Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0006112

Physical Location & Seq

Genomic Coordinates Forward (+)

3607930 .. 3609301

Gene Structure 1372 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGGCGTGGTTTTCAAACAGTCAATTAAGGATAAAATATTCCAACGGTCGAATCGTATTCATTCCAATTTCAGTATACCTCTGTGTGTCGGCTTGTGAACGCAGAGACGAGAGAGAGATGAGGCAGAAGAAAAAGGCAGGATCAGAAATCCCAGAAACCCTAACAGCGATGCCAGAGGAAGAAGAAGAAGGAGATGGTCGATTCTTTGCTTGCTATCTGTTGACCTCTCGCAGCCCTCGCTACAAGGGCCACACTTATATTGGGTTCACAGTGAATCCGAGGCGGCGAATAAGGCAGCACAACGGAGAAATATCGCAAGGAGCCTGGAGAACGAAGCGAAAGCGGCCTTGGGAGATGGTCTTGTGCATCTATGGTTTCCCAACAAACGTTTCTGCTCTCCAGTGCAGTTTGAATGGGCCTGGCAGAATCCAACTGTATCAAAGGCAGTTAGGCAGGCTGCTGCAAGCTTTAAAACCCTTGGAGGACTTGTCAGCAAGATCAAGCTTGCACACACAATGCTCACTCTTCCGCCATGGAACAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000723 GO:0001325 GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004520 GO:0004536 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006139 GO:0006259 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008821 GO:0009893 GO:0009987 GO:0010604 GO:0010638 GO:0016043 GO:0016787 GO:0016788 GO:0016888 GO:0016889 GO:0016893 GO:0016894 GO:0017108 GO:0019219 GO:0019222 GO:0022607 GO:0031323 GO:0031325 GO:0031974 GO:0031981 GO:0032200 GO:0032204 GO:0032206 GO:0032991 GO:0033043 GO:0033044 GO:0033557 GO:0034641 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045935 GO:0046483 GO:0048256 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051052 GO:0051054 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051276 GO:0060249 GO:0060255 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090305 GO:0090656 GO:0090737 GO:0140097 GO:1901360 GO:1904429 GO:1904431 GO:2001252

KEGG Pathways

Metabolic & Signaling

ko03460 map03460

Pfam Domains

Protein Families

GIY-YIG

Protein Analysis

182

Amino Acids

20.93

Weight (kDa)

9.89

Isoelectric Point (pI)

