Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

OG0005371

Physical Location & Seq

Genomic Coordinates Reverse (-)

1444552 .. 1446929

Gene Structure 2378 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGATTCAAAAGCGATTTTGCGGCGAAGTTGTTACAGAAGCAAACAGACCACAAGACACATATATCTTCTTCTCTGCGCTCTCTCCGCAGTCGTTTGACGCTTACTGTGTGGTCATGGCTTGCGTTGCTTCGCTCCACCCACTGTCTTCTTCCTCCCGCGCTCTCTTTCCACCTCTCTGCCGCCAGTCGACGATTCCCGCCATCTTCCACCGGCTCAAGAGTTTCTCCTCAACCAGCCGCCTAGTATCCACCGTGAACCGGTTGAGCCCGGTCCGGGCGCAGGCCAAGCGAGGGTTCTCACTCAAAGAAGACGAAGTGGCCTCCGCTGCGGATGTGGAATTTGAAATCCCTCTGAAAATTGTGGAATACCCGGACCCGATTCTGAGAGCGAAGAACAAGCGAATCGATTCTTTCGACGATAATTTGAAGAATTTGGTAGATGAAATGTTTGATGTAATGTACAGAACTGATGGAATAGGGCTCTCAGCGCCACAAGTAGGGATCAATGTGCAGCTCATGGTTTTTAATCCAGTTGGTGAGCGCGGTGAAGGGGAGGAAATTGTGCTTGTGAATCCAAGGGTTACCAGATATTCTCAGAAAACACGACCCTTTAATGAGGGTTGCTTATCCTTCCCGGGGATTTATGCTGATGTTGTAAGACCAGAAACTGTGAAAATAGATGCACGGGACATCAAGGGTGCGAGGTTTACAGTCAGCTTATCAGGTCTTCCAGCACGGGTGTTCCAGCATGAATTCGACCATTTGCAGGGAGTTCTCTTTTTCGATAGAATGAGTGAAGGAGTTCTTGAAACCATTTGTGCACAGCTACAGGCGTTAGAAAAGAAGTACGAGGATAGGACAGGACTCCCGAGTCCTGAAAGGGTTGAAACCCGCAGAAGGATGAAGGCTGCTACTGGTTTTGGAAAATCACAATTAGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016787 GO:0016810 GO:0016811 GO:0018193 GO:0018206 GO:0019538 GO:0031365 GO:0036211 GO:0042586 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043686 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pep_deformylase

Protein Analysis

314

Amino Acids

35.11

Weight (kDa)

8.48

Isoelectric Point (pI)

