pycom11g06020

Omega-3 fatty acid desaturase, endoplasmic

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
Physical Location & Seq
Forward (+)
4648764 .. 4651077
2314 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1125 bp
ATGGTGGAAACTCAGCCTCAGAAGCAGCAGAGCAAGCCCATCAATGGCGTCAATGGGATCCATAACCACCACCATGACGAAGCAGATTTCGACCCAAGTGCCCCTCCTCCATTCAAGATAGCTGCTTACAAATCGATCCGAGCTGCCATTCCCAAACACTGCTGGGTCAAGAATCCATGGAGGTCTCTTAGCTATGTTTTTAGGGATTTGTTTGCCATTTCTGCCATGGCAGCTGCTGCCATTTACTTGGATAGTTGGTATCTTTGGCCTTTGTACTGGGCTGCTCAGGGAACCATGTTCTGGGCTCTCTTTGTTCTTGGACATGATTGTGGCCATGGAAGCTTTTCAGACAGTAGAATTCTGAACACAGTTGTGGGGCATATATTGCATTCTGCAATTCTTGTACCATATAATGGATGGAGAATTAGCCACCGAACTCACCATCAGAACCATGGACATGTTGAGAATGATGAGTCATGGGTTCCTCTGACTGAGAAGCTTTATTCGAGTCTCGATGAAAGTACCCGAAAATTCAGATTCAGGGTGCCTTACCCCATTTTTGCATACCCTTTCTATCTGTGGACTAGAAGTCCAGGGAAGAAAGGTTCTCATTTCAATCCGTACAGTGACTTGTTTGCCCCAAATGAAAGGAGAGATGTGATAGCATCAACTACTTGCTGGACTATGATGGTTTCCCTGCTTGTCTATCTATCGTTTGTCGTAGGCCCTGTCGAAATTCTCAAGCTTTATGGTGTCCCTTACTGGATTTTCGTAATGTGGTTGGACATGGTCACATATTTGCATCACCATGGTTATGACGAAAAACTTCCTTGGTACCGCGGAAAGGAATGGAGTTATCTACGAGGAGGCCTCACAACTGTAGATCGCGATTATGGAATGTTCAACAACATCCACCATGACATTGGCACTCATACAAAGGCAGCAAAACCAGTTCTGGGGAAGTACTACCGGGACCCGAAGAAATCTGGGCCATTTCCGGTTCACTTGATCGATAACCTGTTGTCAAGCATGAGCAATGATCACTATGTTAGTGACACTGGAGACATAGTATTCTACCAGACAGACCCCAAGCTTTTCAAAAGTCTCAAAGGCAAGTCCAATTGA

Protein Analysis

375

Amino Acids

43.27

Weight (kDa)

8.94

Isoelectric Point (pI)

31.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3474 PF11960 12 - 78 1.6e-23 Domain of unknown function (DUF3474)
FA_desaturase PF00487 86 - 311 6e-21 Fatty acid desaturase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 834
AccB1I GGYRCC 2 cut(s) 544, 834
AccB7I CCANNNNNTGG 2 cut(s) 300, 413
AccII CGCG 2 cut(s) 840, 888
AciI CCGC 2 cut(s) 838, 840
AclWI GGATC 3 cut(s) 52, 65, 130
AcoI YGGCCR 1 cut(s) 331
AcsI RAATTY 3 cut(s) 357, 530, 735
AcyI GRCGYC 1 cut(s) 48
AfaI GTAC 6 cut(s) 275, 405, 523, 623, 836, 965
AfiI CCNNNNNNNGG 5 cut(s) 44, 300, 413, 844, 956
AflIII ACRYGT 1 cut(s) 457
AgsI TTSAA 4 cut(s) 115, 616, 904, 1099
