pycom10g22530

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0006276
Physical Location & Seq
Reverse (-)
24874325 .. 24877175
2851 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1722 bp
ATGATTGCCACTAAAACCATGTTGTCGAGCAACAAGCTGAAGATTAAATTTGCCTGCAAAAGAATTGAAGCTGATCCCGGGAAAAAATTAGAAGCTGATTCTAATTATTCTAGGAGTCACTCACGTGACGATGGGCACCTAGCCTCACTCAGAGAGGTCAGCTCAATGTCAATATCTTCACTTCCGGGTTCTAAGAAGCGTGAACGCTCGGGGGATCTTGAGGGTCAGAAAGAGAAGAAGATGAAGATTGATCGTAGTGTGAAGGTGCAATGCTCAACGATTCTCAAAACACTGATGAATAACAAGGAAAGCTGGCCTTTCAATGAACCAGTTGATCCTGTGAAGCTGAGAATCCCTGATTACTTCCACATCATCTCTCATCCCATGGATTTGGGCACGGTAAAATCAAAGCTGCAGAAAGATTTGTACTGCAATGCTGAAGCCTTTGCTGGGGATGTCAGGCTGACTTTTTCTAATGCCATGCTCTATAATCCTCCTGGAAATCCGTTTCATCATATGGCAGAAAACCTGAATAGGATTTTTGAGATGAGATGGGGTCTTTTAGATGAGAAGTTGAGTCATGGAAGCTCAAAGGTTGAATCTGGGAAACCTTCGAGTGGGCAAATTAAGAAAGTAACTTGTGTGAGACAGAATCCCTGCAACACTCCTCCCTTGCAAAATAGGTTGGTGGTCAAGAGGTCTATTCCATGCGAAGAGAAGGTAAGAGTCCCTGTTGGTGCAACTGATGCTGAGGCAGAGGTTTCTAAAACAGCTCAGAATTCTAAGCCCAAATTGTCATCAAAGTACTTAAATACAAGCACCGATGGTGGCTATGAACAAGCTTCAGGCATTAATGTAAAGCAGCCATCAAGCCTGGTTTGCTTAAAATGTGGTTCATGTGGAAACATTGCATGTCAATGCAGGCATTCTAGTGACTCAACCCTTACGTCCTTAAGTGACAAATCTTCTGAAGGGTCAATGGGCAGGGAGCATGGTTTGTCTAATTCTAATGTATCCAGACTGGATTGTCAAGCAAAAAGCTTGTCAACATCCCAGACGAGCAAATCAGATCCAGAATCTGATGGGGACGTAAGTGCTTTGGATGGGGAAAACATATGTTCTAGTCCTCGGCTTACAACTCCAGTATCGGATTCTGCTTCTGGAGAAGGATGGAGCACTTCTCATTTTGACGTTCAAATGTCACCGAAAAGGGCTCTCCGTGCTGCAATGCTAAAGAGCCGCTTTGCAGACACTATTTGGAAAGCTCAACAGCAGAAACTCCTAGATCATGATGACAGAAGTGATCCACTTAAGATGCAGCAGGAAAGGGCAAGATTGGAGAGGAAGCAGCGTGAAGAGAAAGCAAGGATCGAAGCTGAAATAAGAGCTGCTGAAGCTGCCACACGAAAGAGGGCCGAGAATGAGTTGAAGCAGCAACGGGAAAGAAAAAGAGAAGAAGCTCGAATTGCACTTGAGAAGATGAAGCGAACAGTTGAGGTTGACACAAGCTTGAAGATCCTAGAGGAACTTGGAAGATTTACAGGGTTATCCGTATTTGCTCCTATTCTCAACTTTAATCGCGGGTCTGGGGGTTTCTGTGGATCACATCTCCAATCACCTTTGGAGCAGTTAGGTTTATTTGTAAAGCCTGAATATTCAGGAGACGACGACGATGATGAATCAATGCTGTACGAGGATGGGGAAGAAGGAGAGATTGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bromodomain

Protein Analysis

574

Amino Acids

63.63

Weight (kDa)

8.59

Isoelectric Point (pI)