47.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pep_deformylase	PF01327	118 - 266	1.7e-51	Polypeptide deformylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005371)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14660 AT5G14660 AT5G14660
fragaria_vesca	FvH4_6g50950 FvH4_6g50950 FvH4_6g50950 FvH4_6g50950 FvH4_6g50950
malus_domestica	MD09G1030300.v1.1 MD17G1032100.v1.1
prunus_persica	Prupe.3G287100_v2.0.a1
pyrus_communis	pycom111g02430 pycom17g02970
rosa_chinensis	RchiOBHm_Chr2g0172351
rosa_laevigata	RLG00000022106
rosa_multiflora	Rmu_sc0000467.1_g000010 Rmu_sc0004498.1_g000002
rosa_roxburghii	Rroxscaffold_2G00079960 Rroxscaffold_2G00115080 Rroxscaffold_5G00361130
rosa_rugosa	Rorug02G0558700
rosa_samantha	Rh2BG647500 Rh2CG614400 Rh2DG585500 Rh2DG662300 Rh4BG378100 Rh4CG024900 Rh4CG392200
rosa_wichuraiana	Rw2G052490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	870
AccI	GTMKAC	1 cut(s)	188
AccII	CGCG	2 cut(s)	159, 543
AclWI	GGATC	1 cut(s)	509
AcsI	RAATTY	3 cut(s)	338, 430, 752
AfaI	GTAC	2 cut(s)	461, 848
AfiI	CCNNNNNNNGG	8 cut(s)	258, 274, 280, 291, 497, 636, 766, 897
AgeI	ACCGGT	1 cut(s)	258
AgsI	TTSAA	5 cut(s)	8, 344, 427, 809, 887
AjuI	GAANNNNNNNTTGG	2 cut(s)	278, 310
AluBI	AGCT	3 cut(s)	514, 717, 826
AluI	AGCT	3 cut(s)	514, 717, 826
Alw21I	GWGCWC	1 cut(s)	823
Alw44I	GTGCAC	1 cut(s)	819
AlwI	GGATC	1 cut(s)	509
AlwNI	CAGNNNCTG	1 cut(s)	668
Ama87I	CYCGRG	2 cut(s)	634, 868
AoxI	GGCC	2 cut(s)	282, 318
ApaLI	GTGCAC	1 cut(s)	819
ApeKI	GCWGC	3 cut(s)	326, 511, 908
ApoI	RAATTY	3 cut(s)	338, 430, 752
AsiGI	ACCGGT	1 cut(s)	258
Asp700I	GAANNNNTTC	2 cut(s)	406, 801
AspLEI	GCGC	5 cut(s)	79, 161, 280, 490, 543
AspS9I	GGNCC	2 cut(s)	271, 373
AsuC2I	CCSGG	5 cut(s)	269, 275, 371, 635, 636
AsuHPI	GGTGA	2 cut(s)	548, 557
AvaI	CYCGRG	2 cut(s)	634, 868
AvaII	GGWCC	2 cut(s)	271, 373
BaeGI	GKGCMC	1 cut(s)	823
BanII	GRGCYC	2 cut(s)	269, 483
BbsI	GAAGAC	3 cut(s)	138, 315, 719
Bbv12I	GWGCWC	1 cut(s)	823
BbvI	GCAGC	3 cut(s)	313, 523, 895
BccI	CCATC	2 cut(s)	209, 464
BciVI	GTATCC	1 cut(s)	256
BcnI	CCSGG	5 cut(s)	269, 275, 371, 635, 636
BfaI	CTAG	1 cut(s)	242
BfmI	CTRYAG	1 cut(s)	827
BfoI	RGCGCY	1 cut(s)	491
BfuI	GTATCC	1 cut(s)	256
BisI	GCNGC	6 cut(s)	22, 181, 238, 327, 512, 909
BlsI	GCNGC	6 cut(s)	23, 182, 239, 328, 513, 910
Bme1390I	CCNGG	5 cut(s)	269, 275, 371, 635, 636
Bme18I	GGWCC	2 cut(s)	271, 373
BmeT110I	CYCGRG	2 cut(s)	634, 868
BmgT120I	GGNCC	2 cut(s)	271, 373
BmiI	GGNNCC	1 cut(s)	375
