNNCTG	8 cut(s)	296, 440, 2096, 2482, 2912, 4678, 4804, 4813
Ama87I	CYCGRG	1 cut(s)	608
Aor13HI	TCCGGA	1 cut(s)	3169
ApaI	GGGCCC	1 cut(s)	2162
ApaLI	GTGCAC	1 cut(s)	4089
ApoI	RAATTY	6 cut(s)	1062, 2018, 2269, 3031, 3583, 4513
AseI	ATTAAT	1 cut(s)	2258
Asp700I	GAANNNNTTC	1 cut(s)	2803
Asp718I	GGTACC	2 cut(s)	2616, 3598
AspLEI	GCGC	3 cut(s)	643, 676, 1512
AsuC2I	CCSGG	3 cut(s)	2337, 3309, 3596
AsuHPI	GGTGA	9 cut(s)	827, 1613, 2288, 3009, 3311, 3579, 3584, 4424, 4450
AsuII	TTCGAA	1 cut(s)	3833
AvaI	CYCGRG	1 cut(s)	608
AvaII	GGWCC	7 cut(s)	371, 1965, 2102, 2109, 2753, 4039, 4532
BaeGI	GKGCMC	2 cut(s)	2162, 4093
BaeI	ACNNNNGTAYC	6 cut(s)	2776, 2809, 3590, 3623, 4703, 4736
BalI	TGGCCA	3 cut(s)	3162, 3231, 3716
BanI	GGYRCC	4 cut(s)	2616, 3508, 3598, 3780
BanII	GRGCYC	3 cut(s)	2162, 2388, 2902
Bbv12I	GWGCWC	3 cut(s)	2902, 4093, 4657
BceAI	ACGGC	3 cut(s)	1911, 3436, 3697
BcgI	CGANNNNNNTGC	4 cut(s)	2435, 2469, 4319, 4353
BciVI	GTATCC	1 cut(s)	3060
BcnI	CCSGG	3 cut(s)	2337, 3309, 3596
BfaI	CTAG	9 cut(s)	1389, 1473, 1928, 2634, 3705, 4086, 4176, 4467, 4526
BfmI	CTRYAG	4 cut(s)	432, 1156, 4679, 4805
BfuAI	ACCTGC	4 cut(s)	425, 1326, 3202, 4411
BfuI	GTATCC	1 cut(s)	3060
BglII	AGATCT	1 cut(s)	961
BlpI	GCTNAGC	1 cut(s)	528
BmcAI	AGTACT	1 cut(s)	1633
Bme18I	GGWCC	7 cut(s)	371, 1965, 2102, 2109, 2753, 4039, 4532
BmeT110I	CYCGRG	1 cut(s)	608
BmrI	ACTGGG	1 cut(s)	4013
BmuI	ACTGGG	1 cut(s)	4013
BpmI	CTGGAG	8 cut(s)	477, 1338, 1962, 2118, 2916, 3114, 3918, 4100
Bpu10I	CCTNAGC	1 cut(s)	3686
Bpu1102I	GCTNAGC	1 cut(s)	528
Bpu14I	TTCGAA	1 cut(s)	3833
BpuEI	CTTGAG	5 cut(s)	360, 2390, 3971, 4134, 4371
BpuMI	CCSGG	3 cut(s)	2337, 3309, 3596
BsaHI	GRCGYC	1 cut(s)	2669
BsaI	GGTCTC	2 cut(s)	794, 4692
BsaWI	WCCGGW	1 cut(s)	3169
BsaXI	ACNNNNNCTCC	6 cut(s)	1436, 1466, 1661, 1691, 4195, 4225
Bse1I	ACTGG	7 cut(s)	361, 1794, 1979, 2013, 3054, 4019, 4166
Bse3DI	GCAATG	3 cut(s)	1152, 2652, 2807
BseAI	TCCGGA	1 cut(s)	3169
BseMI	GCAATG	3 cut(s)	1152, 2652, 2807
BseNI	ACTGG	7 cut(s)	361, 1794, 1979, 2013, 3054, 4019, 4166
BseRI	GAGGAG	1 cut(s)	1232
BseSI	GKGCMC	2 cut(s)	2162, 4093
BseYI	CCCAGC	4 cut(s)	1550, 1559, 2081, 3648
BsgI	GTGCAG	5 cut(s)	998, 1411, 2186, 4265, 4349