AhdI GACNNNNNGTC 1 cut(s) 588
AjnI CCWGG 1 cut(s) 592
AleI CACNNNNGTG 1 cut(s) 371
AloI GAACNNNNNNTCC 2 cut(s) 589, 621
AluBI AGCT 8 cut(s) 122, 143, 192, 233, 342, 499, 745, 1093
AluI AGCT 8 cut(s) 122, 143, 192, 233, 342, 499, 745, 1093
Alw26I GTCTC 4 cut(s) 189, 515, 1056, 1109
AlwI GGATC 3 cut(s) 52, 65, 130
AlwNI CAGNNNCTG 1 cut(s) 236
AoxI GGCC 5 cut(s) 266, 331, 724, 868, 989
ApeKI GCWGC 8 cut(s) 25, 122, 143, 230, 233, 236, 281, 941
ApoI RAATTY 3 cut(s) 357, 530, 735
Asp700I GAANNNNTTC 2 cut(s) 343, 825
Asp718I GGTACC 1 cut(s) 834
AspS9I GGNCC 3 cut(s) 725, 973, 989
AsuC2I CCSGG 1 cut(s) 971
AsuHPI GGTGA 2 cut(s) 431, 797
AvaII GGWCC 1 cut(s) 973
BaeGI GKGCMC 1 cut(s) 103
BalI TGGCCA 1 cut(s) 333
BamHI GGATCC 1 cut(s) 57
BanI GGYRCC 2 cut(s) 544, 834
BanII GRGCYC 1 cut(s) 307
BbvI GCAGC 8 cut(s) 37, 109, 130, 220, 223, 242, 268, 953
BccI CCATC 4 cut(s) 47, 411, 450, 682
BcgI CGANNNNNNTGC 2 cut(s) 80, 114
BciT130I CCWGG 1 cut(s) 594
BclI TGATCA 1 cut(s) 1039
BcnI CCSGG 1 cut(s) 971
BcoDI GTCTC 4 cut(s) 189, 515, 1056, 1109
BfaI CTAG 1 cut(s) 585
BfmI CTRYAG 1 cut(s) 879
BisI GCNGC 8 cut(s) 26, 123, 144, 231, 234, 237, 282, 942
BlsI GCNGC 8 cut(s) 27, 124, 145, 232, 235, 238, 283, 943
BmcAI AGTACT 1 cut(s) 965
Bme1390I CCNGG 2 cut(s) 594, 971
Bme18I GGWCC 1 cut(s) 973
BmeRI GACNNNNNGTC 1 cut(s) 588
BmgT120I GGNCC 3 cut(s) 725, 973, 989
BmiI GGNNCC 7 cut(s) 59, 292, 483, 546, 836, 974, 975
BmrFI CCNGG 2 cut(s) 594, 971
BmrI ACTGGG 1 cut(s) 286
BmsI GCATC 2 cut(s) 674, 811
BmuI ACTGGG 1 cut(s) 286
BplI GAGNNNNNCTC 2 cut(s) 855, 887
BpmI CTGGAG 1 cut(s) 1080
Bpu10I CCTNAGC 1 cut(s) 285
BpuEI CTTGAG 1 cut(s) 725
BpuMI CCSGG 1 cut(s) 971
Bsa29I ATCGAT 2 cut(s) 134, 1011
BsaHI GRCGYC 1 cut(s) 48
BsaI GGTCTC 1 cut(s) 189
BsaJI CCNNGG 8 cut(s) 176, 225, 334, 451, 593, 808, 830, 838
BsaWI WCCGGW 1 cut(s) 997
BsaXI ACNNNNNCTCC 2 cut(s) 1053, 1083
Bsc4I CCNNNNNNNGG 5 cut(s) 44, 300, 413, 844, 956
Bse1I ACTGG 4 cut(s) 281, 767, 950, 1063
Bse3DI GCAATG 1 cut(s) 1042
BseBI CCWGG 1 cut(s) 594
BseCI ATCGAT 2 cut(s) 134, 1011