55.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GIY-YIG	PF01541	70 - 133	2.5e-10	GIY-YIG catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006112)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30350 AT2G30350
fragaria_vesca	FvH4_3g40230 FvH4_3g40230
malus_domestica	MD03G1055200.v1.1 MD11G1056400.v1.1
prunus_persica	Prupe.1G103300_v2.0.a1 Prupe.1G103400_v2.0.a1 Prupe.1G106000_v2.0.a1 Prupe.1G108400_v2.0.a1 Prupe.3G073500_v2.0.a1 Prupe.3G073500_v2.0.a1 Prupe.3G073500_v2.0.a1 Prupe.6G043600_v2.0.a1 Prupe.6G045800_v2.0.a1
pyrus_communis	pycom03g04370 pycom11g04670
rosa_chinensis	RchiOBHm_Chr5g0072441
rosa_laevigata	RLG00000036299
rosa_multiflora	Rmu_sc0008676.1_g000007
rosa_roxburghii	Rroxscaffold_1G00008770
rosa_rugosa	Rorug05G0418300
rosa_samantha	Rh5AG474700 Rh5BG494800 Rh5CG518800 Rh5DG506900
rosa_wichuraiana	Rw5G044080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	75
AciI	CCGC	3 cut(s)	283, 343, 529
AclI	AACGTT	1 cut(s)	387
AclWI	GGATC	1 cut(s)	148
AgsI	TTSAA	2 cut(s)	15, 412
AjnI	CCWGG	2 cut(s)	323, 418
AjuI	GAANNNNNNNTTGG	4 cut(s)	331, 363, 373, 405
AluBI	AGCT	3 cut(s)	467, 504, 542
AluI	AGCT	3 cut(s)	467, 504, 542
Alw26I	GTCTC	1 cut(s)	99
AlwI	GGATC	1 cut(s)	148
AoxI	GGCC	3 cut(s)	247, 344, 416
ApeKI	GCWGC	4 cut(s)	231, 295, 457, 460
AspS9I	GGNCC	2 cut(s)	247, 416
BbvI	GCAGC	4 cut(s)	243, 307, 444, 447
BccI	CCATC	2 cut(s)	188, 349
BciT130I	CCWGG	2 cut(s)	325, 420
BcoDI	GTCTC	1 cut(s)	99
BisI	GCNGC	6 cut(s)	232, 284, 296, 344, 458, 461
BlsI	GCNGC	6 cut(s)	233, 285, 297, 345, 459, 462
Bme1390I	CCNGG	2 cut(s)	325, 420
BmgT120I	GGNCC	2 cut(s)	247, 416
BmiI	GGNNCC	1 cut(s)	322
BmrFI	CCNGG	2 cut(s)	325, 420
BmsI	GCATC	2 cut(s)	159, 375
BpmI	CTGGAG	2 cut(s)	346, 383
BsaJI	CCNNGG	4 cut(s)	278, 347, 477, 532
BsaXI	ACNNNNNCTCC	2 cut(s)	473, 503
Bse1I	ACTGG	1 cut(s)	400
BseBI	CCWGG	2 cut(s)	325, 420
BseDI	CCNNGG	4 cut(s)	278, 347, 477, 532
BseNI	ACTGG	1 cut(s)	400
BseXI	GCAGC	4 cut(s)	243, 307, 444, 447
BsgI	GTGCAG	1 cut(s)	424
Bsh1285I	CGRYCG	1 cut(s)	49
BshFI	GGCC	3 cut(s)	249, 346, 418
BsiEI	CGRYCG	1 cut(s)	49
BsmAI	GTCTC	1 cut(s)	99
BsmBI	CGTCTC	1 cut(s)	99
BsnI	GGCC	3 cut(s)	249, 346, 418
Bsp143I	GATC	2 cut(s)	140, 497
Bsp19I	CCATGG	1 cut(s)	532
BspACI	CCGC	3 cut(s)	283, 343, 529
BspANI	GGCC	3 cut(s)	249, 346, 418
BspLI	GGNNCC	1 cut(s)	322
BspPI	GGATC	1 cut(s)	148
BsrI	ACTGG	1 cut(s)	400
BssECI	CCNNGG	4 cut(s)	278, 347, 477, 532
BssMI	GATC	2 cut(s)	140, 497
BssNAI	GTATAC	1 cut(s)	76
BssT1I	CCWWGG	3 cut(s)	347, 477, 532
Bst1107I	GTATAC	1 cut(s)	76
Bst2UI	CCWGG	2 cut(s)	325, 420
Bst4CI	ACNGT	4 cut(s)	20, 47, 271, 435
Bst6I	CTCTTC	1 cut(s)	530
BstC8I	GCNNGC	4 cut(s)	211, 455, 465, 506
BstDSI	CCRYGG	1 cut(s)	532
BstKTI	GATC	2 cut(s)	143, 500
BstMAI	GTCTC	1 cut(s)	99
BstMBI	GATC	2 cut(s)	140, 497
BstMCI	CGRYCG	1 cut(s)	49
BstMWI	GCNNNNNNNGC	4 cut(s)	237, 246, 292, 343
BstNI	CCWGG	2 cut(s)	325, 420
BstSCI	CCNGG	2 cut(s)	323, 418
BstV1I	GCAGC	4 cut(s)	243, 307, 444, 447
BstZ17I	GTATAC	1 cut(s)	76
BsuRI	GGCC	3 cut(s)	249, 346, 418
BtgI	CCRYGG	1 cut(s)	532
BtgZI	GCGATG	1 cut(s)	182
BtsIMutI	CAGTG	2 cut(s)	276, 407
