Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0003511

Physical Location & Seq

Genomic Coordinates Forward (+)

4652387 .. 4656714

Gene Structure 4328 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

ATGTTGGTTGCAGAAAAAATGGTAGCCAATGTGACCGGAGACCAAGTTGATTTTGACCCAAGTGCCCCTCCACCGTTCAAGATTGCTGAGATCAGAGATGCAATCCCCAAACACTGCTGGGTAAAGAATCCATGGAGGTCTTTGAGTTATGCTGTTTGGGATGTTTTGGTCGTTTTTGCAATGGCAGCCATAGCCAAATACTTAGACAGTTGGTATGCTTGGCCAATCTACTGGGTTGCTCAGGGAACCATGTTTTGGGCTGTGTTTGTTATCGGACACGATTGTGGCCATGGAAGCTTCTCAGACTCTCGCTTGCTGAATAATTTTGTGGGGCATATTTTGCACTCTGCCATTCTTGTACCTTATCATGGCTGGAGAATTAGCCACAGAACTCACCATCAGAACCATGGAAATGTTGAGAAAGATGAGTCTTGGGTTCCAATGACTGAGTCGCTCTACAAAAAATTGGATAATGGCACAAAAACGTTGAGATTCACAATTCCTTTTCCGTTCCTCGCTTATCCGGTTTATCTGTTTTATAGATCTCCTGGTAAAGAAGGATCTCACTTCCATCCAAGCAGTGACCTATTCTCCCCGAATGAACGATTTGATATTATAACTTCAACTGCTTCGGTTGTTCTAGCTGCTGCTTTGCTGTTGTATTTCTCCATTGTGCAAAGCCCTATTCAAATGCTTAAGTTATATTTTGTTCCTTATTGGATTTTTGTGATGTGGTTGGACATTGTCACGTACTTGCATCACCATGGTTACAAGACAAAGCTCCCTTGGTATCGCGGCAAGGAATGGAGTTACCTGCGAGGAGGGCTTACAACCGTTGATCGTGATTACGGAATGTTTAACAAGATCCATCATGATATTGGTACCCATGTTATACATCATCTGTTTCCTCAAATTCCACATTATCACCTGGAAGAAGCAACGAAGGCAGCGAAGCCGGTTCTAGGGAAGTACTATCGCGAGCCAAAAAAATCAGGGCCAATTCCGTTTCACTTGTTCAAGATCTTGGCTACAAGCATCTATGAAGATAACTATGTCAGTGACGATGGAGAAATAGTTTTTTATCAGACAGATCCTCAGCGTCTTAAAGCTTCTAAGAATAAATCTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3474 FA_desaturase

Protein Analysis

377

Amino Acids

43.58

Weight (kDa)

8.72

Isoelectric Point (pI)