BseDI CCNNGG 8 cut(s) 176, 225, 334, 451, 593, 808, 830, 838
BseGI GGATG 2 cut(s) 422, 909
BseLI CCNNNNNNNGG 5 cut(s) 44, 300, 413, 844, 956
BseMI GCAATG 1 cut(s) 1042
BseMII CTCAG 4 cut(s) 26, 32, 299, 483
BseNI ACTGG 4 cut(s) 281, 767, 950, 1063
BseRI GAGGAG 2 cut(s) 96, 879
BseSI GKGCMC 1 cut(s) 103
BseXI GCAGC 8 cut(s) 37, 109, 130, 220, 223, 242, 268, 953
BseYI CCCAGC 1 cut(s) 162
Bsh1236I CGCG 2 cut(s) 840, 888
BshFI GGCC 5 cut(s) 268, 333, 726, 870, 991
BshNI GGYRCC 2 cut(s) 544, 834
BshVI ATCGAT 2 cut(s) 134, 1011
BsiSI CCGG 2 cut(s) 970, 998
BslFI GGGAC 2 cut(s) 740, 986
BslI CCNNNNNNNGG 5 cut(s) 44, 300, 413, 844, 956
BsmAI GTCTC 4 cut(s) 189, 515, 1056, 1109
BsmFI GGGAC 2 cut(s) 740, 986
BsmI GAATGC 1 cut(s) 388
BsnI GGCC 5 cut(s) 268, 333, 726, 870, 991
Bso31I GGTCTC 1 cut(s) 189
Bsp1286I GDGCHC 2 cut(s) 103, 307
Bsp143I GATC 5 cut(s) 57, 135, 883, 1008, 1039
Bsp19I CCATGG 5 cut(s) 176, 225, 334, 451, 808
Bsp68I TCGCGA 1 cut(s) 888
BspACI CCGC 2 cut(s) 838, 840
BspANI GGCC 5 cut(s) 268, 333, 726, 870, 991
BspCNI CTCAG 4 cut(s) 25, 31, 298, 484
BspDI ATCGAT 2 cut(s) 134, 1011
BspFNI CGCG 2 cut(s) 840, 888
BspLI GGNNCC 7 cut(s) 59, 292, 483, 546, 836, 974, 975
BspPI GGATC 3 cut(s) 52, 65, 130
BspT107I GGYRCC 2 cut(s) 544, 834
BspTNI GGTCTC 1 cut(s) 189
BsrDI GCAATG 1 cut(s) 1042
BsrI ACTGG 4 cut(s) 281, 767, 950, 1063
BssECI CCNNGG 8 cut(s) 176, 225, 334, 451, 593, 808, 830, 838
BssMI GATC 5 cut(s) 57, 135, 883, 1008, 1039
BssNI GRCGYC 1 cut(s) 48
BssT1I CCWWGG 6 cut(s) 176, 225, 334, 451, 808, 830
Bst2UI CCWGG 1 cut(s) 594
Bst4CI ACNGT 4 cut(s) 353, 370, 626, 880
BstACI GRCGYC 1 cut(s) 48
BstAPI GCANNNNNTGC 2 cut(s) 236, 385
BstC8I GCNNGC 1 cut(s) 35
BstDEI CTNAG 5 cut(s) 12, 18, 188, 285, 492
BstDSI CCRYGG 6 cut(s) 176, 225, 334, 451, 808, 838
BstF5I GGATG 2 cut(s) 422, 909
BstFNI CGCG 2 cut(s) 840, 888
BstKTI GATC 5 cut(s) 60, 138, 886, 1011, 1042
BstMAI GTCTC 4 cut(s) 189, 515, 1056, 1109
BstMBI GATC 5 cut(s) 57, 135, 883, 1008, 1039
BstMWI GCNNNNNNNGC 7 cut(s) 22, 34, 221, 230, 236, 339, 385
BstNI CCWGG 1 cut(s) 594
BstNSI RCATGY 1 cut(s) 461