46.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bromodomain PF00439 91 - 175 9.7e-20 Bromodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1026
AccB1I GGYRCC 1 cut(s) 135
AccII CGCG 1 cut(s) 1581
AciI CCGC 2 cut(s) 1240, 1581
AclWI GGATC 8 cut(s) 68, 222, 329, 1064, 1298, 1376, 1510, 1609
AcsI RAATTY 2 cut(s) 47, 778
AcuI CTGAAG 5 cut(s) 59, 459, 828, 990, 1413
AcvI CACGTG 1 cut(s) 125
AfaI GTAC 3 cut(s) 428, 806, 1691
AfiI CCNNNNNNNGG 2 cut(s) 450, 617
AflII CTTAAG 2 cut(s) 952, 1310
AgsI TTSAA 6 cut(s) 68, 322, 599, 1196, 1429, 1513
AjnI CCWGG 2 cut(s) 496, 873
AleI CACNNNNGTG 1 cut(s) 123
Alw21I GWGCWC 1 cut(s) 1178
Alw26I GTCTC 2 cut(s) 640, 1656
AlwI GGATC 8 cut(s) 68, 222, 329, 1064, 1298, 1376, 1510, 1609
AlwNI CAGNNNCTG 1 cut(s) 1079
Ama87I CYCGRG 2 cut(s) 77, 208
AoxI GGCC 2 cut(s) 314, 1413
ApeKI GCWGC 8 cut(s) 412, 862, 1223, 1318, 1348, 1388, 1397, 1432
ApoI RAATTY 2 cut(s) 47, 778
ArsI GACNNNNNNTTYG 2 cut(s) 1028, 1060
AseI ATTAAT 1 cut(s) 852
AspS9I GGNCC 1 cut(s) 1413
AsuC2I CCSGG 3 cut(s) 78, 79, 186
AsuHPI GGTGA 2 cut(s) 1194, 1608
AvaI CYCGRG 2 cut(s) 77, 208
BaeGI GKGCMC 2 cut(s) 138, 398
BaeI ACNNNNGTAYC 2 cut(s) 1128, 1161
BanI GGYRCC 1 cut(s) 135
BanII GRGCYC 1 cut(s) 1216
BbrPI CACGTG 1 cut(s) 125
Bbv12I GWGCWC 1 cut(s) 1178
BbvCI CCTCAGC 1 cut(s) 750
BbvI GCAGC 8 cut(s) 399, 874, 1210, 1330, 1360, 1375, 1384, 1444
BccI CCATC 8 cut(s) 125, 546, 818, 874, 1076, 1097, 1164, 1691
BciT130I CCWGG 2 cut(s) 498, 875
BciVI GTATCC 1 cut(s) 1024
BcnI CCSGG 3 cut(s) 78, 79, 186
BcoDI GTCTC 2 cut(s) 640, 1656
BfaI CTAG 6 cut(s) 111, 140, 930, 1122, 1283, 1520
BfmI CTRYAG 1 cut(s) 413
BfrI CTTAAG 2 cut(s) 952, 1310
BfuI GTATCC 1 cut(s) 1024
BisI GCNGC 9 cut(s) 413, 863, 1224, 1240, 1319, 1349, 1389, 1398, 1433
BlsI GCNGC 9 cut(s) 414, 864, 1225, 1241, 1320, 1350, 1390, 1399, 1434
BmcAI AGTACT 1 cut(s) 806
Bme1390I CCNGG 5 cut(s) 78, 79, 186, 498, 875
BmeT110I CYCGRG 2 cut(s) 77, 208
BmgT120I GGNCC 1 cut(s) 1413
BmiI GGNNCC 1 cut(s) 137
BmrFI CCNGG 5 cut(s) 78, 79, 186, 498, 875
BmsI GCATC 2 cut(s) 736, 1305
BplI GAGNNNNNCTC 4 cut(s) 146, 178, 1165, 1197
BpmI CTGGAG 2 cut(s) 1125, 1182
Bpu10I CCTNAGC 1 cut(s) 750
BpuEI CTTGAG 2 cut(s) 239, 1493
BpuMI CCSGG 3 cut(s) 78, 79, 186
