pycom10g28850
MYB Family

Trihelix transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0013499
Physical Location & Seq
Forward (+)
29334672 .. 29335394
723 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 723 bp
ATGGAGCAGCAAGAGCAGATGCATAAGCAGTTAATAGAGATGGTAGAAAAGGAGGAGGAAGAGAGATTAGCAAGAGAAGAAGCCTGGAAGCAGCAGGAGTTAGACAGACTGAAAAGGGATAAGGAGATAAGAGCCCAAGAGATATCTCGCAACCTTGCGCTCATTTCCTTTATCCAGAATTATTTGGCCTATGAAATTCAAGTCCCCCAACCATCAGCAGCAACAGCACCCGAACGAGCACCAGCACCAACAGCAGCACCAATACCAATATCGGTAGTACCTAAATATGATCACCAACGCGTGGAAGGAAATGGGAAGGCAGACAATGGCATGCAGAGAGACCTGATGTTGGTGAGCCATAGTGATGCAACGGATAGAAGATGGCCAGAAGCTGAAGTACAGGCCCTCATAACGCAGCGGGCTGCTTTCAAACACAAGTTTCGCGTTGCAGGTACTCCAAAGGGACGCATATGGGAGGAGATATCTGTTAAGATGCATGAAATGGGCTACGTCCGGTCAGGAAGGAAGTGCAGGGAGAAATGGGAAAACATCAACAAGTATTTCAGAAGGTGCATGGGATCAGACAATAAGCGCCCTGCAAATGCCAAGCTTTGTCCATATTTTCATGAATTGGAGTTGCTCCATAAAAGCGCACTTGTAAGTTTCGGGAATGGCTTTAACCGCACAAGCAACCAGAACGAGGCCAATATTGAAAAACAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

241

Amino Acids

27.9

Weight (kDa)

8.88

Isoelectric Point (pI)