BstSCI CCNGG 2 cut(s) 592, 969
BstSFI CTRYAG 1 cut(s) 879
BstSLI GKGCMC 1 cut(s) 103
BstUI CGCG 2 cut(s) 840, 888
BstV1I GCAGC 8 cut(s) 37, 109, 130, 220, 223, 242, 268, 953
BstX2I RGATCY 1 cut(s) 57
BstXI CCANNNNNNTGG 2 cut(s) 247, 923
BstYI RGATCY 1 cut(s) 57
Bsu15I ATCGAT 2 cut(s) 134, 1011
BsuRI GGCC 5 cut(s) 268, 333, 726, 870, 991
BsuTUI ATCGAT 2 cut(s) 134, 1011
BtgI CCRYGG 6 cut(s) 176, 225, 334, 451, 808, 838
BtsCI GGATG 2 cut(s) 422, 909
BtsI GCAGTG 1 cut(s) 157
BtsIMutI CAGTG 3 cut(s) 157, 631, 1056
BtuMI TCGCGA 1 cut(s) 888
Cac8I GCNNGC 1 cut(s) 35
CaiI CAGNNNCTG 1 cut(s) 236
Cfr13I GGNCC 3 cut(s) 725, 973, 989
Cfr42I CCGCGG 1 cut(s) 841
ClaI ATCGAT 2 cut(s) 134, 1011
CseI GACGC 1 cut(s) 37
Csp6I GTAC 6 cut(s) 274, 404, 522, 622, 835, 964
CviQI GTAC 6 cut(s) 274, 404, 522, 622, 835, 964
DdeI CTNAG 5 cut(s) 12, 18, 188, 285, 492
DpnI GATC 5 cut(s) 59, 137, 885, 1010, 1041
DpnII GATC 5 cut(s) 57, 135, 883, 1008, 1039
DriI GACNNNNNGTC 1 cut(s) 588
EaeI YGGCCR 1 cut(s) 331
Eam1105I GACNNNNNGTC 1 cut(s) 588
Eco130I CCWWGG 6 cut(s) 176, 225, 334, 451, 808, 830
Eco147I AGGCCT 1 cut(s) 870
Eco24I GRGCYC 1 cut(s) 307
Eco31I GGTCTC 1 cut(s) 189
Eco47I GGWCC 1 cut(s) 973
EcoO109I RGGNCCY 2 cut(s) 725, 973
EcoRI GAATTC 1 cut(s) 357
EcoRII CCWGG 1 cut(s) 592
EcoT14I CCWWGG 6 cut(s) 176, 225, 334, 451, 808, 830
EcoT38I GRGCYC 1 cut(s) 307
ErhI CCWWGG 6 cut(s) 176, 225, 334, 451, 808, 830
FaqI GGGAC 2 cut(s) 740, 986
FbaI TGATCA 1 cut(s) 1039
Fnu4HI GCNGC 8 cut(s) 26, 123, 144, 231, 234, 237, 282, 942
FokI GGATG 2 cut(s) 429, 896
FriOI GRGCYC 1 cut(s) 307
Fsp4HI GCNGC 8 cut(s) 26, 123, 144, 231, 234, 237, 282, 942
FspBI CTAG 1 cut(s) 585
GluI GCNGC 8 cut(s) 26, 123, 144, 231, 234, 237, 282, 942
GsaI CCCAGC 1 cut(s) 166
GsuI CTGGAG 1 cut(s) 1080
HaeIII GGCC 5 cut(s) 268, 333, 726, 870, 991
HapII CCGG 2 cut(s) 970, 998
HgaI GACGC 1 cut(s) 37
Hin1I GRCGYC 1 cut(s) 48
HindIII AAGCTT 4 cut(s) 340, 497, 743, 1091
HinfI GANTC 4 cut(s) 172, 473, 508, 537
HpaII CCGG 2 cut(s) 970, 998
HphI GGTGA 2 cut(s) 431, 797
Hpy166II GTNNAC 2 cut(s) 582, 1003