32.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF3474	PF11960	8 - 63	4.6e-26	Domain of unknown function (DUF3474)
FA_desaturase	PF00487	71 - 325	2.2e-33	Fatty acid desaturase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003511)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29980 AT2G29980
fragaria_vesca	FvH4_3g38780 FvH4_3g38780
malus_domestica	MD03G1067900.v1.1 MD03G1068000.v1.1 MD11G1072300.v1.1 MD11G1072600.v1.1
prunus_persica	Prupe.6G055900_v2.0.a1 Prupe.6G055900_v2.0.a1 Prupe.6G055900_v2.0.a1 Prupe.6G055900_v2.0.a1 Prupe.6G055900_v2.0.a1 Prupe.6G055900_v2.0.a1 Prupe.6G055900_v2.0.a1 Prupe.6G056100_v2.0.a1
pyrus_communis	pycom03g05440 pycom11g06020 pycom11g06030
rosa_chinensis	RchiOBHm_Chr5g0069961
rosa_laevigata	RLG00000036110
rosa_multiflora	Rmu_sc0002367.1_g000013
rosa_roxburghii	Rroxscaffold_1G00011100
rosa_rugosa	Rorug05G0401000 Rorug05G0401100 Rorug05G0401200 Rorug05G0401300 Rorug05G0401400 Rorug05G0401500.1 Rorug05G0401600
rosa_samantha	Rh5AG458200 Rh5BG476900 Rh5CG500700 Rh5DG488900
rosa_wichuraiana	Rw5G042780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	617
Acc36I	ACCTGC	1 cut(s)	822
Acc65I	GGTACC	1 cut(s)	881
AccB1I	GGYRCC	1 cut(s)	881
AccB7I	CCANNNNNTGG	1 cut(s)	255
AccII	CGCG	2 cut(s)	795, 978
AciI	CCGC	1 cut(s)	795
AclI	AACGTT	1 cut(s)	485
AclWI	GGATC	3 cut(s)	568, 859, 1085
AcoI	YGGCCR	2 cut(s)	221, 286
AcsI	RAATTY	1 cut(s)	912
AfaI	GTAC	4 cut(s)	360, 752, 883, 971
AfiI	CCNNNNNNNGG	3 cut(s)	255, 368, 962
AflII	CTTAAG	1 cut(s)	695
AgsI	TTSAA	4 cut(s)	79, 624, 689, 1018
AjnI	CCWGG	2 cut(s)	547, 927
AjuI	GAANNNNNNNTTGG	2 cut(s)	238, 270
AleI	CACNNNNGTG	1 cut(s)	282
AluBI	AGCT	4 cut(s)	297, 644, 781, 1109
AluI	AGCT	4 cut(s)	297, 644, 781, 1109
Alw26I	GTCTC	1 cut(s)	33
AlwI	GGATC	3 cut(s)	568, 859, 1085
AoxI	GGCC	3 cut(s)	221, 286, 995
ApeKI	GCWGC	4 cut(s)	185, 644, 647, 947
ApoI	RAATTY	1 cut(s)	912
Asp718I	GGTACC	1 cut(s)	881
AspS9I	GGNCC	1 cut(s)	995
AsuHPI	GGTGA	3 cut(s)	386, 752, 917
BaeGI	GKGCMC	1 cut(s)	67
BaeI	ACNNNNGTAYC	2 cut(s)	873, 906
BalI	TGGCCA	2 cut(s)	223, 288
BanI	GGYRCC	1 cut(s)	881
BbvCI	CCTCAGC	1 cut(s)	1095
BbvI	GCAGC	4 cut(s)	197, 631, 634, 959
