Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0008424

Physical Location & Seq

Genomic Coordinates Reverse (-)

10995659 .. 11000219

Gene Structure 4561 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2502 bp

ATGCTCTCACGATCTCTCTGTTCATGTCATTGTCTTCGTCTCCGCTCTCGCCGCCGTCTACACAACCCCATCTCCCTCTTCTGCCCTAAACGATCTTCTCTTCTTCTCATTTCCCTCTCCCCCCAAAGCCCTAATATTCGCGCCATGTCCTCCCGCCCCTCCGCCTTCGACGTACTCATGTCCGGCGCCCGCACCGCCGCCGCCAAGAAAAAGCTCCAGCCTTCTTCATCCAAGAAGCGAAAAACCCTAGACTCCACTCATCCTATCGAAAAACCCCAATTGCTATCTACGCCCGAAAGTGCCGGTACAACCCAGGACCCAGAATCCGTGGAACTTAAAGCTCCGGAATCCAAGGAAATCAAAGAAGCTCAAGAAAATTCGAGCTGTGGCGGCAACAAGGTAGTTCCGGCAGGGAAGAAAGTGTGTGTGGCGGCGGGTGCTGAGGAGCGGACCGAGGAATTGAAGAGCCGAATAGGATTGCAATGTGAGGTGAGTTTTGATTCTTCCATGATCATTCATAGGGAGTATGCTGGTAATTTAGAAACTTGTATGGACAAGAACAGAAAAAATGAAAGAAAGTTCACTCTCTCCATATTTGAAACTGGTTGCTGTGTTGTTTGCTATGTTGTTCTCGATCGTGACTACTACAAGGGCATTCGGGATAAGGGTGGTGGCAAATTAGACTACGGGTTGCAGTTGTTTGAAAAAATGAGGATACAAGATGTCTTTTCATGGACTTCAATCATTACAACTTATGTTTGGACAGGTCAAGAGGACCGGGCAATCAAAGCCTTTATAAGAATGCAGGAAGCCGGTGTCAGTCCTAACGAATACACTTTTGCAGGTGTCATGTCTAGAGTTGCCAATCTTGGTAGAGTTGAATGGGGTGAACAATTGCATGCCCACGTTTTACAAAGGGGTCTTATCTCTTTGTTGTCGGTGGGAAATTCCATTGTAACCATGTATGCAAAATGTGGGTGTTTGGCTTCAGGTTCTAAGGTGTTTCATGAGATGAGCAGGAGAGATATTGTTTCATGGAGCACTTTAATTGCCGGGTATTCTCAAGGAGGTCACGGGGAAGAAGCTTTTCAGTTTTTGTCGTGGATGAGAAGGGACGGACCACAACCAAATGAGTTTGCTCTTGCTAGTGTATTGTGTGTCTGTGGAAGCATGGCAATGCTTGAACAAGGGAAACAACTGCACGCTAATTTTCTGTTTGTCGGTTTCAATGTTTTAAAAGACGCGCCCCGAGGCGCGTCTAGACGGTTTTGGAGGCAGGGCGGGAGTGATAACGCCTCTGCCCAGTGGGAGTGGACGAAAACTTGCCGAGGCGTGGTCGAGGCAAGACTAGGCGGCTTCGCCTCACGCCTCGCGCCTAGGCTGAGCTATCCCTCGGACGCCTCGCCCACGCCTCATGCTTTTAATACATTGGTCGGTTTAGAGTTTACATCTATGGTACAAAGTGCTCTTGTGAATATGCATTCGAAATGTGGAAGTATAAAAGAAGCTGCAAAGATCGATCATGTTACAGAACTTAGTGATATTATTTCATGGACGGCGATGATTAACGGATATGCTGAACATGGGTTCTACCGAGAACCCATTGTTCTGTTTAAGAAGATTCCTAGGGTTGGTCTGAAACTAGACTTGGTGACCTTCATCGGTGTTCTTGTTGCTTGTTGCCATGCTGGAATGGTTGATCTTGGTTTCCACTACAATTCAATGAGCAATGACTTTGGGATTAATCCTGCAAAAGAACACTATGGATATGTTCGATCGATCAAAAGTATGCCATTTCAACAGGATGATGTTGTTTGGTCTACTCTCCTTAGAGCTTTTAGGCTCCATGGTGACACCGGCTGTGGAAGACGCGCTGTAGATGTGATCCTTAAATTGGATCCGAGTTGTACAGCGACTCACATAACCCTGGCCAACATGTATGCTGCTAAAGGAAAATGGAGGGAAGCGGTAGAAGTAAGGAAAATGATGAGATCCAAGGGGGTAATTAAGGAGCTGGGATGGTCCTGGATAAAGGTCAAGGATCAACTTTCTGCATTTGTCTCAGGAGAAGAAAAAAAAAACCATATCAAGGCACTTCTTGTTGCTGCTACTGACTGTGAACCTTTATATCTGATCCGTTTGCTTCAGACAAAGTTGCGAATTGGATTGGCAGAGAAGACTATTTTAGCTGCATTGGGACAAGCTGCAGTGTATACTGAAAAAAATTCTACACCACCTCCTCATATTCAGAGTCCTCTAGAAGAGGTGAGTTTAGGTTTGTTAGATCAAATGATCTACGGTAAAATCGTCCCTGCCCTTTTAAGTGGCAGCGTGTGGAATCTTCCAGAGATATGCAACTTTACTTTGGGTGTCCCAGTTGGACCTATGCTAGCAAAACCAACTAAAGGGGTATCTGAGATTGTACAGAAGTTTCAGGATACAGAATACATAAGTGAATACAAGTATGATGGAGAACGTGCCCAGGTGATACCATCTTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00051 map00051

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

834

Amino Acids

92.32

Weight (kDa)

9.07

Isoelectric Point (pI)

48.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	241 - 285	3.3e-08	PPR repeat family
PPR_2	PF13041	341 - 381	2.3e-08	PPR repeat family
E_motif	PF20431	616 - 678	1.5e-08	E motif
DNA_ligase_A_N	PF04675	682 - 732	3.4e-09	DNA ligase N terminus
DNA_ligase_A_M	PF01068	795 - 829	6.5e-08	ATP dependent DNA ligase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008424)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47840
fragaria_vesca	FvH4_1g12800 FvH4_2g13800
malus_domestica	MD02G1143600.v1.1 MD15G1256800.v1.1
prunus_persica	Prupe.7G158100_v2.0.a1
pyrus_communis	pycom02g11350 pycom11g12090 pycom15g22480
rosa_chinensis	RchiOBHm_Chr2g0100941
rosa_laevigata	RLG00000016992 RLG00000017027
rosa_multiflora	Rmu_sc0001659.1_g000049 Rmu_sc0001862.1_g000015
rosa_roxburghii	Rroxscaffold_2G00141730
rosa_rugosa	Rorug02G0091300 Rorug02G0093800
rosa_samantha	Rh2AG141500 Rh2BG143000 Rh2BG146700 Rh2CG147900 Rh2DG147200
rosa_wichuraiana	Rw2G011100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	797
AarI	CACCTGC	1 cut(s)	833
Acc36I	ACCTGC	1 cut(s)	833
AccB1I	GGYRCC	1 cut(s)	185
AccBSI	CCGCTC	2 cut(s)	45, 448
AccI	GTMKAC	3 cut(s)	58, 1820, 2213
AccII	CGCG	5 cut(s)	141, 1244, 1256, 1373, 1872
AccIII	TCCGGA	1 cut(s)	343
AclWI	GGATC	6 cut(s)	1879, 1892, 1905, 1986, 2049, 2128
AcoI	YGGCCR	1 cut(s)	1929
AcsI	RAATTY	3 cut(s)	376, 946, 2224
AcuI	CTGAAG	2 cut(s)	972, 2129