BmrFI	CCNGG	5 cut(s)	269, 275, 371, 635, 636
BmsI	GCATC	1 cut(s)	670
BpiI	GAAGAC	3 cut(s)	138, 315, 719
BpuEI	CTTGAG	1 cut(s)	200
BpuMI	CCSGG	5 cut(s)	269, 275, 371, 635, 636
Bsa29I	ATCGAT	1 cut(s)	405
BsaJI	CCNNGG	3 cut(s)	575, 634, 635
BsaWI	WCCGGW	1 cut(s)	258
Bsc4I	CCNNNNNNNGG	8 cut(s)	258, 274, 280, 291, 497, 636, 766, 897
Bse118I	RCCGGY	2 cut(s)	210, 258
Bse1I	ACTGG	3 cut(s)	184, 530, 919
BseCI	ATCGAT	1 cut(s)	405
BseDI	CCNNGG	3 cut(s)	575, 634, 635
BseGI	GGATG	2 cut(s)	337, 906
BseLI	CCNNNNNNNGG	8 cut(s)	258, 274, 280, 291, 497, 636, 766, 897
BseMII	CTCAG	3 cut(s)	374, 498, 608
BseNI	ACTGG	3 cut(s)	184, 530, 919
BseRI	GAGGAG	1 cut(s)	217
BseSI	GKGCMC	1 cut(s)	823
BseXI	GCAGC	3 cut(s)	313, 523, 895
BsgI	GTGCAG	1 cut(s)	530
Bsh1236I	CGCG	2 cut(s)	159, 543
BshFI	GGCC	2 cut(s)	284, 320
BshTI	ACCGGT	1 cut(s)	258
BshVI	ATCGAT	1 cut(s)	405
BsiHKAI	GWGCWC	1 cut(s)	823
BsiHKCI	CYCGRG	2 cut(s)	634, 868
BsiSI	CCGG	6 cut(s)	211, 259, 269, 274, 371, 635
BslFI	GGGAC	1 cut(s)	701
BslI	CCNNNNNNNGG	8 cut(s)	258, 274, 280, 291, 497, 636, 766, 897
BsmFI	GGGAC	1 cut(s)	701
BsnI	GGCC	2 cut(s)	284, 320
BsoBI	CYCGRG	2 cut(s)	634, 868
Bsp1286I	GDGCHC	3 cut(s)	269, 483, 823
Bsp1407I	TGTACA	1 cut(s)	459
Bsp143I	GATC	1 cut(s)	501
BspANI	GGCC	2 cut(s)	284, 320
BspCNI	CTCAG	3 cut(s)	375, 497, 607
BspDI	ATCGAT	1 cut(s)	405
BspFNI	CGCG	2 cut(s)	159, 543
BspLI	GGNNCC	1 cut(s)	375
BspPI	GGATC	1 cut(s)	509
BsrFI	RCCGGY	2 cut(s)	210, 258
BsrGI	TGTACA	1 cut(s)	459
BsrI	ACTGG	3 cut(s)	184, 530, 919
BssAI	RCCGGY	2 cut(s)	210, 258
BssECI	CCNNGG	3 cut(s)	575, 634, 635
BssMI	GATC	1 cut(s)	501
BssT1I	CCWWGG	1 cut(s)	575
Bst4CI	ACNGT	5 cut(s)	107, 144, 253, 670, 712
BstAUI	TGTACA	1 cut(s)	459
BstC8I	GCNNGC	2 cut(s)	121, 282
BstDEI	CTNAG	3 cut(s)	383, 484, 594
BstEII	GGTNACC	1 cut(s)	580
BstF5I	GGATG	2 cut(s)	337, 906
BstFNI	CGCG	2 cut(s)	159, 543
BstH2I	RGCGCY	1 cut(s)	491
BstHHI	GCGC	5 cut(s)	79, 161, 280, 490, 543
BstKTI	GATC	1 cut(s)	504
BstMBI	GATC	1 cut(s)	501
BstMWI	GCNNNNNNNGC	5 cut(s)	85, 125, 286, 326, 487
BstPI	GGTNACC	1 cut(s)	580
BstSCI	CCNGG	5 cut(s)	267, 273, 369, 633, 634
BstSFI	CTRYAG	1 cut(s)	827
BstSLI	GKGCMC	1 cut(s)	823
BstUI	CGCG	2 cut(s)	159, 543
BstV1I	GCAGC	3 cut(s)	313, 523, 895
BstV2I	GAAGAC	3 cut(s)	138, 315, 719
Bsu15I	ATCGAT	1 cut(s)	405
BsuI	GTATCC	1 cut(s)	256
BsuRI	GGCC	2 cut(s)	284, 320
BsuTUI	ATCGAT	1 cut(s)	405
BtsCI	GGATG	2 cut(s)	337, 906
BtsIMutI	CAGTG	1 cut(s)	140
Cac8I	GCNNGC	2 cut(s)	121, 282