BccI	CCATC	4 cut(s)	405, 579, 876, 1058
BciT130I	CCWGG	2 cut(s)	549, 929
BcoDI	GTCTC	1 cut(s)	33
BfaI	CTAG	2 cut(s)	641, 962
BfrI	CTTAAG	1 cut(s)	695
BfuAI	ACCTGC	1 cut(s)	822
BglII	AGATCT	2 cut(s)	542, 1020
BisI	GCNGC	5 cut(s)	186, 645, 648, 796, 948
BlsI	GCNGC	5 cut(s)	187, 646, 649, 797, 949
BmcAI	AGTACT	1 cut(s)	971
Bme1390I	CCNGG	2 cut(s)	549, 929
BmgT120I	GGNCC	1 cut(s)	995
BmiI	GGNNCC	3 cut(s)	247, 438, 883
BmrFI	CCNGG	2 cut(s)	549, 929
BmrI	ACTGGG	1 cut(s)	241
BmsI	GCATC	3 cut(s)	88, 766, 1044
BmuI	ACTGGG	1 cut(s)	241
BpmI	CTGGAG	1 cut(s)	394
Bpu10I	CCTNAGC	2 cut(s)	240, 1095
BsaAI	YACGTR	1 cut(s)	750
BsaI	GGTCTC	1 cut(s)	33
BsaJI	CCNNGG	5 cut(s)	131, 289, 406, 763, 785
BsaWI	WCCGGW	2 cut(s)	35, 523
BsaXI	ACNNNNNCTCC	6 cut(s)	30, 60, 575, 605, 1059, 1089
Bsc4I	CCNNNNNNNGG	3 cut(s)	255, 368, 962
Bse118I	RCCGGY	1 cut(s)	955
Bse1I	ACTGG	1 cut(s)	236
Bse3DI	GCAATG	1 cut(s)	186
BseBI	CCWGG	2 cut(s)	549, 929
BseDI	CCNNGG	5 cut(s)	131, 289, 406, 763, 785
BseGI	GGATG	2 cut(s)	166, 571
BseLI	CCNNNNNNNGG	3 cut(s)	255, 368, 962
BseMI	GCAATG	1 cut(s)	186
BseMII	CTCAG	5 cut(s)	78, 254, 315, 438, 1109
BseNI	ACTGG	1 cut(s)	236
BseRI	GAGGAG	1 cut(s)	834
BseSI	GKGCMC	1 cut(s)	67
BseXI	GCAGC	4 cut(s)	197, 631, 634, 959
BseYI	CCCAGC	1 cut(s)	117
Bsh1236I	CGCG	2 cut(s)	795, 978
BshFI	GGCC	3 cut(s)	223, 288, 997
BshNI	GGYRCC	1 cut(s)	881
BsiSI	CCGG	3 cut(s)	36, 524, 956
BslI	CCNNNNNNNGG	3 cut(s)	255, 368, 962
BsmAI	GTCTC	1 cut(s)	33
BsnI	GGCC	3 cut(s)	223, 288, 997
Bso31I	GGTCTC	1 cut(s)	33
Bsp1286I	GDGCHC	1 cut(s)	67
Bsp143I	GATC	7 cut(s)	90, 542, 560, 838, 864, 1020, 1090
Bsp19I	CCATGG	4 cut(s)	131, 289, 406, 763
Bsp68I	TCGCGA	1 cut(s)	978
BspACI	CCGC	1 cut(s)	795
BspANI	GGCC	3 cut(s)	223, 288, 997
BspCNI	CTCAG	5 cut(s)	79, 253, 314, 439, 1108
BspFNI	CGCG	2 cut(s)	795, 978
BspHI	TCATGA	1 cut(s)	871
BspLI	GGNNCC	3 cut(s)	247, 438, 883
BspMI	ACCTGC	1 cut(s)	822
BspPI	GGATC	3 cut(s)	568, 859, 1085
BspT107I	GGYRCC	1 cut(s)	881
BspTI	CTTAAG	1 cut(s)	695
BspTNI	GGTCTC	1 cut(s)	33
BsrDI	GCAATG	1 cut(s)	186
BsrFI	RCCGGY	1 cut(s)	955
BsrI	ACTGG	1 cut(s)	236
BssAI	RCCGGY	1 cut(s)	955
BssECI	CCNNGG	5 cut(s)	131, 289, 406, 763, 785