AcyI	GRCGYC	2 cut(s)	186, 1398
AfaI	GTAC	5 cut(s)	174, 307, 1458, 1909, 2424
AfiI	CCNNNNNNNGG	5 cut(s)	1333, 1631, 1894, 2089, 2405
AflIII	ACRYGT	1 cut(s)	1935
AgsI	TTSAA	9 cut(s)	463, 599, 704, 741, 881, 1184, 1228, 1722, 1799
AjnI	CCWGG	4 cut(s)	312, 1926, 2024, 2481
AjuI	GAANNNNNNNTTGG	2 cut(s)	1631, 1663
Alw21I	GWGCWC	2 cut(s)	1043, 1468
Alw26I	GTCTC	2 cut(s)	44, 2065
AlwI	GGATC	6 cut(s)	1879, 1892, 1905, 1986, 2049, 2128
Ama87I	CYCGRG	1 cut(s)	1248
Aor13HI	TCCGGA	1 cut(s)	343
AoxI	GGCC	1 cut(s)	1929
ApeKI	GCWGC	6 cut(s)	1508, 1943, 2105, 2189, 2204, 2328
ApoI	RAATTY	3 cut(s)	376, 946, 2224
AseI	ATTAAT	1 cut(s)	1743
Asp700I	GAANNNNTTC	1 cut(s)	1086
AspA2I	CCTAGG	2 cut(s)	1376, 1625
AspLEI	GCGC	6 cut(s)	143, 188, 1246, 1256, 1375, 1874
AspS9I	GGNCC	6 cut(s)	316, 450, 775, 1118, 2022, 2381
AsuC2I	CCSGG	2 cut(s)	779, 1054
AsuHPI	GGTGA	6 cut(s)	502, 899, 1663, 1862, 2278, 2497
AsuII	TTCGAA	1 cut(s)	1484
AsuNHI	GCTAGC	1 cut(s)	2389
AvaI	CYCGRG	1 cut(s)	1248
AvaII	GGWCC	6 cut(s)	316, 450, 775, 1118, 2022, 2381
AvrII	CCTAGG	2 cut(s)	1376, 1625
BaeGI	GKGCMC	1 cut(s)	2482
BalI	TGGCCA	1 cut(s)	1931
BamHI	GGATCC	1 cut(s)	1897
BanI	GGYRCC	1 cut(s)	185
BbsI	GAAGAC	3 cut(s)	26, 1873, 2183
Bbv12I	GWGCWC	2 cut(s)	1043, 1468
BbvCI	CCTCAGC	1 cut(s)	441
BbvI	GCAGC	6 cut(s)	1495, 1930, 2092, 2176, 2191, 2340
BccI	CCATC	4 cut(s)	77, 2013, 2462, 2500
BceAI	ACGGC	2 cut(s)	39, 1572
BciT130I	CCWGG	4 cut(s)	314, 1928, 2026, 2483
BciVI	GTATCC	2 cut(s)	708, 2431
BclI	TGATCA	1 cut(s)	510
BcnI	CCSGG	2 cut(s)	779, 1054
BcoDI	GTCTC	2 cut(s)	44, 2065
BfmI	CTRYAG	2 cut(s)	1875, 2205
BfoI	RGCGCY	1 cut(s)	189
BfuAI	ACCTGC	1 cut(s)	833
BfuI	GTATCC	2 cut(s)	708, 2431
BlnI	CCTAGG	2 cut(s)	1376, 1625
BlpI	GCTNAGC	1 cut(s)	1382
Bme1390I	CCNGG	6 cut(s)	314, 779, 1054, 1928, 2026, 2483
Bme18I	GGWCC	6 cut(s)	316, 450, 775, 1118, 2022, 2381
BmeT110I	CYCGRG	1 cut(s)	1248
BmgT120I	GGNCC	6 cut(s)	316, 450, 775, 1118, 2022, 2381
BmiI	GGNNCC	4 cut(s)	187, 318, 1844, 1899
BmrFI	CCNGG	6 cut(s)	314, 779, 1054, 1928, 2026, 2483
BmrI	ACTGGG	2 cut(s)	1297, 2369
BmtI	GCTAGC	1 cut(s)	2393
BmuI	ACTGGG	2 cut(s)	1297, 2369
BpiI	GAAGAC	3 cut(s)	26, 1873, 2183
BpmI	CTGGAG	1 cut(s)	200
