Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0007490

Physical Location & Seq

Genomic Coordinates Forward (+)

29536247 .. 29537941

Gene Structure 1695 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGACCGATATATCCAAGGATGCTTCCTACCTTCTAGAAAGCCCTGGTACCGGTAATTCTTCACCAAATTTGCCAACTTCTGATTTGAATGAGGGTTATGAAGTTAAGGAGGCATTGCGAGCACAGATGGAAGTGCAAAGTAAATTACATGTGCAAGTTGAGGCTGAGAAGCACTTGCAGATTCGCCAGGATGCAGAACGAAGATATATGGCCATGCTTGAGAGAGCTTGTAAGATGCTTGATGATCAATTCATTGGAGGTTCAGTTACTGATACAGACAGCCATAAATGTCATGGGTCGGGAAATAAGAACCCAAAAGGTTCCTCCATTGACATGCTTGGCTTCTACACATTGCAATCCACAGATGTAGTTGGGGTTCATGGTCCAGATGAAGAGCTGCCAATTAGTATCCATACCCAGAGAGCTGATTGCTCCACTGAAAGCTGCCTCACGTCACATGAGAGCCCTGGAGGACTGACCTTGGAAGGATCGATCGATCCAGGTGGTGGGAAAAAAAGAATGTTGAGCTTGGACACCGGCAATGGATCTTTAGTTTGGGGCGAAGCCAAGGTGAGAACCCAAGAGATTAATATAGCCCCAATTGATCCTCCTCGTGGGATTGTTAGGTATGGCATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

213

Amino Acids

23.0

Weight (kDa)

5.14

Isoelectric Point (pI)

