Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0006193

Physical Location & Seq

Genomic Coordinates Reverse (-)

11682055 .. 11684885

Gene Structure 2831 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g12730.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGGCACCAGGCTTCATAAACCAATTTTATGAAGTACCTGATTATTGGAAAACATATGTGCATGAGGTCGATGAAGAAAGGGAAATGTGGATGAACTCTTTCTATAAAGGTCCACTGAGGATACCCATGCCTGCTGAGCTTGAATACTGGTGGTCAAGGGATGAAACTCCAGAATTTGTTCTTGTTAACAAGGAACCAGAGACTGATCCTGAAGACCCATCGAAGCTTGTATATACTGAAGATCCCATAATCCTACACACACGAACTGGACGGGTAATCAACTATATTAATGATGAAAAATATGGGGTGTGCTTATTTTGGCAGCCGCTTCTGAAAGATGGGGAAGAGGTGGACCCAAAAAAGGTGGAGTTCCTTCCCCTTGGTTTTGATGAGTTCTATGGAAGAAATGTTGATGCGAAGAAGAAAAATTTATGGATGCGTGTAGTATCAGCGGTAGAAAATGCATGCAAGCCCATTTTTGAAAAAGTAGAGAAATGGACTGAAGAGAAGAGGAAAGCCGGTGAGTTGAAGTTGAAGTTGATTGAAAAAGAACTTGAACTTGTAGAGGCTGAGTTGTGCCTAGAAGAGGTAATTGAGGATATGGATGAGGAGTTAAAGAGGAGAGAGAAAGAGGAGAAGAAGGTCGAAGTGGGTTTGCAGGAGGAAGAAGATACTTCTGCTGCATCGGCTAAGCAAGATGAGAAACCCTTAGTTGAAGAGGATGAAGATGAAGAGGAAGATGAAGATGAGGATGATGTTGCGCCATCAAGTTTTGGTTCTGCAACTGCAGATCAATCGAGTTTGCAACTAAAAATGGCCAGAAGGGAAACAAACCTGGGAAATCTCCATTTTCTTCGTCTACATTGGCATTTGCGTCAAGTAGCCTCGTCTCTGGAGTTCCATCCAGGTTACAACAATCATTTTCGACTTGGAAAAAGAGTAGAGCAATGCCGAATGCAACTATTCCCTCATGCAATGAAGACTCTAGTTGCCTCCCAGCCGTTTCAGTCAGTTTCCCTCCGGTGGTTGGTCCAAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006605 GO:0006810 GO:0006886 GO:0006996 GO:0007275 GO:0008104 GO:0008150 GO:0008565 GO:0009507 GO:0009526 GO:0009528 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009657 GO:0009658 GO:0009706 GO:0009790 GO:0009791 GO:0009793 GO:0009941 GO:0009987 GO:0010154 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0017038 GO:0019866 GO:0022414 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0033036 GO:0033365 GO:0034357 GO:0034613 GO:0042170 GO:0042651 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055035 GO:0055085 GO:0061458 GO:0065002 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072596 GO:0072598

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MORN

Protein Analysis

347

Amino Acids

40.78

Weight (kDa)

4.78

Isoelectric Point (pI)