BshNI	GGYRCC	4 cut(s)	2616, 3508, 3598, 3780
BsiHKAI	GWGCWC	3 cut(s)	2902, 4093, 4657
BsiHKCI	CYCGRG	1 cut(s)	608
BsiSI	CCGG	5 cut(s)	2336, 3170, 3309, 3596, 3691
BslFI	GGGAC	7 cut(s)	76, 1700, 2064, 2095, 3334, 3592, 4025
BsmFI	GGGAC	7 cut(s)	76, 1700, 2064, 2095, 3334, 3592, 4025
BsmI	GAATGC	2 cut(s)	2340, 2838
Bso31I	GGTCTC	2 cut(s)	794, 4692
BsoBI	CYCGRG	1 cut(s)	608
Bsp119I	TTCGAA	1 cut(s)	3833
Bsp120I	GGGCCC	1 cut(s)	2158
Bsp1286I	GDGCHC	5 cut(s)	2162, 2388, 2902, 4093, 4657
Bsp13I	TCCGGA	1 cut(s)	3169
Bsp1407I	TGTACA	1 cut(s)	2146
Bsp1720I	GCTNAGC	1 cut(s)	528
Bsp19I	CCATGG	2 cut(s)	2105, 2388
BspEI	TCCGGA	1 cut(s)	3169
BspHI	TCATGA	1 cut(s)	757
BspMAI	CTGCAG	3 cut(s)	436, 4683, 4809
BspMI	ACCTGC	4 cut(s)	425, 1326, 3202, 4411
BspPI	GGATC	9 cut(s)	1107, 1654, 1769, 1830, 2294, 2314, 2487, 2716, 3899
BspQI	GCTCTTC	1 cut(s)	2907
BspT104I	TTCGAA	1 cut(s)	3833
BspT107I	GGYRCC	4 cut(s)	2616, 3508, 3598, 3780
BspTNI	GGTCTC	2 cut(s)	794, 4692
BsrBI	CCGCTC	2 cut(s)	1250, 4523
BsrDI	GCAATG	3 cut(s)	1152, 2652, 2807
BsrGI	TGTACA	1 cut(s)	2146
BsrI	ACTGG	7 cut(s)	361, 1794, 1979, 2013, 3054, 4019, 4166
BssNI	GRCGYC	1 cut(s)	2669
BssT1I	CCWWGG	6 cut(s)	2105, 2388, 2611, 2620, 3232, 3629
Bst6I	CTCTTC	4 cut(s)	501, 2388, 2907, 3841
BstACI	GRCGYC	1 cut(s)	2669
BstAPI	GCANNNNNTGC	5 cut(s)	2833, 3151, 3979, 4678, 4813
BstAUI	TGTACA	1 cut(s)	2146
BstBI	TTCGAA	1 cut(s)	3833
BstDSI	CCRYGG	3 cut(s)	2105, 2388, 3679
BstENI	CCTNNNNNAGG	3 cut(s)	767, 809, 3628
BstHHI	GCGC	3 cut(s)	643, 676, 1512
BstNSI	RCATGY	6 cut(s)	395, 1213, 1385, 1510, 2983, 4510
BstSFI	CTRYAG	4 cut(s)	432, 1156, 4679, 4805
BstSLI	GKGCMC	2 cut(s)	2162, 4093
BstX2I	RGATCY	6 cut(s)	961, 1646, 2299, 2306, 2479, 2708
BstXI	CCANNNNNNTGG	4 cut(s)	1456, 1759, 3061, 3724
BstYI	RGATCY	6 cut(s)	961, 1646, 2299, 2306, 2479, 2708
BsuI	GTATCC	1 cut(s)	3060
BtgI	CCRYGG	3 cut(s)	2105, 2388, 3679
BtsI	GCAGTG	5 cut(s)	996, 1512, 2198, 2359, 4694
BveI	ACCTGC	4 cut(s)	425, 1326, 3202, 4411
CaiI	CAGNNNCTG	8 cut(s)	296, 440, 2096, 2482, 2912, 4678, 4804, 4813
CciI	TCATGA	1 cut(s)	757
CfoI	GCGC	3 cut(s)	643, 676, 1512
CseI	GACGC	4 cut(s)	1010, 2234, 2658, 3532
CsiI	ACCWGGT	1 cut(s)	76
Csp6I	GTAC	8 cut(s)	6, 92, 1632, 2147, 2617, 3599, 4455, 4720