47.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_CC_LHEQLE	PF14379	34 - 79	2.3e-16	MYB-CC type transfactor, LHEQLE motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007490)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g00080 FvH4_3g00080
malus_domestica	MD05G1364200.v1.1 MD10G1342000.v1.1
prunus_persica	Prupe.4G000800_v2.0.a1 Prupe.4G000800_v2.0.a1 Prupe.4G000800_v2.0.a1 Prupe.4G000800_v2.0.a1
pyrus_communis	pycom05g33040 pycom05g33050 pycom10g29140
rosa_chinensis	RchiOBHm_Chr5g0000111
rosa_laevigata	RLG00000030842
rosa_multiflora	Rmu_co8141848.1_g000001 Rmu_sc0027134.1_g000002 Rmu_ssc0000243.1_g000020
rosa_roxburghii	Rroxscaffold_1G00075990
rosa_rugosa	Rorug04G0381600 Rorug04G0381600 Rorug04G0381600
rosa_samantha	Rh5AG000700 Rh5BG001900 Rh5CG000800 Rh5DG000700
rosa_wichuraiana	Rw5G000100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	47
AccB1I	GGYRCC	1 cut(s)	47
AccB7I	CCANNNNNTGG	1 cut(s)	506
AclWI	GGATC	4 cut(s)	491, 496, 553, 599
AcoI	YGGCCR	1 cut(s)	210
AcsI	RAATTY	1 cut(s)	67
AfaI	GTAC	1 cut(s)	49
AfiI	CCNNNNNNNGG	3 cut(s)	50, 506, 614
AflIII	ACRYGT	1 cut(s)	148
AgeI	ACCGGT	1 cut(s)	50
AgsI	TTSAA	1 cut(s)	88
AjiI	CACGTC	1 cut(s)	453
AjnI	CCWGG	4 cut(s)	43, 186, 466, 499
AluBI	AGCT	5 cut(s)	227, 397, 425, 444, 528
AluI	AGCT	5 cut(s)	227, 397, 425, 444, 528
Alw21I	GWGCWC	1 cut(s)	124
AlwI	GGATC	4 cut(s)	491, 496, 553, 599
AlwNI	CAGNNNCTG	1 cut(s)	269
AoxI	GGCC	1 cut(s)	210
ApeKI	GCWGC	2 cut(s)	397, 444
ApoI	RAATTY	1 cut(s)	67
AseI	ATTAAT	1 cut(s)	588
AsiGI	ACCGGT	1 cut(s)	50
Asp718I	GGTACC	1 cut(s)	47
AspS9I	GGNCC	1 cut(s)	383
AsuHPI	GGTGA	2 cut(s)	54, 583
AvaII	GGWCC	1 cut(s)	383
BalI	TGGCCA	1 cut(s)	212
BanI	GGYRCC	1 cut(s)	47
BanII	GRGCYC	1 cut(s)	467
BauI	CACGAG	1 cut(s)	612
Bbv12I	GWGCWC	1 cut(s)	124
BbvI	GCAGC	2 cut(s)	384, 431
BccI	CCATC	1 cut(s)	121
BciT130I	CCWGG	4 cut(s)	45, 188, 468, 501
BciVI	GTATCC	1 cut(s)	419
BclI	TGATCA	1 cut(s)	244
BfaI	CTAG	1 cut(s)	35
BfuI	GTATCC	1 cut(s)	419
BisI	GCNGC	2 cut(s)	398, 445
BlsI	GCNGC	2 cut(s)	399, 446
Bme1390I	CCNGG	4 cut(s)	45, 188, 468, 501
Bme18I	GGWCC	1 cut(s)	383
BmgBI	CACGTC	1 cut(s)	453
BmgT120I	GGNCC	1 cut(s)	383
BmiI	GGNNCC	2 cut(s)	49, 322
BmrFI	CCNGG	4 cut(s)	45, 188, 468, 501
BmsI	GCATC	3 cut(s)	10, 181, 225
BpmI	CTGGAG	1 cut(s)	489
BpuEI	CTTGAG	1 cut(s)	239
Bsa29I	ATCGAT	2 cut(s)	491, 495
BsaJI	CCNNGG	5 cut(s)	15, 43, 466, 480, 567
BsaWI	WCCGGW	1 cut(s)	50
BsaXI	ACNNNNNCTCC	2 cut(s)	249, 279
Bsc4I	CCNNNNNNNGG	3 cut(s)	50, 506, 614
Bse118I	RCCGGY	2 cut(s)	50, 536
Bse3DI	GCAATG	3 cut(s)	113, 350, 547
BseBI	CCWGG	4 cut(s)	45, 188, 468, 501
BseCI	ATCGAT	2 cut(s)	491, 495
BseDI	CCNNGG	5 cut(s)	15, 43, 466, 480, 567
BseGI	GGATG	2 cut(s)	25, 196
BseLI	CCNNNNNNNGG	3 cut(s)	50, 506, 614
BseMI	GCAATG	3 cut(s)	113, 350, 547
BseMII	CTCAG	1 cut(s)	156
BseRI	GAGGAG	1 cut(s)	600
BseXI	GCAGC	2 cut(s)	384, 431
Bsh1285I	CGRYCG	1 cut(s)	495
BshFI	GGCC	1 cut(s)	212
BshNI	GGYRCC	1 cut(s)	47
BshTI	ACCGGT	1 cut(s)	50