Bpu10I	CCTNAGC	1 cut(s)	441
Bpu1102I	GCTNAGC	1 cut(s)	1382
Bpu14I	TTCGAA	1 cut(s)	1484
BpuEI	CTTGAG	2 cut(s)	354, 1047
BpuMI	CCSGG	2 cut(s)	779, 1054
Bsa29I	ATCGAT	2 cut(s)	1518, 1778
BsaHI	GRCGYC	2 cut(s)	186, 1398
BsaWI	WCCGGW	1 cut(s)	343
BsaXI	ACNNNNNCTCC	4 cut(s)	56, 86, 2221, 2251
Bsc4I	CCNNNNNNNGG	5 cut(s)	1333, 1631, 1894, 2089, 2405
Bse118I	RCCGGY	3 cut(s)	302, 812, 1856
Bse1I	ACTGG	3 cut(s)	607, 1303, 2375
Bse3DI	GCAATG	3 cut(s)	488, 1182, 1735
BseAI	TCCGGA	1 cut(s)	343
BseBI	CCWGG	4 cut(s)	314, 1928, 2026, 2483
BseCI	ATCGAT	2 cut(s)	1518, 1778
BseGI	GGATG	5 cut(s)	227, 259, 1110, 1810, 2024
BseLI	CCNNNNNNNGG	5 cut(s)	1333, 1631, 1894, 2089, 2405
BseMI	GCAATG	3 cut(s)	488, 1182, 1735
BseMII	CTCAG	4 cut(s)	432, 1373, 2076, 2406
BseNI	ACTGG	3 cut(s)	607, 1303, 2375
BseRI	GAGGAG	2 cut(s)	458, 2229
BseSI	GKGCMC	1 cut(s)	2482
BseXI	GCAGC	6 cut(s)	1495, 1930, 2092, 2176, 2191, 2340
BseYI	CCCAGC	1 cut(s)	2014
BsgI	GTGCAG	1 cut(s)	1184
Bsh1236I	CGCG	5 cut(s)	141, 1244, 1256, 1373, 1872
Bsh1285I	CGRYCG	2 cut(s)	637, 1778
BshFI	GGCC	1 cut(s)	1931
BshNI	GGYRCC	1 cut(s)	185
BshVI	ATCGAT	2 cut(s)	1518, 1778
BsiEI	CGRYCG	2 cut(s)	637, 1778
BsiHKAI	GWGCWC	2 cut(s)	1043, 1468
BsiHKCI	CYCGRG	1 cut(s)	1248
BsiSI	CCGG	8 cut(s)	183, 303, 344, 407, 778, 813, 1053, 1857
BslFI	GGGAC	4 cut(s)	1127, 2211, 2294, 2357
BslI	CCNNNNNNNGG	5 cut(s)	1333, 1631, 1894, 2089, 2405
BsmAI	GTCTC	2 cut(s)	44, 2065
BsmBI	CGTCTC	1 cut(s)	44
BsmFI	GGGAC	4 cut(s)	1127, 2211, 2294, 2357
BsmI	GAATGC	3 cut(s)	654, 807, 1480
BsnI	GGCC	1 cut(s)	1931
BsoBI	CYCGRG	1 cut(s)	1248
Bsp119I	TTCGAA	1 cut(s)	1484
Bsp1286I	GDGCHC	3 cut(s)	1043, 1468, 2482
Bsp13I	TCCGGA	1 cut(s)	343
Bsp1407I	TGTACA	2 cut(s)	1907, 2422
Bsp1720I	GCTNAGC	1 cut(s)	1382
Bsp19I	CCATGG	1 cut(s)	1846
BspANI	GGCC	1 cut(s)	1931
BspCNI	CTCAG	4 cut(s)	433, 1374, 2075, 2407
BspDI	ATCGAT	2 cut(s)	1518, 1778
BspEI	TCCGGA	1 cut(s)	343
BspFNI	CGCG	5 cut(s)	141, 1244, 1256, 1373, 1872
BspHI	TCATGA	1 cut(s)	1006
BspLI	GGNNCC	4 cut(s)	187, 318, 1844, 1899
BspMAI	CTGCAG	1 cut(s)	2209
BspMI	ACCTGC	1 cut(s)	833
BspOI	GCTAGC	1 cut(s)	2393
BspPI	GGATC	6 cut(s)	1879, 1892, 1905, 1986, 2049, 2128
