Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0008848

Physical Location & Seq

Genomic Coordinates Reverse (-)

25808402 .. 25809383

Gene Structure 982 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGCGTAAATACATACCGAAGATACTGCCGAGTCTTCTGACAATAGACGGAAATGCTAATGAATCCAGTATAAAAGAGCTGTTCCATAGAATAGACAAGAATCATAACACATACATATCAGCAGATGAACTTAGAGCATTGATCCTAGGAATACAAATAGAAGAAATAGGTCTGGATGATGATGATTATATGGAGTTTGTGAATGGACTCTCAAAATGGATTAATCTATATAAGACCCCTGCCAACGGTAAAGATAACGAACATAGATCGCTTTTCAGAAGAAATCATTCCAAGAAAAACAAGATTTTCATTCGGGTCATTAACCTGCACTTGCAGAATGAGACATCTATGGAAGATCAGCAGATACGGCTGATCTCTAAGAAAAAGAAGACTAGGGGAACTGCAATAACGGTTTTTCTTTCAATGCCCCTCATGGTAAGTCTCCAAGAGTTTTCCACTGCTGCAAGCATCCCTTCTTTCACGACCTCGTATGTTGTGATACCCTTGGCTACAAAATACAGAGTGGCGCCAATGTCTGTATCGTCTGCCAAAGACAAGACGGAGAATGCCATCTCCTTAACACTTTCTGAGGTCTGTTTGTCTCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF-hand_7 Na_Ca_ex

Protein Analysis

203

Amino Acids

22.93

Weight (kDa)

9.23

Isoelectric Point (pI)