CaiI	CAGNNNCTG	1 cut(s)	668
CfoI	GCGC	5 cut(s)	79, 161, 280, 490, 543
Cfr10I	RCCGGY	2 cut(s)	210, 258
Cfr13I	GGNCC	2 cut(s)	271, 373
Cfr9I	CCCGGG	1 cut(s)	634
ClaI	ATCGAT	1 cut(s)	405
CpoI	CGGWCCG	1 cut(s)	271
CseI	GACGC	1 cut(s)	107
Csp6I	GTAC	2 cut(s)	460, 847
CspAI	ACCGGT	1 cut(s)	258
CspI	CGGWCCG	1 cut(s)	271
CviAII	CATG	3 cut(s)	115, 517, 749
CviQI	GTAC	2 cut(s)	460, 847
DdeI	CTNAG	3 cut(s)	383, 484, 594
DpnI	GATC	1 cut(s)	503
DpnII	GATC	1 cut(s)	501
DrdI	GACNNNNNNGTC	1 cut(s)	870
DseDI	GACNNNNNNGTC	1 cut(s)	870
Eco130I	CCWWGG	1 cut(s)	575
Eco24I	GRGCYC	2 cut(s)	269, 483
Eco47I	GGWCC	2 cut(s)	271, 373
Eco88I	CYCGRG	2 cut(s)	634, 868
Eco91I	GGTNACC	1 cut(s)	580
EcoO65I	GGTNACC	1 cut(s)	580
EcoRI	GAATTC	1 cut(s)	752
EcoT14I	CCWWGG	1 cut(s)	575
EcoT38I	GRGCYC	2 cut(s)	269, 483
ErhI	CCWWGG	1 cut(s)	575
FaeI	CATG	3 cut(s)	118, 520, 752
FaiI	YATR	7 cut(s)	61, 63, 116, 518, 645, 750, 940
FalI	AAGNNNNNCTT	2 cut(s)	789, 821
FaqI	GGGAC	1 cut(s)	701
FatI	CATG	3 cut(s)	114, 516, 748
FauI	CCCGC	3 cut(s)	164, 205, 899
FblI	GTMKAC	1 cut(s)	188
Fnu4HI	GCNGC	6 cut(s)	22, 181, 238, 327, 512, 909
FokI	GGATG	2 cut(s)	344, 913
FriOI	GRGCYC	2 cut(s)	269, 483
Fsp4HI	GCNGC	6 cut(s)	22, 181, 238, 327, 512, 909
FspBI	CTAG	1 cut(s)	242
GlaI	GCGC	5 cut(s)	78, 160, 279, 489, 542
GluI	GCNGC	6 cut(s)	22, 181, 238, 327, 512, 909
HaeII	RGCGCY	1 cut(s)	491
HaeIII	GGCC	2 cut(s)	284, 320
HapII	CCGG	6 cut(s)	211, 259, 269, 274, 371, 635
HgaI	GACGC	1 cut(s)	107
HhaI	GCGC	5 cut(s)	79, 161, 280, 490, 543
Hin1II	CATG	3 cut(s)	118, 520, 752
Hin6I	GCGC	5 cut(s)	77, 159, 278, 488, 541
HinP1I	GCGC	5 cut(s)	77, 159, 278, 488, 541
HincII	GTYRAC	1 cut(s)	189
HindII	GTYRAC	1 cut(s)	189
HinfI	GANTC	8 cut(s)	4, 193, 379, 402, 407, 571, 864, 871
HpaII	CCGG	6 cut(s)	211, 259, 269, 274, 371, 635
HphI	GGTGA	2 cut(s)	548, 557
Hpy166II	GTNNAC	4 cut(s)	189, 256, 708, 821
Hpy188I	TCNGA	3 cut(s)	354, 384, 597
Hpy188III	TCNNGA	4 cut(s)	217, 806, 868, 875
Hpy8I	GTNNAC	4 cut(s)	189, 256, 708, 821
Hpy99I	CGWCG	2 cut(s)	193, 419
HpyAV	CCTTC	5 cut(s)	542, 640, 791, 891, 898
HpyCH4III	ACNGT	5 cut(s)	107, 144, 253, 670, 712
HpyCH4V	TGCA	4 cut(s)	511, 683, 766, 821
HpyF10VI	GCNNNNNNNGC	5 cut(s)	85, 125, 286, 326, 487
HpyF3I	CTNAG	3 cut(s)	383, 484, 594
Hsp92II	CATG	3 cut(s)	118, 520, 752
HspAI	GCGC	5 cut(s)	77, 159, 278, 488, 541
Kzo9I	GATC	1 cut(s)	501
LmnI	GCTCC	1 cut(s)	138
Lsp1109I	GCAGC	3 cut(s)	313, 523, 895
LweI	GCATC	1 cut(s)	670
MaeI	CTAG	1 cut(s)	242