BsaAI YACGTR 1 cut(s) 125
BsaJI CCNNGG 3 cut(s) 77, 384, 1127
BsaXI ACNNNNNCTCC 1 cut(s) 1701
Bsc4I CCNNNNNNNGG 2 cut(s) 450, 617
Bse1I ACTGG 3 cut(s) 329, 1026, 1142
Bse3DI GCAATG 4 cut(s) 275, 439, 906, 1233
BseBI CCWGG 2 cut(s) 498, 875
BseDI CCNNGG 3 cut(s) 77, 384, 1127
BseGI GGATG 6 cut(s) 379, 460, 1049, 1108, 1175, 1702
BseLI CCNNNNNNNGG 2 cut(s) 450, 617
BseMI GCAATG 4 cut(s) 275, 439, 906, 1233
BseMII CTCAG 4 cut(s) 163, 338, 741, 788
BseNI ACTGG 3 cut(s) 329, 1026, 1142
BseRI GAGGAG 1 cut(s) 657
BseSI GKGCMC 2 cut(s) 138, 398
BseXI GCAGC 8 cut(s) 399, 874, 1210, 1330, 1360, 1375, 1384, 1444
BseYI CCCAGC 1 cut(s) 449
Bsh1236I CGCG 1 cut(s) 1581
BshFI GGCC 2 cut(s) 316, 1415
BshNI GGYRCC 1 cut(s) 135
BsiHKAI GWGCWC 1 cut(s) 1178
BsiHKCI CYCGRG 2 cut(s) 77, 208
BsiSI CCGG 2 cut(s) 78, 185
BslFI GGGAC 2 cut(s) 713, 1100
BslI CCNNNNNNNGG 2 cut(s) 450, 617
BsmAI GTCTC 2 cut(s) 640, 1656
BsmBI CGTCTC 1 cut(s) 1656
BsmFI GGGAC 2 cut(s) 713, 1100
BsmI GAATGC 1 cut(s) 925
BsnI GGCC 2 cut(s) 316, 1415
BsoBI CYCGRG 2 cut(s) 77, 208
Bsp1286I GDGCHC 4 cut(s) 138, 398, 1178, 1216
Bsp19I CCATGG 1 cut(s) 384
BspACI CCGC 2 cut(s) 1240, 1581
BspANI GGCC 2 cut(s) 316, 1415
BspCNI CTCAG 4 cut(s) 162, 339, 742, 787
BspFNI CGCG 1 cut(s) 1581
BspHI TCATGA 1 cut(s) 1288
BspLI GGNNCC 1 cut(s) 137
BspMAI CTGCAG 1 cut(s) 417
BspPI GGATC 8 cut(s) 68, 222, 329, 1064, 1298, 1376, 1510, 1609
BspT107I GGYRCC 1 cut(s) 135
BspTI CTTAAG 2 cut(s) 952, 1310
BsrDI GCAATG 4 cut(s) 275, 439, 906, 1233
BsrI ACTGG 3 cut(s) 329, 1026, 1142
BssECI CCNNGG 3 cut(s) 77, 384, 1127
BssT1I CCWWGG 1 cut(s) 384
Bst2UI CCWGG 2 cut(s) 498, 875
Bst4CI ACNGT 2 cut(s) 400, 1492
Bst6I CTCTTC 2 cut(s) 708, 1350
BstAFI CTTAAG 2 cut(s) 952, 1310
BstAPI GCANNNNNTGC 1 cut(s) 746
BstBAI YACGTR 1 cut(s) 125
BstC8I GCNNGC 3 cut(s) 55, 314, 923
BstDEI CTNAG 6 cut(s) 149, 192, 347, 750, 774, 783
BstDSI CCRYGG 1 cut(s) 384
BstF5I GGATG 6 cut(s) 379, 460, 1049, 1108, 1175, 1702
BstFNI CGCG 1 cut(s) 1581
BstMAI GTCTC 2 cut(s) 640, 1656
BstMWI GCNNNNNNNGC 6 cut(s) 746, 879, 1220, 1394, 1397, 1466
BstNI CCWGG 2 cut(s) 498, 875
BstNSI RCATGY 1 cut(s) 915