41.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008848)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g08180 FvH4_3g08181 FvH4_3g08181
malus_domestica	MD05G1305500.v1.1 MD10G1284700.v1.1 MD10G1284800.v1.1 MD10G1284900.v1.1
prunus_persica	Prupe.4G056800_v2.0.a1
pyrus_communis	pycom05g28280 pycom10g23770 pycom10g23790 pycom10g23800 pycom10g23810
rosa_chinensis	RchiOBHm_Chr5g0010001
rosa_laevigata	RLG00000031718
rosa_roxburghii	Rroxscaffold_1G00066160
rosa_rugosa	Rorug04G0448600 Rorug04G0448700
rosa_samantha	Rh5AG079300 Rh5BG074100 Rh5CG086700 Rh5DG074800
rosa_wichuraiana	Rw5G007340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	333
AccB1I	GGYRCC	1 cut(s)	526
AclWI	GGATC	1 cut(s)	136
AcyI	GRCGYC	1 cut(s)	527
AfiI	CCNNNNNNNGG	1 cut(s)	245
AgsI	TTSAA	1 cut(s)	423
AluBI	AGCT	1 cut(s)	79
AluI	AGCT	1 cut(s)	79
Alw26I	GTCTC	2 cut(s)	335, 446
AlwI	GGATC	1 cut(s)	136
ApeKI	GCWGC	1 cut(s)	461
AseI	ATTAAT	1 cut(s)	222
Asp700I	GAANNNNTTC	1 cut(s)	286
AspA2I	CCTAGG	1 cut(s)	145
AspLEI	GCGC	1 cut(s)	529
AvrII	CCTAGG	1 cut(s)	145
BanI	GGYRCC	1 cut(s)	526
BbsI	GAAGAC	2 cut(s)	26, 395
BbvI	GCAGC	1 cut(s)	448
BccI	CCATC	1 cut(s)	578
BceAI	ACGGC	1 cut(s)	383
BcgI	CGANNNNNNTGC	2 cut(s)	7, 41
BcoDI	GTCTC	2 cut(s)	335, 446
BfaI	CTAG	2 cut(s)	146, 393
BfoI	RGCGCY	1 cut(s)	530
BfuAI	ACCTGC	1 cut(s)	333
BisI	GCNGC	1 cut(s)	462
BlnI	CCTAGG	1 cut(s)	145
BlsI	GCNGC	1 cut(s)	463
BmiI	GGNNCC	1 cut(s)	528
BmsI	GCATC	1 cut(s)	477
BpiI	GAAGAC	2 cut(s)	26, 395
BsaHI	GRCGYC	1 cut(s)	527
BsaJI	CCNNGG	2 cut(s)	145, 504
Bsc4I	CCNNNNNNNGG	1 cut(s)	245
Bse1I	ACTGG	1 cut(s)	66
BseDI	CCNNGG	2 cut(s)	145, 504
BseGI	GGATG	2 cut(s)	181, 468
BseLI	CCNNNNNNNGG	1 cut(s)	245
BseMII	CTCAG	1 cut(s)	579
BseNI	ACTGG	1 cut(s)	66
BseXI	GCAGC	1 cut(s)	448
BsgI	GTGCAG	1 cut(s)	311
BshNI	GGYRCC	1 cut(s)	526
BslI	CCNNNNNNNGG	1 cut(s)	245
BsmAI	GTCTC	2 cut(s)	335, 446
BsmI	GAATGC	1 cut(s)	571
Bsp143I	GATC	4 cut(s)	141, 266, 355, 372
BspCNI	CTCAG	1 cut(s)	580
BspLI	GGNNCC	1 cut(s)	528
BspMI	ACCTGC	1 cut(s)	333
BspPI	GGATC	1 cut(s)	136
BspT107I	GGYRCC	1 cut(s)	526
BsrI	ACTGG	1 cut(s)	66
BssECI	CCNNGG	2 cut(s)	145, 504
BssMI	GATC	4 cut(s)	141, 266, 355, 372
BssNI	GRCGYC	1 cut(s)	527
BssT1I	CCWWGG	2 cut(s)	145, 504
Bst4CI	ACNGT	2 cut(s)	248, 412
BstACI	GRCGYC	1 cut(s)	527
BstC8I	GCNNGC	1 cut(s)	466
BstDEI	CTNAG	3 cut(s)	131, 378, 588
BstF5I	GGATG	2 cut(s)	181, 468
BstH2I	RGCGCY	1 cut(s)	530
BstHHI	GCGC	1 cut(s)	529
BstKTI	GATC	4 cut(s)	144, 269, 358, 375
BstMAI	GTCTC	2 cut(s)	335, 446
BstMBI	GATC	4 cut(s)	141, 266, 355, 372
BstMWI	GCNNNNNNNGC	1 cut(s)	367
BstV1I	GCAGC	1 cut(s)	448
BstV2I	GAAGAC	2 cut(s)	26, 395
BtsCI	GGATG	2 cut(s)	181, 468
BtsI	GCAGTG	1 cut(s)	456
BtsIMutI	CAGTG	1 cut(s)	456
BveI	ACCTGC	1 cut(s)	333
Cac8I	GCNNGC	1 cut(s)	466