BssMI	GATC	7 cut(s)	90, 542, 560, 838, 864, 1020, 1090
BssT1I	CCWWGG	5 cut(s)	131, 289, 406, 763, 785
Bst2UI	CCWGG	2 cut(s)	549, 929
Bst4CI	ACNGT	3 cut(s)	75, 209, 835
BstAFI	CTTAAG	1 cut(s)	695
BstAPI	GCANNNNNTGC	1 cut(s)	340
BstBAI	YACGTR	1 cut(s)	750
BstC8I	GCNNGC	2 cut(s)	314, 980
BstDEI	CTNAG	7 cut(s)	87, 202, 240, 301, 447, 1095, 1113
BstDSI	CCRYGG	4 cut(s)	131, 289, 406, 763
BstF5I	GGATG	2 cut(s)	166, 571
BstFNI	CGCG	2 cut(s)	795, 978
BstKTI	GATC	7 cut(s)	93, 545, 563, 841, 867, 1023, 1093
BstMAI	GTCTC	1 cut(s)	33
BstMBI	GATC	7 cut(s)	90, 542, 560, 838, 864, 1020, 1090
BstMWI	GCNNNNNNNGC	6 cut(s)	185, 191, 294, 340, 823, 944
BstNI	CCWGG	2 cut(s)	549, 929
BstSCI	CCNGG	2 cut(s)	547, 927
BstSLI	GKGCMC	1 cut(s)	67
BstUI	CGCG	2 cut(s)	795, 978
BstV1I	GCAGC	4 cut(s)	197, 631, 634, 959
BstX2I	RGATCY	5 cut(s)	542, 560, 864, 1020, 1090
BstXI	CCANNNNNNTGG	1 cut(s)	231
BstYI	RGATCY	5 cut(s)	542, 560, 864, 1020, 1090
BsuRI	GGCC	3 cut(s)	223, 288, 997
BtgI	CCRYGG	4 cut(s)	131, 289, 406, 763
BtsCI	GGATG	2 cut(s)	166, 571
BtsI	GCAGTG	2 cut(s)	112, 586
BtsIMutI	CAGTG	3 cut(s)	112, 586, 1063
BtuMI	TCGCGA	1 cut(s)	978
BveI	ACCTGC	1 cut(s)	822
Cac8I	GCNNGC	2 cut(s)	314, 980
CciI	TCATGA	1 cut(s)	871
Cfr10I	RCCGGY	1 cut(s)	955
Cfr13I	GGNCC	1 cut(s)	995
CseI	GACGC	1 cut(s)	1088
Csp6I	GTAC	4 cut(s)	359, 751, 882, 970
CviAII	CATG	8 cut(s)	132, 250, 290, 368, 407, 764, 872, 887
CviQI	GTAC	4 cut(s)	359, 751, 882, 970
DdeI	CTNAG	7 cut(s)	87, 202, 240, 301, 447, 1095, 1113
DpnI	GATC	7 cut(s)	92, 544, 562, 840, 866, 1022, 1092
DpnII	GATC	7 cut(s)	90, 542, 560, 838, 864, 1020, 1090
EaeI	YGGCCR	2 cut(s)	221, 286
Eco130I	CCWWGG	5 cut(s)	131, 289, 406, 763, 785
Eco31I	GGTCTC	1 cut(s)	33
EcoRII	CCWGG	2 cut(s)	547, 927
EcoT14I	CCWWGG	5 cut(s)	131, 289, 406, 763, 785
ErhI	CCWWGG	5 cut(s)	131, 289, 406, 763, 785
FaeI	CATG	8 cut(s)	135, 253, 293, 371, 410, 767, 875, 890
FatI	CATG	8 cut(s)	131, 249, 289, 367, 406, 763, 871, 886
Fnu4HI	GCNGC	5 cut(s)	186, 645, 648, 796, 948
FokI	GGATG	2 cut(s)	173, 558
Fsp4HI	GCNGC	5 cut(s)	186, 645, 648, 796, 948
FspBI	CTAG	2 cut(s)	641, 962
GluI	GCNGC	5 cut(s)	186, 645, 648, 796, 948