65.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 126 - 213 4.7e-21 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013499)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G47660
fragaria_vesca FvH4_3g00330
malus_domestica MD05G1361500.v1.1 MD10G1338800.v1.1
prunus_persica Prupe.4G003900_v2.0.a1
pyrus_communis pycom05g32800 pycom10g28850
rosa_chinensis RchiOBHm_Chr5g0000511
rosa_laevigata RLG00000030873
rosa_multiflora Rmu_co7961544.1_g000001
rosa_roxburghii Rroxscaffold_1G00075670
rosa_rugosa Rorug04G0384300
rosa_samantha Rh5AG004200 Rh5BG005700 Rh5CG004600 Rh5DG004500 Rh5DG004600
rosa_wichuraiana Rw5G000430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 440
AccB7I CCANNNNNTGG 1 cut(s) 301
AccII CGCG 2 cut(s) 300, 444
AciI CCGC 2 cut(s) 418, 682
AclWI GGATC 1 cut(s) 586
AcoI YGGCCR 1 cut(s) 383
AcsI RAATTY 1 cut(s) 195
AcuI CTGAAG 1 cut(s) 414
AfaI GTAC 3 cut(s) 279, 399, 454
AfiI CCNNNNNNNGG 3 cut(s) 301, 349, 700
AflIII ACRYGT 1 cut(s) 298
AgsI TTSAA 3 cut(s) 200, 430, 713
AjnI CCWGG 1 cut(s) 83
AluBI AGCT 2 cut(s) 392, 610
AluI AGCT 2 cut(s) 392, 610
Alw21I GWGCWC 1 cut(s) 241
Alw26I GTCTC 1 cut(s) 333
AlwI GGATC 1 cut(s) 586
AlwNI CAGNNNCTG 1 cut(s) 392
AoxI GGCC 4 cut(s) 186, 383, 402, 702
ApeKI GCWGC 6 cut(s) 7, 91, 218, 254, 415, 422
ApoI RAATTY 1 cut(s) 195
AspLEI GCGC 3 cut(s) 160, 594, 653
AspS9I GGNCC 1 cut(s) 403
AsuHPI GGTGA 2 cut(s) 284, 364
BalI TGGCCA 1 cut(s) 385
BanII GRGCYC 1 cut(s) 136
BarI GAAGNNNNNNTAC 2 cut(s) 381, 413
Bbv12I GWGCWC 1 cut(s) 241
BbvI GCAGC 6 cut(s) 19, 103, 230, 266, 409, 427
BccI CCATC 3 cut(s) 34, 220, 375
BciT130I CCWGG 1 cut(s) 85
BclI TGATCA 1 cut(s) 289
BcoDI GTCTC 1 cut(s) 333
BfoI RGCGCY 1 cut(s) 595
BfuAI ACCTGC 1 cut(s) 440
BisI GCNGC 6 cut(s) 8, 92, 219, 255, 416, 423
BlsI GCNGC 6 cut(s) 9, 93, 220, 256, 417, 424
Bme1390I CCNGG 1 cut(s) 85
BmgT120I GGNCC 1 cut(s) 403
BmrFI CCNGG 1 cut(s) 85
BmsI GCATC 3 cut(s) 9, 355, 483
BsaI GGTCTC 1 cut(s) 333
BsaWI WCCGGW 1 cut(s) 513
Bsc4I CCNNNNNNNGG 3 cut(s) 301, 349, 700
BseBI CCWGG 1 cut(s) 85
BseLI CCNNNNNNNGG 3 cut(s) 301, 349, 700
BseRI GAGGAG 2 cut(s) 68, 491
BseXI GCAGC 6 cut(s) 19, 103, 230, 266, 409, 427
BsgI GTGCAG 1 cut(s) 550
Bsh1236I CGCG 2 cut(s) 300, 444
BshFI GGCC 4 cut(s) 188, 385, 404, 704
BsiHKAI GWGCWC 1 cut(s) 241
BsiSI CCGG 1 cut(s) 514
BslFI GGGAC 2 cut(s) 188, 477
BslI CCNNNNNNNGG 3 cut(s) 301, 349, 700
BsmAI GTCTC 1 cut(s) 333
BsmFI GGGAC 2 cut(s) 188, 477
BsnI GGCC 4 cut(s) 188, 385, 404, 704
Bso31I GGTCTC 1 cut(s) 333
Bsp1286I GDGCHC 2 cut(s) 136, 241
Bsp143I GATC 2 cut(s) 289, 578
BspACI CCGC 2 cut(s) 418, 682
BspANI GGCC 4 cut(s) 188, 385, 404, 704
BspFNI CGCG 2 cut(s) 300, 444
BspHI TCATGA 1 cut(s) 625
BspMI ACCTGC 1 cut(s) 440
BspPI GGATC 1 cut(s) 586
BspTNI GGTCTC 1 cut(s) 333
BssMI GATC 2 cut(s) 289, 578
Bst2UI CCWGG 1 cut(s) 85
Bst4CI ACNGT 1 cut(s) 720
Bst6I CTCTTC 1 cut(s) 54
BstC8I GCNNGC 2 cut(s) 332, 420
BstFNI CGCG 2 cut(s) 300, 444
BstH2I RGCGCY 1 cut(s) 595
BstHHI GCGC 3 cut(s) 160, 594, 653
BstKTI GATC 2 cut(s) 292, 581
BstMAI GTCTC 1 cut(s) 333
BstMBI GATC 2 cut(s) 289, 578
BstMWI GCNNNNNNNGC 4 cut(s) 13, 224, 251, 681
BstNI CCWGG 1 cut(s) 85
BstNSI RCATGY 1 cut(s) 334
BstSCI CCNGG 1 cut(s) 83
BstUI CGCG 2 cut(s) 300, 444
BstV1I GCAGC 6 cut(s) 19, 103, 230, 266, 409, 427
BsuRI GGCC 4 cut(s) 188, 385, 404, 704
BveI ACCTGC 1 cut(s) 440
Cac8I GCNNGC 2 cut(s) 332, 420
CaiI CAGNNNCTG 1 cut(s) 392
CciI TCATGA 1 cut(s) 625
CfoI GCGC 3 cut(s) 160, 594, 653
Cfr13I GGNCC 1 cut(s) 403
CseI GACGC 1 cut(s) 474
Csp6I GTAC 3 cut(s) 278, 398, 453
CviAII CATG 4 cut(s) 331, 497, 574, 626
CviQI GTAC 3 cut(s) 278, 398, 453
DpnI GATC 2 cut(s) 291, 580