BspQI	GCTCTTC	1 cut(s)	458
BspT104I	TTCGAA	1 cut(s)	1484
BspT107I	GGYRCC	1 cut(s)	185
BsrBI	CCGCTC	2 cut(s)	45, 448
BsrDI	GCAATG	3 cut(s)	488, 1182, 1735
BsrFI	RCCGGY	3 cut(s)	302, 812, 1856
BsrGI	TGTACA	2 cut(s)	1907, 2422
BsrI	ACTGG	3 cut(s)	607, 1303, 2375
BssAI	RCCGGY	3 cut(s)	302, 812, 1856
BssNAI	GTATAC	1 cut(s)	2214
BssNI	GRCGYC	2 cut(s)	186, 1398
BssT1I	CCWWGG	5 cut(s)	351, 1376, 1625, 1846, 1995
Bst1107I	GTATAC	1 cut(s)	2214
Bst2UI	CCWGG	4 cut(s)	314, 1928, 2026, 2483
Bst4CI	ACNGT	3 cut(s)	1266, 2117, 2300
Bst6I	CTCTTC	4 cut(s)	83, 105, 458, 2256
BstACI	GRCGYC	2 cut(s)	186, 1398
BstAUI	TGTACA	2 cut(s)	1907, 2422
BstBI	TTCGAA	1 cut(s)	1484
BstC8I	GCNNGC	4 cut(s)	190, 900, 1203, 2391
BstDEI	CTNAG	7 cut(s)	441, 996, 1382, 1535, 1829, 2062, 2415
BstDSI	CCRYGG	2 cut(s)	327, 1846
BstEII	GGTNACC	1 cut(s)	1651
BstF5I	GGATG	5 cut(s)	227, 259, 1110, 1810, 2024
BstFNI	CGCG	5 cut(s)	141, 1244, 1256, 1373, 1872
BstH2I	RGCGCY	1 cut(s)	189
BstHHI	GCGC	6 cut(s)	143, 188, 1246, 1256, 1375, 1874
BstMAI	GTCTC	2 cut(s)	44, 2065
BstMCI	CGRYCG	2 cut(s)	637, 1778
BstMWI	GCNNNNNNNGC	6 cut(s)	51, 194, 289, 390, 437, 788
BstNI	CCWGG	4 cut(s)	314, 1928, 2026, 2483
BstNSI	RCATGY	2 cut(s)	902, 1939
BstPI	GGTNACC	1 cut(s)	1651
BstSCI	CCNGG	6 cut(s)	312, 777, 1052, 1926, 2024, 2481
BstSFI	CTRYAG	2 cut(s)	1875, 2205
BstSLI	GKGCMC	1 cut(s)	2482
BstUI	CGCG	5 cut(s)	141, 1244, 1256, 1373, 1872
BstV1I	GCAGC	6 cut(s)	1495, 1930, 2092, 2176, 2191, 2340
BstV2I	GAAGAC	3 cut(s)	26, 1873, 2183
BstX2I	RGATCY	2 cut(s)	1897, 1991
BstYI	RGATCY	2 cut(s)	1897, 1991
BstZ17I	GTATAC	1 cut(s)	2214
Bsu15I	ATCGAT	2 cut(s)	1518, 1778
BsuI	GTATCC	2 cut(s)	708, 2431
BsuRI	GGCC	1 cut(s)	1931
BsuTUI	ATCGAT	2 cut(s)	1518, 1778
BtgI	CCRYGG	2 cut(s)	327, 1846
BtgZI	GCGATG	1 cut(s)	1574
BtsCI	GGATG	5 cut(s)	227, 259, 1110, 1810, 2024
BtsI	GCAGTG	1 cut(s)	2214
BtsIMutI	CAGTG	2 cut(s)	1310, 2214
BveI	ACCTGC	1 cut(s)	833
Cac8I	GCNNGC	4 cut(s)	190, 900, 1203, 2391
CciI	TCATGA	1 cut(s)	1006
CfoI	GCGC	6 cut(s)	143, 188, 1246, 1256, 1375, 1874
Cfr10I	RCCGGY	3 cut(s)	302, 812, 1856
Cfr13I	GGNCC	6 cut(s)	316, 450, 775, 1118, 2022, 2381
ClaI	ATCGAT	2 cut(s)	1518, 1778
CpoI	CGGWCCG	1 cut(s)	450