BstSCI CCNGG 5 cut(s) 76, 77, 184, 496, 873
BstSFI CTRYAG 1 cut(s) 413
BstSLI GKGCMC 2 cut(s) 138, 398
BstUI CGCG 1 cut(s) 1581
BstV1I GCAGC 8 cut(s) 399, 874, 1210, 1330, 1360, 1375, 1384, 1444
BstX2I RGATCY 3 cut(s) 214, 1069, 1515
BstXI CCANNNNNNTGG 1 cut(s) 391
BstYI RGATCY 3 cut(s) 214, 1069, 1515
BsuI GTATCC 1 cut(s) 1024
BsuRI GGCC 2 cut(s) 316, 1415
BtgI CCRYGG 1 cut(s) 384
BtsCI GGATG 6 cut(s) 379, 460, 1049, 1108, 1175, 1702
BtsIMutI CAGTG 1 cut(s) 290
Cac8I GCNNGC 3 cut(s) 55, 314, 923
CaiI CAGNNNCTG 1 cut(s) 1079
CciI TCATGA 1 cut(s) 1288
Cfr13I GGNCC 1 cut(s) 1413
Cfr9I CCCGGG 1 cut(s) 77
Csp6I GTAC 3 cut(s) 427, 805, 1690
CviAII CATG 9 cut(s) 19, 385, 481, 581, 708, 897, 912, 992, 1289
CviQI GTAC 3 cut(s) 427, 805, 1690
DdeI CTNAG 6 cut(s) 149, 192, 347, 750, 774, 783
DrdI GACNNNNNNGTC 1 cut(s) 1026
DseDI GACNNNNNNGTC 1 cut(s) 1026
Eam1104I CTCTTC 2 cut(s) 708, 1350
EarI CTCTTC 2 cut(s) 708, 1350
Eco130I CCWWGG 1 cut(s) 384
Eco24I GRGCYC 1 cut(s) 1216
Eco57I CTGAAG 5 cut(s) 59, 459, 828, 990, 1413
Eco72I CACGTG 1 cut(s) 125
Eco88I CYCGRG 2 cut(s) 77, 208
EcoRI GAATTC 1 cut(s) 778
EcoRII CCWGG 2 cut(s) 496, 873
EcoT14I CCWWGG 1 cut(s) 384
EcoT38I GRGCYC 1 cut(s) 1216
ErhI CCWWGG 1 cut(s) 384
Esp3I CGTCTC 1 cut(s) 1656
FaeI CATG 9 cut(s) 22, 388, 484, 584, 711, 900, 915, 995, 1292
FalI AAGNNNNNCTT 4 cut(s) 301, 333, 1226, 1258
FaqI GGGAC 2 cut(s) 713, 1100
FatI CATG 9 cut(s) 18, 384, 480, 580, 707, 896, 911, 991, 1288
FauI CCCGC 1 cut(s) 1574
FauNDI CATATG 2 cut(s) 516, 1115
Fnu4HI GCNGC 9 cut(s) 413, 863, 1224, 1240, 1319, 1349, 1389, 1398, 1433
FokI GGATG 6 cut(s) 366, 467, 1036, 1115, 1182, 1709
FriOI GRGCYC 1 cut(s) 1216
Fsp4HI GCNGC 9 cut(s) 413, 863, 1224, 1240, 1319, 1349, 1389, 1398, 1433
FspBI CTAG 6 cut(s) 111, 140, 930, 1122, 1283, 1520
GluI GCNGC 9 cut(s) 413, 863, 1224, 1240, 1319, 1349, 1389, 1398, 1433
GsaI CCCAGC 1 cut(s) 453
GsuI CTGGAG 2 cut(s) 1125, 1182
HaeIII GGCC 2 cut(s) 316, 1415
HapII CCGG 2 cut(s) 78, 185
Hin1II CATG 9 cut(s) 22, 388, 484, 584, 711, 900, 915, 995, 1292
HincII GTYRAC 2 cut(s) 1047, 1501
HindII GTYRAC 2 cut(s) 1047, 1501
HindIII AAGCTT 3 cut(s) 840, 1039, 1507