CfoI	GCGC	1 cut(s)	529
CviAII	CATG	1 cut(s)	433
CviJI	RGCY	3 cut(s)	79, 370, 509
CviKI_1	RGCY	3 cut(s)	79, 370, 509
DdeI	CTNAG	3 cut(s)	131, 378, 588
DinI	GGCGCC	1 cut(s)	528
DpnI	GATC	4 cut(s)	143, 268, 357, 374
DpnII	GATC	4 cut(s)	141, 266, 355, 372
Eco130I	CCWWGG	2 cut(s)	145, 504
EcoT14I	CCWWGG	2 cut(s)	145, 504
EgeI	GGCGCC	1 cut(s)	528
EheI	GGCGCC	1 cut(s)	528
ErhI	CCWWGG	2 cut(s)	145, 504
FaeI	CATG	1 cut(s)	436
FalI	AAGNNNNNCTT	2 cut(s)	457, 489
FatI	CATG	1 cut(s)	432
Fnu4HI	GCNGC	1 cut(s)	462
FokI	GGATG	2 cut(s)	188, 455
Fsp4HI	GCNGC	1 cut(s)	462
FspBI	CTAG	2 cut(s)	146, 393
GlaI	GCGC	1 cut(s)	528
GluI	GCNGC	1 cut(s)	462
HaeII	RGCGCY	1 cut(s)	530
HhaI	GCGC	1 cut(s)	529
Hin1I	GRCGYC	1 cut(s)	527
Hin1II	CATG	1 cut(s)	436
Hin6I	GCGC	1 cut(s)	527
HinP1I	GCGC	1 cut(s)	527
HinfI	GANTC	4 cut(s)	31, 62, 100, 207
Hpy188I	TCNGA	3 cut(s)	39, 278, 589
Hpy188III	TCNNGA	2 cut(s)	173, 481
HpyAV	CCTTC	1 cut(s)	483
HpyCH4III	ACNGT	2 cut(s)	248, 412
HpyCH4V	TGCA	4 cut(s)	328, 334, 404, 464
HpyF10VI	GCNNNNNNNGC	1 cut(s)	367
HpyF3I	CTNAG	3 cut(s)	131, 378, 588
Hsp92I	GRCGYC	1 cut(s)	527
Hsp92II	CATG	1 cut(s)	436
HspAI	GCGC	1 cut(s)	527
KasI	GGCGCC	1 cut(s)	526
Kzo9I	GATC	4 cut(s)	141, 266, 355, 372
LpnPI	CCDG	4 cut(s)	79, 158, 252, 338
Lsp1109I	GCAGC	1 cut(s)	448
LweI	GCATC	1 cut(s)	477
MaeI	CTAG	2 cut(s)	146, 393
MalI	GATC	4 cut(s)	143, 268, 357, 374
MboI	GATC	4 cut(s)	141, 266, 355, 372
MboII	GAAGA	6 cut(s)	26, 31, 173, 291, 365, 400
Mly113I	GGCGCC	1 cut(s)	527
MlyI	GAGTC	2 cut(s)	40, 201
MnlI	CCTC	3 cut(s)	440, 496, 583
MroXI	GAANNNNTTC	1 cut(s)	286
MseI	TTAA	3 cut(s)	222, 321, 578
Mva1269I	GAATGC	1 cut(s)	571
MwoI	GCNNNNNNNGC	1 cut(s)	367
NarI	GGCGCC	1 cut(s)	527
NdeII	GATC	4 cut(s)	141, 266, 355, 372
NlaIII	CATG	1 cut(s)	436
NlaIV	GGNNCC	1 cut(s)	528
NmeAIII	GCCGAG	1 cut(s)	54
PctI	GAATGC	1 cut(s)	571
PdmI	GAANNNNTTC	1 cut(s)	286
PfeI	GAWTC	2 cut(s)	62, 100
PkrI	GCNGC	1 cut(s)	463
PleI	GAGTC	2 cut(s)	39, 201
PluTI	GGCGCC	1 cut(s)	530
PpsI	GAGTC	2 cut(s)	39, 201
PshBI	ATTAAT	1 cut(s)	222
PspN4I	GGNNCC	1 cut(s)	528
SaqAI	TTAA	3 cut(s)	222, 321, 578
SatI	GCNGC	1 cut(s)	462
Sau3AI	GATC	4 cut(s)	141, 266, 355, 372
SchI	GAGTC	2 cut(s)	40, 201
SetI	ASST	5 cut(s)	81, 172, 327, 488, 594
SfaNI	GCATC	1 cut(s)	477
SfoI	GGCGCC	1 cut(s)	528
SspDI	GGCGCC	1 cut(s)	526
SspMI	CTAG	2 cut(s)	146, 393
StyI	CCWWGG	2 cut(s)	145, 504
TaaI	ACNGT	2 cut(s)	248, 412
TfiI	GAWTC	2 cut(s)	62, 100
Tru1I	TTAA	3 cut(s)	222, 321, 578
Tru9I	TTAA	3 cut(s)	222, 321, 578
TscAI	CASTG	1 cut(s)	463
TseI	GCWGC	1 cut(s)	461
TspDTI	ATGAA	3 cut(s)	75, 141, 298
TspGWI	ACGGA	2 cut(s)	63, 575
TspRI	CASTG	1 cut(s)	463
VspI	ATTAAT	1 cut(s)	222
XmaJI	CCTAGG	1 cut(s)	145
XmnI	GAANNNNTTC	1 cut(s)	286
XspI	CTAG	2 cut(s)	146, 393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.