CspCI	CAANNNNNGTGG	2 cut(s)	375, 410
CviQI	GTAC	8 cut(s)	6, 92, 1632, 2147, 2617, 3599, 4455, 4720
DraIII	CACNNNGTG	2 cut(s)	80, 2762
DrdI	GACNNNNNNGTC	2 cut(s)	412, 3640
DseDI	GACNNNNNNGTC	2 cut(s)	412, 3640
EaeI	YGGCCR	5 cut(s)	1896, 3160, 3229, 3310, 3714
Eam1104I	CTCTTC	4 cut(s)	501, 2388, 2907, 3841
EarI	CTCTTC	4 cut(s)	501, 2388, 2907, 3841
EciI	GGCGGA	1 cut(s)	1659
Ecl136II	GAGCTC	1 cut(s)	2900
Eco130I	CCWWGG	6 cut(s)	2105, 2388, 2611, 2620, 3232, 3629
Eco147I	AGGCCT	1 cut(s)	1468
Eco24I	GRGCYC	3 cut(s)	2162, 2388, 2902
Eco31I	GGTCTC	2 cut(s)	794, 4692
Eco32I	GATATC	2 cut(s)	3336, 4188
Eco47I	GGWCC	7 cut(s)	371, 1965, 2102, 2109, 2753, 4039, 4532
Eco53kI	GAGCTC	1 cut(s)	2900
Eco57I	CTGAAG	2 cut(s)	2316, 3557
Eco88I	CYCGRG	1 cut(s)	608
EcoICRI	GAGCTC	1 cut(s)	2900
EcoNI	CCTNNNNNAGG	3 cut(s)	767, 809, 3628
EcoO109I	RGGNCCY	3 cut(s)	371, 1573, 4532
EcoRI	GAATTC	2 cut(s)	2269, 4513
EcoRV	GATATC	2 cut(s)	3336, 4188
EcoT14I	CCWWGG	6 cut(s)	2105, 2388, 2611, 2620, 3232, 3629
EcoT22I	ATGCAT	1 cut(s)	393
EcoT38I	GRGCYC	3 cut(s)	2162, 2388, 2902
ErhI	CCWWGG	6 cut(s)	2105, 2388, 2611, 2620, 3232, 3629
FalI	AAGNNNNNCTT	4 cut(s)	265, 297, 2788, 2820
FaqI	GGGAC	7 cut(s)	76, 1700, 2064, 2095, 3334, 3592, 4025
FauI	CCCGC	1 cut(s)	3348
FauNDI	CATATG	4 cut(s)	1396, 1708, 3147, 4182
FblI	GTMKAC	1 cut(s)	2817
FriOI	GRGCYC	3 cut(s)	2162, 2388, 2902
FspAI	RTGCGCAY	1 cut(s)	1511
FspBI	CTAG	9 cut(s)	1389, 1473, 1928, 2634, 3705, 4086, 4176, 4467, 4526
FspI	TGCGCA	3 cut(s)	642, 675, 1511
GlaI	GCGC	3 cut(s)	642, 675, 1511
GsaI	CCCAGC	4 cut(s)	1554, 1563, 2085, 3652
GsuI	CTGGAG	8 cut(s)	477, 1338, 1962, 2118, 2916, 3114, 3918, 4100
HapII	CCGG	5 cut(s)	2336, 3170, 3309, 3596, 3691
HgaI	GACGC	4 cut(s)	1010, 2234, 2658, 3532
HhaI	GCGC	3 cut(s)	643, 676, 1512
Hin1I	GRCGYC	1 cut(s)	2669
Hin6I	GCGC	3 cut(s)	641, 674, 1510
HinP1I	GCGC	3 cut(s)	641, 674, 1510
HincII	GTYRAC	2 cut(s)	778, 2818
HindII	GTYRAC	2 cut(s)	778, 2818
HindIII	AAGCTT	1 cut(s)	659
HpaII	CCGG	5 cut(s)	2336, 3170, 3309, 3596, 3691
HphI	GGTGA	9 cut(s)	827, 1613, 2288, 3009, 3311, 3579, 3584, 4424, 4450
Hpy166II	GTNNAC	8 cut(s)	6, 463, 778, 2503, 2756, 2818, 4091, 4348