Cac8I	GCNNGC	4 cut(s)	211, 455, 465, 506
Cfr13I	GGNCC	2 cut(s)	247, 416
CviAII	CATG	1 cut(s)	533
DpnI	GATC	2 cut(s)	142, 499
DpnII	GATC	2 cut(s)	140, 497
DraI	TTTAAA	1 cut(s)	471
Eam1104I	CTCTTC	1 cut(s)	530
EarI	CTCTTC	1 cut(s)	530
EciI	GGCGGA	1 cut(s)	518
Eco130I	CCWWGG	3 cut(s)	347, 477, 532
EcoRII	CCWGG	2 cut(s)	323, 418
EcoT14I	CCWWGG	3 cut(s)	347, 477, 532
ErhI	CCWWGG	3 cut(s)	347, 477, 532
Esp3I	CGTCTC	1 cut(s)	99
FaeI	CATG	1 cut(s)	536
FaiI	YATR	4 cut(s)	76, 258, 372, 534
FatI	CATG	1 cut(s)	532
FblI	GTMKAC	1 cut(s)	75
Fnu4HI	GCNGC	6 cut(s)	232, 284, 296, 344, 458, 461
Fsp4HI	GCNGC	6 cut(s)	232, 284, 296, 344, 458, 461
GluI	GCNGC	6 cut(s)	232, 284, 296, 344, 458, 461
GsuI	CTGGAG	2 cut(s)	346, 383
HaeIII	GGCC	3 cut(s)	249, 346, 418
Hin1II	CATG	1 cut(s)	536
HincII	GTYRAC	1 cut(s)	222
HindII	GTYRAC	1 cut(s)	222
HindIII	AAGCTT	2 cut(s)	465, 502
HinfI	GANTC	4 cut(s)	51, 201, 274, 426
Hpy166II	GTNNAC	4 cut(s)	76, 98, 222, 267
Hpy188I	TCNGA	2 cut(s)	145, 279
Hpy8I	GTNNAC	4 cut(s)	76, 98, 222, 267
HpyAV	CCTTC	1 cut(s)	182
HpyCH4III	ACNGT	4 cut(s)	20, 47, 271, 435
HpyCH4IV	ACGT	1 cut(s)	387
HpyCH4V	TGCA	4 cut(s)	366, 405, 463, 508
HpyF10VI	GCNNNNNNNGC	4 cut(s)	237, 246, 292, 343
HpySE526I	ACGT	1 cut(s)	387
Hsp92II	CATG	1 cut(s)	536
Kzo9I	GATC	2 cut(s)	140, 497
LmnI	GCTCC	1 cut(s)	320
LpnPI	CCDG	9 cut(s)	123, 165, 186, 310, 337, 405, 413, 432, 439
Lsp1109I	GCAGC	4 cut(s)	243, 307, 444, 447
LweI	GCATC	2 cut(s)	159, 375
MaeII	ACGT	1 cut(s)	387
MalI	GATC	2 cut(s)	142, 499
MboI	GATC	2 cut(s)	140, 497
MboII	GAAGA	5 cut(s)	139, 191, 194, 197, 517
MluCI	AATT	2 cut(s)	23, 66
MmeI	TCCRAC	2 cut(s)	66, 454
MnlI	CCTC	7 cut(s)	89, 114, 169, 235, 246, 273, 475
MseI	TTAA	2 cut(s)	26, 470
MspR9I	CCNGG	2 cut(s)	325, 420
MvaI	CCWGG	2 cut(s)	325, 420
MwoI	GCNNNNNNNGC	4 cut(s)	237, 246, 292, 343
NcoI	CCATGG	1 cut(s)	532
NdeII	GATC	2 cut(s)	140, 497
NlaIII	CATG	1 cut(s)	536
NlaIV	GGNNCC	1 cut(s)	322
PcsI	WCGNNNNNNNCGW	1 cut(s)	51
PfeI	GAWTC	4 cut(s)	51, 201, 274, 426
PkrI	GCNGC	6 cut(s)	233, 285, 297, 345, 459, 462
Psp1406I	AACGTT	1 cut(s)	387
Psp6I	CCWGG	2 cut(s)	323, 418
PspGI	CCWGG	2 cut(s)	323, 418
PspN4I	GGNNCC	1 cut(s)	322
PspPI	GGNCC	2 cut(s)	247, 416
SaqAI	TTAA	2 cut(s)	26, 470
SatI	GCNGC	6 cut(s)	232, 284, 296, 344, 458, 461
Sau3AI	GATC	2 cut(s)	140, 497
Sau96I	GGNCC	2 cut(s)	247, 416
ScrFI	CCNGG	2 cut(s)	325, 420
SetI	ASST	6 cut(s)	81, 227, 390, 469, 506, 544
SfaNI	GCATC	2 cut(s)	159, 375
Sse9I	AATT	2 cut(s)	23, 66
SsiI	CCGC	3 cut(s)	283, 343, 529
SspI	AATATT	1 cut(s)	38
StyD4I	CCNGG	2 cut(s)	323, 418
StyI	CCWWGG	3 cut(s)	347, 477, 532
TaaI	ACNGT	4 cut(s)	20, 47, 271, 435
TaiI	ACGT	1 cut(s)	390
TaqI	TCGA	2 cut(s)	49, 199
TasI	AATT	2 cut(s)	23, 66
TauI	GCSGC	2 cut(s)	286, 346
TfiI	GAWTC	4 cut(s)	51, 201, 274, 426
Tru1I	TTAA	2 cut(s)	26, 470
Tru9I	TTAA	2 cut(s)	26, 470
TscAI	CASTG	2 cut(s)	276, 407
TseI	GCWGC	4 cut(s)	231, 295, 457, 460
TspDTI	ATGAA	1 cut(s)	49
TspGWI	ACGGA	1 cut(s)	318
TspRI	CASTG	2 cut(s)	276, 407
XcmI	CCANNNNNNNNNTGG	1 cut(s)	257
XmiI	GTMKAC	1 cut(s)	75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.