HpaII CCGG 2 cut(s) 78, 185
HphI GGTGA 2 cut(s) 1194, 1608
Hpy166II GTNNAC 3 cut(s) 203, 1047, 1501
Hpy188I TCNGA 8 cut(s) 152, 228, 777, 970, 1069, 1081, 1150, 1721
Hpy188III TCNNGA 7 cut(s) 218, 694, 1017, 1073, 1161, 1289, 1659
Hpy8I GTNNAC 3 cut(s) 203, 1047, 1501
Hpy99I CGWCG 2 cut(s) 1670, 1673
HpyAV CCTTC 6 cut(s) 256, 621, 712, 965, 1160, 1700
HpyCH4III ACNGT 2 cut(s) 400, 1492
HpyCH4IV ACGT 4 cut(s) 124, 947, 1089, 1191
HpyF10VI GCNNNNNNNGC 6 cut(s) 746, 879, 1220, 1394, 1397, 1466
HpyF3I CTNAG 6 cut(s) 149, 192, 347, 750, 774, 783
HpySE526I ACGT 4 cut(s) 124, 947, 1089, 1191
Hsp92II CATG 9 cut(s) 22, 388, 484, 584, 711, 900, 915, 995, 1292
LmnI GCTCC 4 cut(s) 988, 1173, 1564, 1624
Lsp1109I GCAGC 8 cut(s) 399, 874, 1210, 1330, 1360, 1375, 1384, 1444
LweI GCATC 2 cut(s) 736, 1305
MaeI CTAG 6 cut(s) 111, 140, 930, 1122, 1283, 1520
MaeII ACGT 4 cut(s) 124, 947, 1089, 1191
MaeIII GTNAC 6 cut(s) 116, 125, 634, 932, 956, 1200
MflI RGATCY 3 cut(s) 214, 1069, 1515
MhlI GDGCHC 4 cut(s) 138, 398, 1178, 1216
MluCI AATT 9 cut(s) 47, 63, 86, 103, 624, 778, 791, 1003, 1464
MlyI GAGTC 4 cut(s) 124, 586, 735, 929
MseI TTAA 8 cut(s) 45, 627, 809, 852, 884, 953, 1311, 1575
MslI CAYNNNNRTG 3 cut(s) 123, 916, 930
MspCI CTTAAG 2 cut(s) 952, 1310
MspI CCGG 2 cut(s) 78, 185
MspR9I CCNGG 5 cut(s) 78, 79, 186, 498, 875
Mva1269I GAATGC 1 cut(s) 925
MvaI CCWGG 2 cut(s) 498, 875
MvnI CGCG 1 cut(s) 1581
MwoI GCNNNNNNNGC 6 cut(s) 746, 879, 1220, 1394, 1397, 1466
NciI CCSGG 3 cut(s) 78, 79, 186
NcoI CCATGG 1 cut(s) 384
NdeI CATATG 2 cut(s) 516, 1115
NlaIII CATG 9 cut(s) 22, 388, 484, 584, 711, 900, 915, 995, 1292
NlaIV GGNNCC 1 cut(s) 137
NmeAIII GCCGAG 2 cut(s) 1108, 1441
NmuCI GTSAC 5 cut(s) 116, 125, 932, 956, 1200
NspI RCATGY 1 cut(s) 915
OliI CACNNNNGTG 1 cut(s) 123
PagI TCATGA 1 cut(s) 1288
PctI GAATGC 1 cut(s) 925
PfeI GAWTC 8 cut(s) 98, 280, 351, 599, 652, 1076, 1151, 1679
PfoI TCCNGGA 1 cut(s) 496
PkrI GCNGC 9 cut(s) 414, 864, 1225, 1241, 1320, 1350, 1390, 1399, 1434
PleI GAGTC 4 cut(s) 123, 585, 734, 929
PmaCI CACGTG 1 cut(s) 125
PmlI CACGTG 1 cut(s) 125
PpsI GAGTC 4 cut(s) 123, 585, 734, 929
Ppu21I YACGTR 1 cut(s) 125