GsaI	CCCAGC	1 cut(s)	121
GsuI	CTGGAG	1 cut(s)	394
HaeIII	GGCC	3 cut(s)	223, 288, 997
HapII	CCGG	3 cut(s)	36, 524, 956
HgaI	GACGC	1 cut(s)	1088
Hin1II	CATG	8 cut(s)	135, 253, 293, 371, 410, 767, 875, 890
HindIII	AAGCTT	2 cut(s)	295, 1107
HinfI	GANTC	5 cut(s)	127, 305, 428, 449, 492
HpaII	CCGG	3 cut(s)	36, 524, 956
HphI	GGTGA	3 cut(s)	386, 752, 917
Hpy188I	TCNGA	5 cut(s)	95, 275, 304, 402, 1086
Hpy188III	TCNNGA	5 cut(s)	79, 842, 872, 977, 1018
HpyAV	CCTTC	2 cut(s)	551, 937
HpyCH4III	ACNGT	3 cut(s)	75, 209, 835
HpyCH4IV	ACGT	2 cut(s)	485, 749
HpyCH4V	TGCA	6 cut(s)	11, 101, 179, 343, 676, 757
HpyF10VI	GCNNNNNNNGC	6 cut(s)	185, 191, 294, 340, 823, 944
HpyF3I	CTNAG	7 cut(s)	87, 202, 240, 301, 447, 1095, 1113
HpySE526I	ACGT	2 cut(s)	485, 749
Hsp92II	CATG	8 cut(s)	135, 253, 293, 371, 410, 767, 875, 890
KpnI	GGTACC	1 cut(s)	885
Kzo9I	GATC	7 cut(s)	90, 542, 560, 838, 864, 1020, 1090
LmnI	GCTCC	1 cut(s)	786
Lsp1109I	GCAGC	4 cut(s)	197, 631, 634, 959
LweI	GCATC	3 cut(s)	88, 766, 1044
MaeI	CTAG	2 cut(s)	641, 962
MaeII	ACGT	2 cut(s)	485, 749
MaeIII	GTNAC	6 cut(s)	31, 581, 745, 767, 809, 1058
MalI	GATC	7 cut(s)	92, 544, 562, 840, 866, 1022, 1092
MboI	GATC	7 cut(s)	90, 542, 560, 838, 864, 1020, 1090
MboII	GAAGA	2 cut(s)	944, 1055
MflI	RGATCY	5 cut(s)	542, 560, 864, 1020, 1090
MhlI	GDGCHC	1 cut(s)	67
MlsI	TGGCCA	2 cut(s)	223, 288
MluCI	AATT	7 cut(s)	322, 378, 464, 498, 912, 999, 1126
MluNI	TGGCCA	2 cut(s)	223, 288
MlyI	GAGTC	3 cut(s)	299, 437, 458
MmeI	TCCRAC	1 cut(s)	717
MnlI	CCTC	7 cut(s)	78, 129, 524, 812, 815, 918, 1104
Mox20I	TGGCCA	2 cut(s)	223, 288
MscI	TGGCCA	2 cut(s)	223, 288
MseI	TTAA	4 cut(s)	696, 858, 1104, 1129
MslI	CAYNNNNRTG	3 cut(s)	282, 411, 762
Msp20I	TGGCCA	2 cut(s)	223, 288
MspCI	CTTAAG	1 cut(s)	695
MspI	CCGG	3 cut(s)	36, 524, 956
MspR9I	CCNGG	2 cut(s)	549, 929
MvaI	CCWGG	2 cut(s)	549, 929
MvnI	CGCG	2 cut(s)	795, 978
MwoI	GCNNNNNNNGC	6 cut(s)	185, 191, 294, 340, 823, 944
NcoI	CCATGG	4 cut(s)	131, 289, 406, 763
NdeII	GATC	7 cut(s)	90, 542, 560, 838, 864, 1020, 1090
NlaIII	CATG	8 cut(s)	135, 253, 293, 371, 410, 767, 875, 890
NlaIV	GGNNCC	3 cut(s)	247, 438, 883
NmuCI	GTSAC	4 cut(s)	31, 581, 745, 1058
NruI	TCGCGA	1 cut(s)	978