BshVI	ATCGAT	2 cut(s)	491, 495
BsiEI	CGRYCG	1 cut(s)	495
BsiHKAI	GWGCWC	1 cut(s)	124
BsiSI	CCGG	2 cut(s)	51, 537
BslI	CCNNNNNNNGG	3 cut(s)	50, 506, 614
BsnI	GGCC	1 cut(s)	212
Bsp1286I	GDGCHC	2 cut(s)	124, 467
Bsp143I	GATC	6 cut(s)	244, 488, 492, 496, 545, 604
BspANI	GGCC	1 cut(s)	212
BspCNI	CTCAG	1 cut(s)	157
BspDI	ATCGAT	2 cut(s)	491, 495
BspLI	GGNNCC	2 cut(s)	49, 322
BspPI	GGATC	4 cut(s)	491, 496, 553, 599
BspQI	GCTCTTC	1 cut(s)	387
BspT107I	GGYRCC	1 cut(s)	47
BsrDI	GCAATG	3 cut(s)	113, 350, 547
BsrFI	RCCGGY	2 cut(s)	50, 536
BssAI	RCCGGY	2 cut(s)	50, 536
BssECI	CCNNGG	5 cut(s)	15, 43, 466, 480, 567
BssMI	GATC	6 cut(s)	244, 488, 492, 496, 545, 604
BssSI	CACGAG	1 cut(s)	612
BssT1I	CCWWGG	3 cut(s)	15, 480, 567
Bst2BI	CACGAG	1 cut(s)	612
Bst2UI	CCWGG	4 cut(s)	45, 188, 468, 501
Bst6I	CTCTTC	1 cut(s)	387
BstC8I	GCNNGC	1 cut(s)	120
BstDEI	CTNAG	1 cut(s)	165
BstF5I	GGATG	2 cut(s)	25, 196
BstKTI	GATC	6 cut(s)	247, 491, 495, 499, 548, 607
BstMBI	GATC	6 cut(s)	244, 488, 492, 496, 545, 604
BstMCI	CGRYCG	1 cut(s)	495
BstMWI	GCNNNNNNNGC	1 cut(s)	119
BstNI	CCWGG	4 cut(s)	45, 188, 468, 501
BstNSI	RCATGY	3 cut(s)	152, 337, 637
BstSCI	CCNGG	4 cut(s)	43, 186, 466, 499
BstV1I	GCAGC	2 cut(s)	384, 431
BstX2I	RGATCY	1 cut(s)	545
BstYI	RGATCY	1 cut(s)	545
Bsu15I	ATCGAT	2 cut(s)	491, 495
BsuI	GTATCC	1 cut(s)	419
BsuRI	GGCC	1 cut(s)	212
BsuTUI	ATCGAT	2 cut(s)	491, 495
BtrI	CACGTC	1 cut(s)	453
BtsCI	GGATG	2 cut(s)	25, 196
BtsIMutI	CAGTG	1 cut(s)	435
Cac8I	GCNNGC	1 cut(s)	120
CaiI	CAGNNNCTG	1 cut(s)	269
Cfr10I	RCCGGY	2 cut(s)	50, 536
Cfr13I	GGNCC	1 cut(s)	383
ClaI	ATCGAT	2 cut(s)	491, 495
Csp6I	GTAC	1 cut(s)	48
CspAI	ACCGGT	1 cut(s)	50
CviAII	CATG	7 cut(s)	149, 214, 293, 334, 380, 458, 634
CviQI	GTAC	1 cut(s)	48
DdeI	CTNAG	1 cut(s)	165
DpnI	GATC	6 cut(s)	246, 490, 494, 498, 547, 606
DpnII	GATC	6 cut(s)	244, 488, 492, 496, 545, 604
EaeI	YGGCCR	1 cut(s)	210
Eam1104I	CTCTTC	1 cut(s)	387
EarI	CTCTTC	1 cut(s)	387
Eco130I	CCWWGG	3 cut(s)	15, 480, 567
Eco24I	GRGCYC	1 cut(s)	467
Eco47I	GGWCC	1 cut(s)	383
EcoRII	CCWGG	4 cut(s)	43, 186, 466, 499
EcoT14I	CCWWGG	3 cut(s)	15, 480, 567
EcoT38I	GRGCYC	1 cut(s)	467
ErhI	CCWWGG	3 cut(s)	15, 480, 567
FaeI	CATG	7 cut(s)	152, 217, 296, 337, 383, 461, 637
FatI	CATG	7 cut(s)	148, 213, 292, 333, 379, 457, 633
FbaI	TGATCA	1 cut(s)	244
Fnu4HI	GCNGC	2 cut(s)	398, 445
FokI	GGATG	2 cut(s)	32, 203
FriOI	GRGCYC	1 cut(s)	467
Fsp4HI	GCNGC	2 cut(s)	398, 445
FspBI	CTAG	1 cut(s)	35
GluI	GCNGC	2 cut(s)	398, 445
GsuI	CTGGAG	1 cut(s)	489
HaeIII	GGCC	1 cut(s)	212
HapII	CCGG	2 cut(s)	51, 537
Hin1II	CATG	7 cut(s)	152, 217, 296, 337, 383, 461, 637
HinfI	GANTC	1 cut(s)	181
HpaII	CCGG	2 cut(s)	51, 537
HphI	GGTGA	2 cut(s)	54, 583
Hpy188I	TCNGA	1 cut(s)	82
Hpy188III	TCNNGA	3 cut(s)	35, 300, 386
HpyAV	CCTTC	2 cut(s)	41, 479
HpyCH4IV	ACGT	1 cut(s)	452
HpyCH4V	TGCA	5 cut(s)	136, 154, 178, 194, 355
HpyF10VI	GCNNNNNNNGC	1 cut(s)	119
HpyF3I	CTNAG	1 cut(s)	165
HpySE526I	ACGT	1 cut(s)	452
