pycom11g05660

SAGA-associated factor 11

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0007301
Physical Location & Seq
Forward (+)
4315770 .. 4316124
355 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 249 bp
ATGAATTGTGGTCGGTCTATCGTGGCTGGGAGGTTTGCTCCTCATCTGGAGAAGTGTATGGGAAAGGGTAGAAGGGCTCGCCTTAAGGTGACAAGAATTAGCACTGCTGCACAAACTCGGAATTCTCTAGGAAACCCTGCTTCCACATACTCTACATATTCATGTTCCAACAGCACAAGCCGGTTATCAAATGAAGCATCGGGTGTTGCTGGTGAGGAGTACTCGAACAGTGCATTGGAAGAGCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sgf11

Protein Analysis

83

Amino Acids

8.74

Weight (kDa)

9.57

Isoelectric Point (pI)

40.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sgf11 PF08209 2 - 26 5.9e-14 Sgf11 (transcriptional regulation protein)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 121
AfaI GTAC 1 cut(s) 221
AflII CTTAAG 1 cut(s) 83
AjuI GAANNNNNNNTTGG 1 cut(s) 218
ApeKI GCWGC 1 cut(s) 107
ApoI RAATTY 1 cut(s) 121
AsuHPI GGTGA 2 cut(s) 100, 224
BanII GRGCYC 1 cut(s) 79
BbvI GCAGC 1 cut(s) 94
BfaI CTAG 1 cut(s) 128
BfrI CTTAAG 1 cut(s) 83
BisI GCNGC 1 cut(s) 108
BlsI GCNGC 1 cut(s) 109
BmcAI AGTACT 1 cut(s) 221
BmsI GCATC 1 cut(s) 206
BplI GAGNNNNNCTC 4 cut(s) 22, 54, 206, 238
BpmI CTGGAG 1 cut(s) 68
Bse118I RCCGGY 1 cut(s) 180
BseRI GAGGAG 2 cut(s) 30, 230
BseXI GCAGC 1 cut(s) 94
BseYI CCCAGC 1 cut(s) 26
BsgI GTGCAG 1 cut(s) 93
BsiSI CCGG 1 cut(s) 181
Bsp1286I GDGCHC 1 cut(s) 79
BspQI GCTCTTC 1 cut(s) 234
BspTI CTTAAG 1 cut(s) 83
BsrFI RCCGGY 1 cut(s) 180
BssAI RCCGGY 1 cut(s) 180
Bst4CI ACNGT 1 cut(s) 230
Bst6I CTCTTC 1 cut(s) 234
BstAFI CTTAAG 1 cut(s) 83
BstC8I GCNNGC 1 cut(s) 79
BstV1I GCAGC 1 cut(s) 94
BtsI GCAGTG 1 cut(s) 102
BtsIMutI CAGTG 2 cut(s) 102, 235
Cac8I GCNNGC 1 cut(s) 79
Cfr10I RCCGGY 1 cut(s) 180
Csp6I GTAC 1 cut(s) 220
CviAII CATG 2 cut(s) 162, 246
CviJI RGCY 4 cut(s) 26, 77, 180, 244
CviKI_1 RGCY 4 cut(s) 26, 77, 180, 244
CviQI GTAC 1 cut(s) 220
Eam1104I CTCTTC 1 cut(s) 234
EarI CTCTTC 1 cut(s) 234
Eco24I GRGCYC 1 cut(s) 79
EcoRI GAATTC 1 cut(s) 121
EcoT38I GRGCYC 1 cut(s) 79
FaeI CATG 2 cut(s) 165, 249
FaiI YATR 5 cut(s) 59, 148, 157, 163, 247
FatI CATG 2 cut(s) 161, 245
Fnu4HI GCNGC 1 cut(s) 108
FriOI GRGCYC 1 cut(s) 79
Fsp4HI GCNGC 1 cut(s) 108
FspBI CTAG 1 cut(s) 128
GluI GCNGC 1 cut(s) 108
GsaI CCCAGC 1 cut(s) 30
GsuI CTGGAG 1 cut(s) 68
HapII CCGG 1 cut(s) 181
Hin1II CATG 2 cut(s) 165, 249
HpaII CCGG 1 cut(s) 181
HphI GGTGA 2 cut(s) 100, 224
Hpy188I TCNGA 1 cut(s) 120
Hpy188III TCNNGA 1 cut(s) 47
HpyAV CCTTC 1 cut(s) 66
HpyCH4III ACNGT 1 cut(s) 230
HpyCH4V TGCA 2 cut(s) 110, 233
Hsp92II CATG 2 cut(s) 165, 249
LguI GCTCTTC 1 cut(s) 234
LmnI GCTCC 1 cut(s) 43
LpnPI CCDG 5 cut(s) 12, 32, 150, 194, 195
Lsp1109I GCAGC 1 cut(s) 94
LweI GCATC 1 cut(s) 206
MaeI CTAG 1 cut(s) 128
MaeIII GTNAC 1 cut(s) 88
MhlI GDGCHC 1 cut(s) 79
MluCI AATT 3 cut(s) 4, 96, 121
MmeI TCCRAC 1 cut(s) 192
MnlI CCTC 3 cut(s) 24, 51, 208
MseI TTAA 1 cut(s) 84
MslI CAYNNNNRTG 1 cut(s) 160
MspCI CTTAAG 1 cut(s) 83
MspI CCGG 1 cut(s) 181
NlaIII CATG 2 cut(s) 165, 249
NmuCI GTSAC 1 cut(s) 88
PciSI GCTCTTC 1 cut(s) 234
PkrI GCNGC 1 cut(s) 109
PspFI CCCAGC 1 cut(s) 26
RsaI GTAC 1 cut(s) 221
RsaNI GTAC 1 cut(s) 220
RseI CAYNNNNRTG 1 cut(s) 160
SapI GCTCTTC 1 cut(s) 234
SaqAI TTAA 1 cut(s) 84
SatI GCNGC 1 cut(s) 108
ScaI AGTACT 1 cut(s) 221
SduI GDGCHC 1 cut(s) 79
SetI ASST 2 cut(s) 35, 90
SfaNI GCATC 1 cut(s) 206
SmiMI CAYNNNNRTG 1 cut(s) 160
SmlI CTYRAG 1 cut(s) 83
SmoI CTYRAG 1 cut(s) 83
Sse9I AATT 3 cut(s) 4, 96, 121
SspMI CTAG 1 cut(s) 128
TaaI ACNGT 1 cut(s) 230
TaqI TCGA 1 cut(s) 224
TasI AATT 3 cut(s) 4, 96, 121
TatI WGTACW 1 cut(s) 219
Tru1I TTAA 1 cut(s) 84
Tru9I TTAA 1 cut(s) 84
TscAI CASTG 2 cut(s) 109, 235
TseFI GTSAC 1 cut(s) 88
TseI GCWGC 1 cut(s) 107
Tsp45I GTSAC 1 cut(s) 88
TspDTI ATGAA 3 cut(s) 17, 150, 207
TspRI CASTG 2 cut(s) 109, 235
Vha464I CTTAAG 1 cut(s) 83
XapI RAATTY 1 cut(s) 121
XspI CTAG 1 cut(s) 128
ZrmI AGTACT 1 cut(s) 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.