Hpy188I TCNGA 7 cut(s) 21, 140, 349, 363, 447, 489, 536
Hpy188III TCNNGA 4 cut(s) 115, 169, 512, 887
Hpy8I GTNNAC 2 cut(s) 582, 1003
HpyCH4III ACNGT 4 cut(s) 353, 370, 626, 880
HpyCH4V TGCA 4 cut(s) 388, 395, 563, 802
HpyF10VI GCNNNNNNNGC 7 cut(s) 22, 34, 221, 230, 236, 339, 385
HpyF3I CTNAG 5 cut(s) 12, 18, 188, 285, 492
Hsp92I GRCGYC 1 cut(s) 48
KflI GGGWCCC 1 cut(s) 973
KpnI GGTACC 1 cut(s) 838
Ksp22I TGATCA 1 cut(s) 1039
KspI CCGCGG 1 cut(s) 841
Kzo9I GATC 5 cut(s) 57, 135, 883, 1008, 1039
Lsp1109I GCAGC 8 cut(s) 37, 109, 130, 220, 223, 242, 268, 953
LweI GCATC 2 cut(s) 674, 811
MaeI CTAG 1 cut(s) 585
MaeIII GTNAC 3 cut(s) 626, 790, 1052
MalI GATC 5 cut(s) 59, 137, 885, 1010, 1041
MboI GATC 5 cut(s) 57, 135, 883, 1008, 1039
MboII GAAGA 2 cut(s) 610, 991
MfeI CAATTG 1 cut(s) 1120
MflI RGATCY 1 cut(s) 57
MhlI GDGCHC 2 cut(s) 103, 307
MlsI TGGCCA 1 cut(s) 333
MluCI AATT 6 cut(s) 357, 396, 423, 530, 735, 1120
MluNI TGGCCA 1 cut(s) 333
MlyI GAGTC 2 cut(s) 482, 517
MmeI TCCRAC 1 cut(s) 762
MnlI CCTC 8 cut(s) 27, 114, 117, 174, 495, 857, 860, 881
Mox20I TGGCCA 1 cut(s) 333
MroXI GAANNNNTTC 2 cut(s) 343, 825
MscI TGGCCA 1 cut(s) 333
MslI CAYNNNNRTG 6 cut(s) 72, 327, 371, 456, 807, 813
Msp20I TGGCCA 1 cut(s) 333
MspA1I CMGCKG 2 cut(s) 233, 840
MspI CCGG 2 cut(s) 970, 998
MspR9I CCNGG 2 cut(s) 594, 971
MunI CAATTG 1 cut(s) 1120
Mva1269I GAATGC 1 cut(s) 388
MvaI CCWGG 1 cut(s) 594
MvnI CGCG 2 cut(s) 840, 888
MwoI GCNNNNNNNGC 7 cut(s) 22, 34, 221, 230, 236, 339, 385
NciI CCSGG 1 cut(s) 971
NcoI CCATGG 5 cut(s) 176, 225, 334, 451, 808
NdeII GATC 5 cut(s) 57, 135, 883, 1008, 1039
NlaIV GGNNCC 7 cut(s) 59, 292, 483, 546, 836, 974, 975
NmuCI GTSAC 3 cut(s) 626, 790, 1052
NruI TCGCGA 1 cut(s) 888
NspI RCATGY 1 cut(s) 461
OliI CACNNNNGTG 1 cut(s) 371
PceI AGGCCT 1 cut(s) 870
PciI ACATGT 1 cut(s) 457
PctI GAATGC 1 cut(s) 388
PdmI GAANNNNTTC 2 cut(s) 343, 825
PfeI GAWTC 2 cut(s) 172, 537
PflFI GACNNNGTC 1 cut(s) 788
PflMI CCANNNNNTGG 2 cut(s) 300, 413
PkrI GCNGC 8 cut(s) 27, 124, 145, 232, 235, 238, 283, 943
PleI GAGTC 2 cut(s) 481, 516
PpsI GAGTC 2 cut(s) 481, 516
PpuMI RGGWCCY 1 cut(s) 973