OliI	CACNNNNGTG	1 cut(s)	282
PagI	TCATGA	1 cut(s)	871
PcsI	WCGNNNNNNNCGW	1 cut(s)	947
PfeI	GAWTC	2 cut(s)	127, 492
PflFI	GACNNNGTC	2 cut(s)	448, 743
PflMI	CCANNNNNTGG	1 cut(s)	255
PkrI	GCNGC	5 cut(s)	187, 646, 649, 797, 949
PleI	GAGTC	3 cut(s)	299, 436, 457
PpsI	GAGTC	3 cut(s)	299, 436, 457
Ppu21I	YACGTR	1 cut(s)	750
PsiI	TTATAA	1 cut(s)	617
Psp1406I	AACGTT	1 cut(s)	485
Psp6I	CCWGG	2 cut(s)	547, 927
PspFI	CCCAGC	1 cut(s)	117
PspGI	CCWGG	2 cut(s)	547, 927
PspN4I	GGNNCC	3 cut(s)	247, 438, 883
PspPI	GGNCC	1 cut(s)	995
PsuI	RGATCY	5 cut(s)	542, 560, 864, 1020, 1090
PsyI	GACNNNGTC	2 cut(s)	448, 743
RruI	TCGCGA	1 cut(s)	978
RsaI	GTAC	4 cut(s)	360, 752, 883, 971
RsaNI	GTAC	4 cut(s)	359, 751, 882, 970
RseI	CAYNNNNRTG	3 cut(s)	282, 411, 762
SaqAI	TTAA	4 cut(s)	696, 858, 1104, 1129
SatI	GCNGC	5 cut(s)	186, 645, 648, 796, 948
Sau3AI	GATC	7 cut(s)	90, 542, 560, 838, 864, 1020, 1090
Sau96I	GGNCC	1 cut(s)	995
ScaI	AGTACT	1 cut(s)	971
SchI	GAGTC	3 cut(s)	299, 437, 458
ScrFI	CCNGG	2 cut(s)	549, 929
SduI	GDGCHC	1 cut(s)	67
SfaNI	GCATC	3 cut(s)	88, 766, 1044
SmiMI	CAYNNNNRTG	3 cut(s)	282, 411, 762
SmlI	CTYRAG	1 cut(s)	695
SmoI	CTYRAG	1 cut(s)	695
Sse9I	AATT	7 cut(s)	322, 378, 464, 498, 912, 999, 1126
SsiI	CCGC	1 cut(s)	795
SspMI	CTAG	2 cut(s)	641, 962
StyD4I	CCNGG	2 cut(s)	547, 927
StyI	CCWWGG	5 cut(s)	131, 289, 406, 763, 785
TaaI	ACNGT	3 cut(s)	75, 209, 835
TaiI	ACGT	2 cut(s)	488, 752
TasI	AATT	7 cut(s)	322, 378, 464, 498, 912, 999, 1126
TatI	WGTACW	1 cut(s)	969
TauI	GCSGC	1 cut(s)	798
TfiI	GAWTC	2 cut(s)	127, 492
Tru1I	TTAA	4 cut(s)	696, 858, 1104, 1129
Tru9I	TTAA	4 cut(s)	696, 858, 1104, 1129
TscAI	CASTG	3 cut(s)	119, 586, 1063
TseFI	GTSAC	4 cut(s)	31, 581, 745, 1058
TseI	GCWGC	4 cut(s)	185, 644, 647, 947
Tsp45I	GTSAC	4 cut(s)	31, 581, 745, 1058
TspDTI	ATGAA	2 cut(s)	615, 1056
TspGWI	ACGGA	3 cut(s)	498, 864, 993
TspRI	CASTG	3 cut(s)	119, 586, 1063
Tth111I	GACNNNGTC	2 cut(s)	448, 743
Van91I	CCANNNNNTGG	1 cut(s)	255
Vha464I	CTTAAG	1 cut(s)	695
XapI	RAATTY	1 cut(s)	912
XcmI	CCANNNNNNNNNTGG	2 cut(s)	404, 875
XspI	CTAG	2 cut(s)	641, 962
ZrmI	AGTACT	1 cut(s)	971

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.