Hsp92II	CATG	7 cut(s)	152, 217, 296, 337, 383, 461, 637
KpnI	GGTACC	1 cut(s)	51
Ksp22I	TGATCA	1 cut(s)	244
Kzo9I	GATC	6 cut(s)	244, 488, 492, 496, 545, 604
LguI	GCTCTTC	1 cut(s)	387
LmnI	GCTCC	1 cut(s)	437
Lsp1109I	GCAGC	2 cut(s)	384, 431
LweI	GCATC	3 cut(s)	10, 181, 225
MaeI	CTAG	1 cut(s)	35
MaeII	ACGT	1 cut(s)	452
MaeIII	GTNAC	2 cut(s)	265, 453
MalI	GATC	6 cut(s)	246, 490, 494, 498, 547, 606
MboI	GATC	6 cut(s)	244, 488, 492, 496, 545, 604
MboII	GAAGA	3 cut(s)	51, 213, 404
MfeI	CAATTG	1 cut(s)	600
MflI	RGATCY	1 cut(s)	545
MhlI	GDGCHC	2 cut(s)	124, 467
MlsI	TGGCCA	1 cut(s)	212
MluCI	AATT	6 cut(s)	55, 67, 143, 248, 402, 600
MluNI	TGGCCA	1 cut(s)	212
MnlI	CCTC	9 cut(s)	85, 103, 154, 251, 334, 458, 464, 618, 621
Mox20I	TGGCCA	1 cut(s)	212
MscI	TGGCCA	1 cut(s)	212
MseI	TTAA	2 cut(s)	105, 588
MslI	CAYNNNNRTG	1 cut(s)	332
Msp20I	TGGCCA	1 cut(s)	212
MspI	CCGG	2 cut(s)	51, 537
MspR9I	CCNGG	4 cut(s)	45, 188, 468, 501
MunI	CAATTG	1 cut(s)	600
MvaI	CCWGG	4 cut(s)	45, 188, 468, 501
MwoI	GCNNNNNNNGC	1 cut(s)	119
NdeII	GATC	6 cut(s)	244, 488, 492, 496, 545, 604
NlaIII	CATG	7 cut(s)	152, 217, 296, 337, 383, 461, 637
NlaIV	GGNNCC	2 cut(s)	49, 322
NmuCI	GTSAC	1 cut(s)	453
NspI	RCATGY	3 cut(s)	152, 337, 637
PciI	ACATGT	1 cut(s)	148
PciSI	GCTCTTC	1 cut(s)	387
PfeI	GAWTC	1 cut(s)	181
PflMI	CCANNNNNTGG	1 cut(s)	506
PinAI	ACCGGT	1 cut(s)	50
PkrI	GCNGC	2 cut(s)	399, 446
Ple19I	CGATCG	1 cut(s)	495
PscI	ACATGT	1 cut(s)	148
PshBI	ATTAAT	1 cut(s)	588
Psp6I	CCWGG	4 cut(s)	43, 186, 466, 499
PspGI	CCWGG	4 cut(s)	43, 186, 466, 499
PspN4I	GGNNCC	2 cut(s)	49, 322
PspPI	GGNCC	1 cut(s)	383
PsrI	GAACNNNNNNTAC	2 cut(s)	360, 392
PstNI	CAGNNNCTG	1 cut(s)	269
PsuI	RGATCY	1 cut(s)	545
PvuI	CGATCG	1 cut(s)	495
RsaI	GTAC	1 cut(s)	49
RsaNI	GTAC	1 cut(s)	48
RseI	CAYNNNNRTG	1 cut(s)	332
SapI	GCTCTTC	1 cut(s)	387
SaqAI	TTAA	2 cut(s)	105, 588
SatI	GCNGC	2 cut(s)	398, 445
Sau3AI	GATC	6 cut(s)	244, 488, 492, 496, 545, 604
Sau96I	GGNCC	1 cut(s)	383
ScrFI	CCNGG	4 cut(s)	45, 188, 468, 501
SduI	GDGCHC	2 cut(s)	124, 467
SfaNI	GCATC	3 cut(s)	10, 181, 225
SinI	GGWCC	1 cut(s)	383
SmiMI	CAYNNNNRTG	1 cut(s)	332
SmlI	CTYRAG	1 cut(s)	218
SmoI	CTYRAG	1 cut(s)	218
Sse9I	AATT	6 cut(s)	55, 67, 143, 248, 402, 600
SspMI	CTAG	1 cut(s)	35
StyD4I	CCNGG	4 cut(s)	43, 186, 466, 499
StyI	CCWWGG	3 cut(s)	15, 480, 567
TaiI	ACGT	1 cut(s)	455
TaqI	TCGA	2 cut(s)	491, 495
TaqII	GACCGA	1 cut(s)	20
TasI	AATT	6 cut(s)	55, 67, 143, 248, 402, 600
TfiI	GAWTC	1 cut(s)	181
Tru1I	TTAA	2 cut(s)	105, 588
Tru9I	TTAA	2 cut(s)	105, 588
TscAI	CASTG	1 cut(s)	442
TseFI	GTSAC	1 cut(s)	453
TseI	GCWGC	2 cut(s)	397, 444
Tsp45I	GTSAC	1 cut(s)	453
TspDTI	ATGAA	4 cut(s)	114, 241, 368, 405
TspRI	CASTG	1 cut(s)	442
Van91I	CCANNNNNTGG	1 cut(s)	506
VpaK11BI	GGWCC	1 cut(s)	383
VspI	ATTAAT	1 cut(s)	588
XapI	RAATTY	1 cut(s)	67
XbaI	TCTAGA	1 cut(s)	34
XceI	RCATGY	3 cut(s)	152, 337, 637
XcmI	CCANNNNNNNNNTGG	1 cut(s)	290
XspI	CTAG	1 cut(s)	35

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.