Hpy8I	GTNNAC	8 cut(s)	6, 463, 778, 2503, 2756, 2818, 4091, 4348
Hpy99I	CGWCG	2 cut(s)	2822, 3457
HpyCH4IV	ACGT	2 cut(s)	649, 2987
HpySE526I	ACGT	2 cut(s)	649, 2987
Hsp92I	GRCGYC	1 cut(s)	2669
HspAI	GCGC	3 cut(s)	641, 674, 1510
Kpn2I	TCCGGA	1 cut(s)	3169
KpnI	GGTACC	2 cut(s)	2620, 3602
LguI	GCTCTTC	1 cut(s)	2907
MabI	ACCWGGT	1 cut(s)	76
MaeI	CTAG	9 cut(s)	1389, 1473, 1928, 2634, 3705, 4086, 4176, 4467, 4526
MaeII	ACGT	2 cut(s)	649, 2987
MbiI	CCGCTC	2 cut(s)	1250, 4523
MfeI	CAATTG	2 cut(s)	1167, 1872
MflI	RGATCY	6 cut(s)	961, 1646, 2299, 2306, 2479, 2708
MhlI	GDGCHC	5 cut(s)	2162, 2388, 2902, 4093, 4657
MlsI	TGGCCA	3 cut(s)	3162, 3231, 3716
MluNI	TGGCCA	3 cut(s)	3162, 3231, 3716
MlyI	GAGTC	5 cut(s)	445, 1454, 1685, 3628, 4771
MmeI	TCCRAC	4 cut(s)	354, 1520, 4254, 4630
Mox20I	TGGCCA	3 cut(s)	3162, 3231, 3716
Mph1103I	ATGCAT	1 cut(s)	393
MroI	TCCGGA	1 cut(s)	3169
MroXI	GAANNNNTTC	1 cut(s)	2803
MscI	TGGCCA	3 cut(s)	3162, 3231, 3716
MslI	CAYNNNNRTG	3 cut(s)	1454, 2634, 4864
Msp20I	TGGCCA	3 cut(s)	3162, 3231, 3716
MspA1I	CMGCKG	5 cut(s)	671, 797, 3463, 3796, 4684
MspI	CCGG	5 cut(s)	2336, 3170, 3309, 3596, 3691
MunI	CAATTG	2 cut(s)	1167, 1872
Mva1269I	GAATGC	2 cut(s)	2340, 2838
NciI	CCSGG	3 cut(s)	2337, 3309, 3596
NcoI	CCATGG	2 cut(s)	2105, 2388
NdeI	CATATG	4 cut(s)	1396, 1708, 3147, 4182
NmuCI	GTSAC	6 cut(s)	275, 483, 2246, 2670, 3214, 4254
NsbI	TGCGCA	3 cut(s)	642, 675, 1511
NsiI	ATGCAT	1 cut(s)	393
NspI	RCATGY	6 cut(s)	395, 1213, 1385, 1510, 2983, 4510
NspV	TTCGAA	1 cut(s)	3833
PaeI	GCATGC	3 cut(s)	1213, 1510, 2983
PaeR7I	CTCGAG	1 cut(s)	608
PagI	TCATGA	1 cut(s)	757
PaqCI	CACCTGC	1 cut(s)	4411
PasI	CCCWGGG	1 cut(s)	367
PceI	AGGCCT	1 cut(s)	1468
PciSI	GCTCTTC	1 cut(s)	2907
PcsI	WCGNNNNNNNCGW	1 cut(s)	2923
PctI	GAATGC	2 cut(s)	2340, 2838
PdmI	GAANNNNTTC	1 cut(s)	2803
PflMI	CCANNNNNTGG	3 cut(s)	80, 1961, 2096
PfoI	TCCNGGA	5 cut(s)	454, 1777, 2302, 2905, 3934
PleI	GAGTC	5 cut(s)	445, 1453, 1684, 3628, 4771
PpsI	GAGTC	5 cut(s)	445, 1453, 1684, 3628, 4771
PpuMI	RGGWCCY	2 cut(s)	371, 4532
PshBI	ATTAAT	1 cut(s)	2258
Psp124BI	GAGCTC	1 cut(s)	2902
Psp5II	RGGWCCY	2 cut(s)	371, 4532
PspFI	CCCAGC	4 cut(s)	1550, 1559, 2081, 3648
PspOMI	GGGCCC	1 cut(s)	2158
PspPPI	RGGWCCY	2 cut(s)	371, 4532