CseI	GACGC	4 cut(s)	1245, 1250, 1406, 1878
Csp6I	GTAC	5 cut(s)	173, 306, 1457, 1908, 2423
CspI	CGGWCCG	1 cut(s)	450
CviQI	GTAC	5 cut(s)	173, 306, 1457, 1908, 2423
DdeI	CTNAG	7 cut(s)	441, 996, 1382, 1535, 1829, 2062, 2415
DinI	GGCGCC	1 cut(s)	187
DraI	TTTAAA	1 cut(s)	1236
EaeI	YGGCCR	1 cut(s)	1929
Eam1104I	CTCTTC	4 cut(s)	83, 105, 458, 2256
EarI	CTCTTC	4 cut(s)	83, 105, 458, 2256
EciI	GGCGGA	1 cut(s)	151
Eco130I	CCWWGG	5 cut(s)	351, 1376, 1625, 1846, 1995
Eco47I	GGWCC	6 cut(s)	316, 450, 775, 1118, 2022, 2381
Eco57I	CTGAAG	2 cut(s)	972, 2129
Eco88I	CYCGRG	1 cut(s)	1248
Eco91I	GGTNACC	1 cut(s)	1651
EcoO109I	RGGNCCY	1 cut(s)	316
EcoO65I	GGTNACC	1 cut(s)	1651
EcoRII	CCWGG	4 cut(s)	312, 1926, 2024, 2481
EcoT14I	CCWWGG	5 cut(s)	351, 1376, 1625, 1846, 1995
EcoT22I	ATGCAT	1 cut(s)	1482
EgeI	GGCGCC	1 cut(s)	187
EheI	GGCGCC	1 cut(s)	187
ErhI	CCWWGG	5 cut(s)	351, 1376, 1625, 1846, 1995
Esp3I	CGTCTC	1 cut(s)	44
FaqI	GGGAC	4 cut(s)	1127, 2211, 2294, 2357
FauI	CCCGC	4 cut(s)	161, 197, 427, 1274
FbaI	TGATCA	1 cut(s)	510
FblI	GTMKAC	3 cut(s)	58, 1820, 2213
FokI	GGATG	5 cut(s)	214, 246, 1117, 1817, 2031
GlaI	GCGC	6 cut(s)	142, 187, 1245, 1255, 1374, 1873
GsaI	CCCAGC	1 cut(s)	2018
GsuI	CTGGAG	1 cut(s)	200
HaeII	RGCGCY	1 cut(s)	189
HaeIII	GGCC	1 cut(s)	1931
HapII	CCGG	8 cut(s)	183, 303, 344, 407, 778, 813, 1053, 1857
HgaI	GACGC	4 cut(s)	1245, 1250, 1406, 1878
HhaI	GCGC	6 cut(s)	143, 188, 1246, 1256, 1375, 1874
Hin1I	GRCGYC	2 cut(s)	186, 1398
Hin6I	GCGC	6 cut(s)	141, 186, 1244, 1254, 1373, 1872
HinP1I	GCGC	6 cut(s)	141, 186, 1244, 1254, 1373, 1872
HindIII	AAGCTT	1 cut(s)	1083
HinfI	GANTC	8 cut(s)	251, 323, 347, 500, 1621, 1915, 2251, 2338
HpaII	CCGG	8 cut(s)	183, 303, 344, 407, 778, 813, 1053, 1857
HphI	GGTGA	6 cut(s)	502, 899, 1663, 1862, 2278, 2497
Hpy166II	GTNNAC	8 cut(s)	59, 582, 890, 1314, 1446, 1821, 2120, 2214
Hpy188I	TCNGA	7 cut(s)	1396, 1638, 1902, 2133, 2148, 2250, 2416
Hpy8I	GTNNAC	8 cut(s)	59, 582, 890, 1314, 1446, 1821, 2120, 2214
Hpy99I	CGWCG	1 cut(s)	173
HpyAV	CCTTC	4 cut(s)	175, 231, 1104, 1666
HpyCH4III	ACNGT	3 cut(s)	1266, 2117, 2300
HpyCH4IV	ACGT	3 cut(s)	171, 906, 2476
HpyF10VI	GCNNNNNNNGC	6 cut(s)	51, 194, 289, 390, 437, 788