PscI ACATGT 1 cut(s) 457
Psp5II RGGWCCY 1 cut(s) 973
Psp6I CCWGG 1 cut(s) 592
PspFI CCCAGC 1 cut(s) 162
PspGI CCWGG 1 cut(s) 592
PspN4I GGNNCC 7 cut(s) 59, 292, 483, 546, 836, 974, 975
PspPI GGNCC 3 cut(s) 725, 973, 989
PspPPI RGGWCCY 1 cut(s) 973
PstNI CAGNNNCTG 1 cut(s) 236
PsuI RGATCY 1 cut(s) 57
PsyI GACNNNGTC 1 cut(s) 788
PvuII CAGCTG 1 cut(s) 233
RruI TCGCGA 1 cut(s) 888
RsaI GTAC 6 cut(s) 275, 405, 523, 623, 836, 965
RsaNI GTAC 6 cut(s) 274, 404, 522, 622, 835, 964
RseI CAYNNNNRTG 6 cut(s) 72, 327, 371, 456, 807, 813
SacII CCGCGG 1 cut(s) 841
SatI GCNGC 8 cut(s) 26, 123, 144, 231, 234, 237, 282, 942
Sau3AI GATC 5 cut(s) 57, 135, 883, 1008, 1039
Sau96I GGNCC 3 cut(s) 725, 973, 989
ScaI AGTACT 1 cut(s) 965
SchI GAGTC 2 cut(s) 482, 517
ScrFI CCNGG 2 cut(s) 594, 971
SduI GDGCHC 2 cut(s) 103, 307
SfaNI GCATC 2 cut(s) 674, 811
SfcI CTRYAG 1 cut(s) 879
Sfr303I CCGCGG 1 cut(s) 841
SgrBI CCGCGG 1 cut(s) 841
SinI GGWCC 1 cut(s) 973
SmiMI CAYNNNNRTG 6 cut(s) 72, 327, 371, 456, 807, 813
SmlI CTYRAG 1 cut(s) 740
SmoI CTYRAG 1 cut(s) 740
Sse9I AATT 6 cut(s) 357, 396, 423, 530, 735, 1120
SseBI AGGCCT 1 cut(s) 870
SsiI CCGC 2 cut(s) 838, 840
SspMI CTAG 1 cut(s) 585
StuI AGGCCT 1 cut(s) 870
StyD4I CCNGG 2 cut(s) 592, 969
StyI CCWWGG 6 cut(s) 176, 225, 334, 451, 808, 830
TaaI ACNGT 4 cut(s) 353, 370, 626, 880
TaqI TCGA 6 cut(s) 90, 134, 506, 513, 732, 1011
TasI AATT 6 cut(s) 357, 396, 423, 530, 735, 1120
TatI WGTACW 2 cut(s) 273, 963
TfiI GAWTC 2 cut(s) 172, 537
TscAI CASTG 3 cut(s) 164, 631, 1063
TseFI GTSAC 3 cut(s) 626, 790, 1052
TseI GCWGC 8 cut(s) 25, 122, 143, 230, 233, 236, 281, 941
Tsp45I GTSAC 3 cut(s) 626, 790, 1052
TspDTI ATGAA 2 cut(s) 531, 660
TspGWI ACGGA 1 cut(s) 609
TspRI CASTG 3 cut(s) 164, 631, 1063
Tth111I GACNNNGTC 1 cut(s) 788
Van91I CCANNNNNTGG 2 cut(s) 300, 413
VpaK11BI GGWCC 1 cut(s) 973
XapI RAATTY 3 cut(s) 357, 530, 735
XceI RCATGY 1 cut(s) 461
XcmI CCANNNNNNNNNTGG 4 cut(s) 223, 414, 449, 920
XmnI GAANNNNTTC 2 cut(s) 343, 825
XspI CTAG 1 cut(s) 585
ZrmI AGTACT 1 cut(s) 965
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.