PspXI	VCTCGAGB	1 cut(s)	608
PstI	CTGCAG	3 cut(s)	436, 4683, 4809
PstNI	CAGNNNCTG	8 cut(s)	296, 440, 2096, 2482, 2912, 4678, 4804, 4813
PsuI	RGATCY	6 cut(s)	961, 1646, 2299, 2306, 2479, 2708
PvuII	CAGCTG	1 cut(s)	797
RsaI	GTAC	8 cut(s)	7, 93, 1633, 2148, 2618, 3600, 4456, 4721
RsaNI	GTAC	8 cut(s)	6, 92, 1632, 2147, 2617, 3599, 4455, 4720
RseI	CAYNNNNRTG	3 cut(s)	1454, 2634, 4864
SacI	GAGCTC	1 cut(s)	2902
SalI	GTCGAC	1 cut(s)	2816
SapI	GCTCTTC	1 cut(s)	2907
ScaI	AGTACT	1 cut(s)	1633
SchI	GAGTC	5 cut(s)	445, 1454, 1685, 3628, 4771
SduI	GDGCHC	5 cut(s)	2162, 2388, 2902, 4093, 4657
SexAI	ACCWGGT	1 cut(s)	76
SfcI	CTRYAG	4 cut(s)	432, 1156, 4679, 4805
Sfr274I	CTCGAG	1 cut(s)	608
SfuI	TTCGAA	1 cut(s)	3833
SinI	GGWCC	7 cut(s)	371, 1965, 2102, 2109, 2753, 4039, 4532
SlaI	CTCGAG	1 cut(s)	608
SmiMI	CAYNNNNRTG	3 cut(s)	1454, 2634, 4864
SmlI	CTYRAG	6 cut(s)	375, 608, 2405, 3950, 4149, 4386
SmoI	CTYRAG	6 cut(s)	375, 608, 2405, 3950, 4149, 4386
SphI	GCATGC	3 cut(s)	1213, 1510, 2983
SseBI	AGGCCT	1 cut(s)	1468
SspI	AATATT	2 cut(s)	37, 2256
SspMI	CTAG	9 cut(s)	1389, 1473, 1928, 2634, 3705, 4086, 4176, 4467, 4526
SstI	GAGCTC	1 cut(s)	2902
StuI	AGGCCT	1 cut(s)	1468
StyI	CCWWGG	6 cut(s)	2105, 2388, 2611, 2620, 3232, 3629
TaiI	ACGT	2 cut(s)	652, 2990
TaqI	TCGA	7 cut(s)	42, 514, 609, 1454, 2041, 2817, 3833
TatI	WGTACW	4 cut(s)	5, 1631, 2146, 4454
TauI	GCSGC	5 cut(s)	671, 3157, 3412, 3799, 4252
TseFI	GTSAC	6 cut(s)	275, 483, 2246, 2670, 3214, 4254
Tsp45I	GTSAC	6 cut(s)	275, 483, 2246, 2670, 3214, 4254
TspGWI	ACGGA	1 cut(s)	2068
Van91I	CCANNNNNTGG	3 cut(s)	80, 1961, 2096
VneI	GTGCAC	1 cut(s)	4089
VpaK11BI	GGWCC	7 cut(s)	371, 1965, 2102, 2109, 2753, 4039, 4532
VspI	ATTAAT	1 cut(s)	2258
XagI	CCTNNNNNAGG	3 cut(s)	767, 809, 3628
XapI	RAATTY	6 cut(s)	1062, 2018, 2269, 3031, 3583, 4513
XbaI	TCTAGA	1 cut(s)	1927
XceI	RCATGY	6 cut(s)	395, 1213, 1385, 1510, 2983, 4510
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1837
XhoI	CTCGAG	1 cut(s)	608
XmiI	GTMKAC	1 cut(s)	2817
XmnI	GAANNNNTTC	1 cut(s)	2803
XspI	CTAG	9 cut(s)	1389, 1473, 1928, 2634, 3705, 4086, 4176, 4467, 4526
ZrmI	AGTACT	1 cut(s)	1633
Zsp2I	ATGCAT	1 cut(s)	393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.