HpyF3I	CTNAG	7 cut(s)	441, 996, 1382, 1535, 1829, 2062, 2415
HpySE526I	ACGT	3 cut(s)	171, 906, 2476
Hsp92I	GRCGYC	2 cut(s)	186, 1398
HspAI	GCGC	6 cut(s)	141, 186, 1244, 1254, 1373, 1872
KasI	GGCGCC	1 cut(s)	185
Kpn2I	TCCGGA	1 cut(s)	343
Ksp22I	TGATCA	1 cut(s)	510
LguI	GCTCTTC	1 cut(s)	458
LmnI	GCTCC	6 cut(s)	219, 346, 445, 1038, 1848, 2011
Lsp1109I	GCAGC	6 cut(s)	1495, 1930, 2092, 2176, 2191, 2340
MaeII	ACGT	3 cut(s)	171, 906, 2476
MaeIII	GTNAC	6 cut(s)	638, 955, 1070, 1525, 1651, 1850
MbiI	CCGCTC	2 cut(s)	45, 448
MfeI	CAATTG	2 cut(s)	278, 893
MflI	RGATCY	2 cut(s)	1897, 1991
MhlI	GDGCHC	3 cut(s)	1043, 1468, 2482
MlsI	TGGCCA	1 cut(s)	1931
MluNI	TGGCCA	1 cut(s)	1931
Mly113I	GGCGCC	1 cut(s)	186
MlyI	GAGTC	3 cut(s)	245, 1909, 2260
MmeI	TCCRAC	1 cut(s)	2359
Mox20I	TGGCCA	1 cut(s)	1931
Mph1103I	ATGCAT	1 cut(s)	1482
MroI	TCCGGA	1 cut(s)	343
MroXI	GAANNNNTTC	1 cut(s)	1086
MscI	TGGCCA	1 cut(s)	1931
MslI	CAYNNNNRTG	1 cut(s)	1175
Msp20I	TGGCCA	1 cut(s)	1931
MspI	CCGG	8 cut(s)	183, 303, 344, 407, 778, 813, 1053, 1857
MspR9I	CCNGG	6 cut(s)	314, 779, 1054, 1928, 2026, 2483
MunI	CAATTG	2 cut(s)	278, 893
Mva1269I	GAATGC	3 cut(s)	654, 807, 1480
MvaI	CCWGG	4 cut(s)	314, 1928, 2026, 2483
MvnI	CGCG	5 cut(s)	141, 1244, 1256, 1373, 1872
MwoI	GCNNNNNNNGC	6 cut(s)	51, 194, 289, 390, 437, 788
NarI	GGCGCC	1 cut(s)	186
NciI	CCSGG	2 cut(s)	779, 1054
NcoI	CCATGG	1 cut(s)	1846
NheI	GCTAGC	1 cut(s)	2389
NlaIV	GGNNCC	4 cut(s)	187, 318, 1844, 1899
NmeAIII	GCCGAG	1 cut(s)	1352
NmuCI	GTSAC	4 cut(s)	638, 1070, 1651, 1850
NsiI	ATGCAT	1 cut(s)	1482
NspI	RCATGY	2 cut(s)	902, 1939
NspV	TTCGAA	1 cut(s)	1484
PaeI	GCATGC	1 cut(s)	902
PagI	TCATGA	1 cut(s)	1006
PaqCI	CACCTGC	1 cut(s)	833
PciI	ACATGT	1 cut(s)	1935
PciSI	GCTCTTC	1 cut(s)	458
PcsI	WCGNNNNNNNCGW	1 cut(s)	2304
PctI	GAATGC	3 cut(s)	654, 807, 1480
PdmI	GAANNNNTTC	1 cut(s)	1086
PfeI	GAWTC	5 cut(s)	323, 347, 500, 1621, 2338
PfoI	TCCNGGA	1 cut(s)	2024
Ple19I	CGATCG	2 cut(s)	637, 1778
PleI	GAGTC	3 cut(s)	245, 1909, 2259
PluTI	GGCGCC	1 cut(s)	189
PpsI	GAGTC	3 cut(s)	245, 1909, 2259
PpuMI	RGGWCCY	1 cut(s)	316
PscI	ACATGT	1 cut(s)	1935
PshBI	ATTAAT	1 cut(s)	1743
PsiI	TTATAA	1 cut(s)	797