PshBI ATTAAT 1 cut(s) 852
Psp6I CCWGG 2 cut(s) 496, 873
PspCI CACGTG 1 cut(s) 125
PspFI CCCAGC 1 cut(s) 449
PspGI CCWGG 2 cut(s) 496, 873
PspN4I GGNNCC 1 cut(s) 137
PspPI GGNCC 1 cut(s) 1413
PstI CTGCAG 1 cut(s) 417
PstNI CAGNNNCTG 1 cut(s) 1079
PsuI RGATCY 3 cut(s) 214, 1069, 1515
RsaI GTAC 3 cut(s) 428, 806, 1691
RsaNI GTAC 3 cut(s) 427, 805, 1690
RseI CAYNNNNRTG 3 cut(s) 123, 916, 930
SaqAI TTAA 8 cut(s) 45, 627, 809, 852, 884, 953, 1311, 1575
SatI GCNGC 9 cut(s) 413, 863, 1224, 1240, 1319, 1349, 1389, 1398, 1433
Sau96I GGNCC 1 cut(s) 1413
ScaI AGTACT 1 cut(s) 806
SchI GAGTC 4 cut(s) 124, 586, 735, 929
ScrFI CCNGG 5 cut(s) 78, 79, 186, 498, 875
SduI GDGCHC 4 cut(s) 138, 398, 1178, 1216
SfaNI GCATC 2 cut(s) 736, 1305
SfcI CTRYAG 1 cut(s) 413
SmaI CCCGGG 1 cut(s) 79
SmiMI CAYNNNNRTG 3 cut(s) 123, 916, 930
SmlI CTYRAG 4 cut(s) 218, 952, 1310, 1472
SmoI CTYRAG 4 cut(s) 218, 952, 1310, 1472
Sse9I AATT 9 cut(s) 47, 63, 86, 103, 624, 778, 791, 1003, 1464
SsiI CCGC 2 cut(s) 1240, 1581
SspI AATATT 1 cut(s) 1655
SspMI CTAG 6 cut(s) 111, 140, 930, 1122, 1283, 1520
StyD4I CCNGG 5 cut(s) 76, 77, 184, 496, 873
StyI CCWWGG 1 cut(s) 384
TaaI ACNGT 2 cut(s) 400, 1492
TaiI ACGT 4 cut(s) 127, 950, 1092, 1194
TaqI TCGA 4 cut(s) 26, 614, 1371, 1462
TasI AATT 9 cut(s) 47, 63, 86, 103, 624, 778, 791, 1003, 1464
TatI WGTACW 2 cut(s) 426, 804
TauI GCSGC 1 cut(s) 1242
TfiI GAWTC 8 cut(s) 98, 280, 351, 599, 652, 1076, 1151, 1679
Tru1I TTAA 8 cut(s) 45, 627, 809, 852, 884, 953, 1311, 1575
Tru9I TTAA 8 cut(s) 45, 627, 809, 852, 884, 953, 1311, 1575
TscAI CASTG 1 cut(s) 297
TseFI GTSAC 5 cut(s) 116, 125, 932, 956, 1200
TseI GCWGC 8 cut(s) 412, 862, 1223, 1318, 1348, 1388, 1397, 1432
Tsp45I GTSAC 5 cut(s) 116, 125, 932, 956, 1200
TspDTI ATGAA 8 cut(s) 257, 311, 339, 500, 849, 885, 1496, 1692
TspGWI ACGGA 3 cut(s) 495, 1208, 1540
TspMI CCCGGG 1 cut(s) 77
TspRI CASTG 1 cut(s) 297
Vha464I CTTAAG 2 cut(s) 952, 1310
VspI ATTAAT 1 cut(s) 852
XapI RAATTY 2 cut(s) 47, 778
XceI RCATGY 1 cut(s) 915
XmaI CCCGGG 1 cut(s) 77
XspI CTAG 6 cut(s) 111, 140, 930, 1122, 1283, 1520
ZrmI AGTACT 1 cut(s) 806
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.