MaeIII	GTNAC	2 cut(s)	31, 580
MalI	GATC	1 cut(s)	503
MboI	GATC	1 cut(s)	501
MboII	GAAGA	9 cut(s)	58, 61, 138, 141, 196, 320, 403, 439, 719
MhlI	GDGCHC	3 cut(s)	269, 483, 823
MluCI	AATT	7 cut(s)	338, 357, 421, 430, 558, 752, 932
MlyI	GAGTC	2 cut(s)	858, 880
MroXI	GAANNNNTTC	2 cut(s)	406, 801
MseI	TTAA	2 cut(s)	525, 612
MspA1I	CMGCKG	1 cut(s)	326
MspI	CCGG	6 cut(s)	211, 259, 269, 274, 371, 635
MspR9I	CCNGG	5 cut(s)	269, 275, 371, 635, 636
MvnI	CGCG	2 cut(s)	159, 543
MwoI	GCNNNNNNNGC	5 cut(s)	85, 125, 286, 326, 487
NciI	CCSGG	5 cut(s)	269, 275, 371, 635, 636
NdeII	GATC	1 cut(s)	501
NlaIII	CATG	3 cut(s)	118, 520, 752
NlaIV	GGNNCC	1 cut(s)	375
PcsI	WCGNNNNNNNCGW	1 cut(s)	411
PdmI	GAANNNNTTC	2 cut(s)	406, 801
PfeI	GAWTC	6 cut(s)	4, 193, 379, 402, 407, 571
PinAI	ACCGGT	1 cut(s)	258
PkrI	GCNGC	6 cut(s)	23, 182, 239, 328, 513, 910
PleI	GAGTC	2 cut(s)	858, 879
PpsI	GAGTC	2 cut(s)	858, 879
PspEI	GGTNACC	1 cut(s)	580
PspN4I	GGNNCC	1 cut(s)	375
PspPI	GGNCC	2 cut(s)	271, 373
PstNI	CAGNNNCTG	1 cut(s)	668
RsaI	GTAC	2 cut(s)	461, 848
RsaNI	GTAC	2 cut(s)	460, 847
Rsr2I	CGGWCCG	1 cut(s)	271
RsrII	CGGWCCG	1 cut(s)	271
SalI	GTCGAC	1 cut(s)	187
SaqAI	TTAA	2 cut(s)	525, 612
SatI	GCNGC	6 cut(s)	22, 181, 238, 327, 512, 909
Sau3AI	GATC	1 cut(s)	501
Sau96I	GGNCC	2 cut(s)	271, 373
SchI	GAGTC	2 cut(s)	858, 880
ScrFI	CCNGG	5 cut(s)	269, 275, 371, 635, 636
SduI	GDGCHC	3 cut(s)	269, 483, 823
SetI	ASST	6 cut(s)	175, 516, 707, 719, 727, 828
SfaNI	GCATC	1 cut(s)	670
SfcI	CTRYAG	1 cut(s)	827
SinI	GGWCC	2 cut(s)	271, 373
SmaI	CCCGGG	1 cut(s)	636
SmlI	CTYRAG	1 cut(s)	215
SmoI	CTYRAG	1 cut(s)	215
Sse9I	AATT	7 cut(s)	338, 357, 421, 430, 558, 752, 932
SspMI	CTAG	1 cut(s)	242
StyD4I	CCNGG	5 cut(s)	267, 273, 369, 633, 634
StyI	CCWWGG	1 cut(s)	575
TaaI	ACNGT	5 cut(s)	107, 144, 253, 670, 712
TaqI	TCGA	5 cut(s)	188, 405, 414, 756, 783
TasI	AATT	7 cut(s)	338, 357, 421, 430, 558, 752, 932
TatI	WGTACW	1 cut(s)	459
TauI	GCSGC	3 cut(s)	24, 183, 240
TfiI	GAWTC	6 cut(s)	4, 193, 379, 402, 407, 571
Tru1I	TTAA	2 cut(s)	525, 612
Tru9I	TTAA	2 cut(s)	525, 612
TscAI	CASTG	1 cut(s)	147
TseI	GCWGC	3 cut(s)	326, 511, 908
TspDTI	ATGAA	3 cut(s)	456, 765, 917
TspMI	CCCGGG	1 cut(s)	634
TspRI	CASTG	1 cut(s)	147
VneI	GTGCAC	1 cut(s)	819
VpaK11BI	GGWCC	2 cut(s)	271, 373
XapI	RAATTY	3 cut(s)	338, 430, 752
XmaI	CCCGGG	1 cut(s)	634
XmiI	GTMKAC	1 cut(s)	188
XmnI	GAANNNNTTC	2 cut(s)	406, 801
XspI	CTAG	1 cut(s)	242

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.