Psp5II	RGGWCCY	1 cut(s)	316
Psp6I	CCWGG	4 cut(s)	312, 1926, 2024, 2481
PspEI	GGTNACC	1 cut(s)	1651
PspFI	CCCAGC	1 cut(s)	2014
PspGI	CCWGG	4 cut(s)	312, 1926, 2024, 2481
PspN4I	GGNNCC	4 cut(s)	187, 318, 1844, 1899
PspPI	GGNCC	6 cut(s)	316, 450, 775, 1118, 2022, 2381
PspPPI	RGGWCCY	1 cut(s)	316
PstI	CTGCAG	1 cut(s)	2209
PsuI	RGATCY	2 cut(s)	1897, 1991
PvuI	CGATCG	2 cut(s)	637, 1778
RsaI	GTAC	5 cut(s)	174, 307, 1458, 1909, 2424
RsaNI	GTAC	5 cut(s)	173, 306, 1457, 1908, 2423
RseI	CAYNNNNRTG	1 cut(s)	1175
Rsr2I	CGGWCCG	1 cut(s)	450
RsrII	CGGWCCG	1 cut(s)	450
SapI	GCTCTTC	1 cut(s)	458
Sau96I	GGNCC	6 cut(s)	316, 450, 775, 1118, 2022, 2381
SchI	GAGTC	3 cut(s)	245, 1909, 2260
ScrFI	CCNGG	6 cut(s)	314, 779, 1054, 1928, 2026, 2483
SduI	GDGCHC	3 cut(s)	1043, 1468, 2482
SfcI	CTRYAG	2 cut(s)	1875, 2205
SfoI	GGCGCC	1 cut(s)	187
SfuI	TTCGAA	1 cut(s)	1484
SinI	GGWCC	6 cut(s)	316, 450, 775, 1118, 2022, 2381
SmiMI	CAYNNNNRTG	1 cut(s)	1175
SmlI	CTYRAG	2 cut(s)	369, 1062
SmoI	CTYRAG	2 cut(s)	369, 1062
SphI	GCATGC	1 cut(s)	902
SspDI	GGCGCC	1 cut(s)	185
SspI	AATATT	1 cut(s)	136
StyD4I	CCNGG	6 cut(s)	312, 777, 1052, 1926, 2024, 2481
StyI	CCWWGG	5 cut(s)	351, 1376, 1625, 1846, 1995
TaaI	ACNGT	3 cut(s)	1266, 2117, 2300
TaiI	ACGT	3 cut(s)	174, 909, 2479
TaqI	TCGA	9 cut(s)	168, 267, 380, 633, 1338, 1484, 1518, 1774, 1778
TaqII	GACCGA	1 cut(s)	467
TatI	WGTACW	2 cut(s)	1907, 2422
TauI	GCSGC	6 cut(s)	54, 200, 203, 393, 434, 1356
TfiI	GAWTC	5 cut(s)	323, 347, 500, 1621, 2338
TscAI	CASTG	2 cut(s)	1310, 2214
TseFI	GTSAC	4 cut(s)	638, 1070, 1651, 1850
TseI	GCWGC	6 cut(s)	1508, 1943, 2105, 2189, 2204, 2328
Tsp45I	GTSAC	4 cut(s)	638, 1070, 1651, 1850
TspDTI	ATGAA	9 cut(s)	12, 216, 506, 585, 720, 995, 1023, 1539, 1648
TspGWI	ACGGA	4 cut(s)	316, 1131, 1584, 2126
TspRI	CASTG	2 cut(s)	1310, 2214
VpaK11BI	GGWCC	6 cut(s)	316, 450, 775, 1118, 2022, 2381
VspI	ATTAAT	1 cut(s)	1743
XapI	RAATTY	3 cut(s)	376, 946, 2224
XbaI	TCTAGA	3 cut(s)	854, 1259, 2257
XceI	RCATGY	2 cut(s)	902, 1939
XmaJI	CCTAGG	2 cut(s)	1376, 1625
XmiI	GTMKAC	3 cut(s)	58, 1820, 2213
XmnI	GAANNNNTTC	1 cut(s)	1086
Zsp2I	ATGCAT	1 cut(s)	1482

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.