DpnII GATC 2 cut(s) 289, 578
EaeI YGGCCR 1 cut(s) 383
Eam1104I CTCTTC 1 cut(s) 54
EarI CTCTTC 1 cut(s) 54
Eco24I GRGCYC 1 cut(s) 136
Eco31I GGTCTC 1 cut(s) 333
Eco32I GATATC 2 cut(s) 144, 483
Eco57I CTGAAG 1 cut(s) 414
EcoO109I RGGNCCY 1 cut(s) 403
EcoRII CCWGG 1 cut(s) 83
EcoRV GATATC 2 cut(s) 144, 483
EcoT22I ATGCAT 2 cut(s) 24, 498
EcoT38I GRGCYC 1 cut(s) 136
FaeI CATG 4 cut(s) 334, 500, 577, 629
FaqI GGGAC 2 cut(s) 188, 477
FatI CATG 4 cut(s) 330, 496, 573, 625
FauI CCCGC 1 cut(s) 411
FauNDI CATATG 1 cut(s) 470
FbaI TGATCA 1 cut(s) 289
Fnu4HI GCNGC 6 cut(s) 8, 92, 219, 255, 416, 423
FriOI GRGCYC 1 cut(s) 136
Fsp4HI GCNGC 6 cut(s) 8, 92, 219, 255, 416, 423
GlaI GCGC 3 cut(s) 159, 593, 652
GluI GCNGC 6 cut(s) 8, 92, 219, 255, 416, 423
HaeII RGCGCY 1 cut(s) 595
HaeIII GGCC 4 cut(s) 188, 385, 404, 704
HapII CCGG 1 cut(s) 514
HgaI GACGC 1 cut(s) 474
HhaI GCGC 3 cut(s) 160, 594, 653
Hin1II CATG 4 cut(s) 334, 500, 577, 629
Hin6I GCGC 3 cut(s) 158, 592, 651
HinP1I GCGC 3 cut(s) 158, 592, 651
HindIII AAGCTT 1 cut(s) 608
HpaII CCGG 1 cut(s) 514
HphI GGTGA 2 cut(s) 284, 364
Hpy188I TCNGA 2 cut(s) 566, 583
Hpy188III TCNNGA 4 cut(s) 175, 519, 626, 667
HpyAV CCTTC 4 cut(s) 299, 310, 516, 561
HpyCH4III ACNGT 1 cut(s) 720
HpyCH4IV ACGT 1 cut(s) 510
HpyCH4V TGCA 8 cut(s) 22, 334, 368, 449, 496, 531, 573, 599
HpyF10VI GCNNNNNNNGC 4 cut(s) 13, 224, 251, 681
HpySE526I ACGT 1 cut(s) 510
Hsp92II CATG 4 cut(s) 334, 500, 577, 629
HspAI GCGC 3 cut(s) 158, 592, 651
Ksp22I TGATCA 1 cut(s) 289
Kzo9I GATC 2 cut(s) 289, 578
LmnI GCTCC 2 cut(s) 4, 645
Lsp1109I GCAGC 6 cut(s) 19, 103, 230, 266, 409, 427
LweI GCATC 3 cut(s) 9, 355, 483
MaeII ACGT 1 cut(s) 510
MalI GATC 2 cut(s) 291, 580
MboI GATC 2 cut(s) 289, 578
MboII GAAGA 3 cut(s) 71, 89, 390
MhlI GDGCHC 2 cut(s) 136, 241
MlsI TGGCCA 1 cut(s) 385
MluCI AATT 3 cut(s) 178, 195, 629
MluI ACGCGT 1 cut(s) 298
MluNI TGGCCA 1 cut(s) 385
MnlI CCTC 5 cut(s) 46, 49, 416, 469, 694
Mox20I TGGCCA 1 cut(s) 385
Mph1103I ATGCAT 2 cut(s) 24, 498
MscI TGGCCA 1 cut(s) 385
MseI TTAA 3 cut(s) 32, 489, 678
MslI CAYNNNNRTG 1 cut(s) 363
Msp20I TGGCCA 1 cut(s) 385
MspA1I CMGCKG 1 cut(s) 418
MspI CCGG 1 cut(s) 514
MspR9I CCNGG 1 cut(s) 85
MvaI CCWGG 1 cut(s) 85
MvnI CGCG 2 cut(s) 300, 444
MwoI GCNNNNNNNGC 4 cut(s) 13, 224, 251, 681
NdeI CATATG 1 cut(s) 470
NdeII GATC 2 cut(s) 289, 578
NlaIII CATG 4 cut(s) 334, 500, 577, 629
NsiI ATGCAT 2 cut(s) 24, 498
NspI RCATGY 1 cut(s) 334
PaeI GCATGC 1 cut(s) 334
PagI TCATGA 1 cut(s) 625
PflMI CCANNNNNTGG 1 cut(s) 301
PkrI GCNGC 6 cut(s) 9, 93, 220, 256, 417, 424
Psp6I CCWGG 1 cut(s) 83
PspGI CCWGG 1 cut(s) 83
PspPI GGNCC 1 cut(s) 403
PstNI CAGNNNCTG 1 cut(s) 392
RsaI GTAC 3 cut(s) 279, 399, 454
RsaNI GTAC 3 cut(s) 278, 398, 453
RseI CAYNNNNRTG 1 cut(s) 363
SaqAI TTAA 3 cut(s) 32, 489, 678
SatI GCNGC 6 cut(s) 8, 92, 219, 255, 416, 423
Sau3AI GATC 2 cut(s) 289, 578
Sau96I GGNCC 1 cut(s) 403
ScrFI CCNGG 1 cut(s) 85
SduI GDGCHC 2 cut(s) 136, 241
SetI ASST 8 cut(s) 156, 283, 345, 394, 454, 513, 572, 612
SfaNI GCATC 3 cut(s) 9, 355, 483
SmiMI CAYNNNNRTG 1 cut(s) 363
SphI GCATGC 1 cut(s) 334
Sse9I AATT 3 cut(s) 178, 195, 629
SsiI CCGC 2 cut(s) 418, 682
SspI AATATT 1 cut(s) 709
StyD4I CCNGG 1 cut(s) 83
TaaI ACNGT 1 cut(s) 720
TaiI ACGT 1 cut(s) 513
TasI AATT 3 cut(s) 178, 195, 629
TatI WGTACW 1 cut(s) 397
Tru1I TTAA 3 cut(s) 32, 489, 678
Tru9I TTAA 3 cut(s) 32, 489, 678
TseI GCWGC 6 cut(s) 7, 91, 218, 254, 415, 422
TspDTI ATGAA 4 cut(s) 207, 513, 614, 642
TspGWI ACGGA 1 cut(s) 386
Van91I CCANNNNNTGG 1 cut(s) 301
XapI RAATTY 1 cut(s) 195
XceI RCATGY 1 cut(s) 334
Zsp2I ATGCAT 2 cut(s) 24, 498
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.