58.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006193)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22640 AT5G22640 AT5G22640
fragaria_vesca	FvH4_3g29910 FvH4_3g29910 FvH4_3g29910
malus_domestica	MD03G1134600.v1.1 MD11G1157100.v1.1
prunus_persica	Prupe.6G118900_v2.0.a1 Prupe.6G118900_v2.0.a1
pyrus_communis	pycom03g09060 pycom11g12730
rosa_chinensis	RchiOBHm_Chr5g0055251
rosa_laevigata	RLG00000034978
rosa_multiflora	Rmu_co8251283.1_g000001 Rmu_co8349015.1_g000001 Rmu_sc0003110.1_g000015 Rmu_sc0013362.1_g000001 Rmu_sc0014992.1_g000001
rosa_roxburghii	Rroxscaffold_1G00025050
rosa_rugosa	Rorug05G0292100 Rorug05G0292200
rosa_samantha	Rh5AG361900 Rh5BG373500 Rh5CG395200 Rh5DG386700
rosa_wichuraiana	Rw5G034030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	4
AccI	GTMKAC	1 cut(s)	859
AciI	CCGC	2 cut(s)	326, 452
AclWI	GGATC	2 cut(s)	200, 236
AcoI	YGGCCR	1 cut(s)	816
AcsI	RAATTY	2 cut(s)	173, 427
AcuI	CTGAAG	3 cut(s)	231, 258, 522
AfaI	GTAC	1 cut(s)	36
AfiI	CCNNNNNNNGG	4 cut(s)	361, 586, 1023, 1027
AgsI	TTSAA	7 cut(s)	143, 482, 529, 535, 545, 557, 716
AjnI	CCWGG	3 cut(s)	7, 834, 904
AluBI	AGCT	2 cut(s)	139, 226
AluI	AGCT	2 cut(s)	139, 226
Alw26I	GTCTC	2 cut(s)	194, 894
AlwI	GGATC	2 cut(s)	200, 236
AlwNI	CAGNNNCTG	1 cut(s)	203
AoxI	GGCC	1 cut(s)	816
ApeKI	GCWGC	2 cut(s)	322, 680
ApoI	RAATTY	2 cut(s)	173, 427
AseI	ATTAAT	1 cut(s)	288
Asp700I	GAANNNNTTC	2 cut(s)	98, 177
AspLEI	GCGC	1 cut(s)	763
AspS9I	GGNCC	3 cut(s)	110, 352, 1030
AsuHPI	GGTGA	1 cut(s)	533
AvaII	GGWCC	3 cut(s)	110, 352, 1030
BalI	TGGCCA	1 cut(s)	818
BanI	GGYRCC	1 cut(s)	4
BbsI	GAAGAC	2 cut(s)	219, 986
BbvI	GCAGC	2 cut(s)	334, 667
BccI	CCATC	4 cut(s)	226, 332, 772, 909
BceAI	ACGGC	1 cut(s)	985
BcgI	CGANNNNNNTGC	2 cut(s)	777, 811
BciT130I	CCWGG	3 cut(s)	9, 836, 906
BciVI	GTATCC	1 cut(s)	114
BcoDI	GTCTC	2 cut(s)	194, 894
BfaI	CTAG	2 cut(s)	581, 986
BfmI	CTRYAG	1 cut(s)	786
BfuI	GTATCC	1 cut(s)	114
BisI	GCNGC	3 cut(s)	323, 326, 681
BlpI	GCTNAGC	2 cut(s)	135, 690
BlsI	GCNGC	3 cut(s)	324, 327, 682
Bme1390I	CCNGG	3 cut(s)	9, 836, 906
Bme18I	GGWCC	3 cut(s)	110, 352, 1030
BmgT120I	GGNCC	3 cut(s)	110, 352, 1030
BmiI	GGNNCC	3 cut(s)	6, 195, 354
BmrFI	CCNGG	3 cut(s)	9, 836, 906
BmsI	GCATC	3 cut(s)	403, 426, 692
BpiI	GAAGAC	2 cut(s)	219, 986
BpmI	CTGGAG	2 cut(s)	153, 914
Bpu1102I	GCTNAGC	2 cut(s)	135, 690
BsaJI	CCNNGG	2 cut(s)	379, 835
BsaWI	WCCGGW	1 cut(s)	1020
Bsc4I	CCNNNNNNNGG	4 cut(s)	361, 586, 1023, 1027
Bse118I	RCCGGY	1 cut(s)	518
Bse1I	ACTGG	2 cut(s)	152, 271
Bse3DI	GCAATG	2 cut(s)	953, 981
BseBI	CCWGG	3 cut(s)	9, 836, 906
BseDI	CCNNGG	2 cut(s)	379, 835
BseGI	GGATG	7 cut(s)	96, 166, 441, 610, 727, 757, 901
BseLI	CCNNNNNNNGG	4 cut(s)	361, 586, 1023, 1027
BseMI	GCAATG	2 cut(s)	953, 981
BseMII	CTCAG	3 cut(s)	107, 126, 561
BseNI	ACTGG	2 cut(s)	152, 271
BseRI	GAGGAG	3 cut(s)	623, 634, 647
BseXI	GCAGC	2 cut(s)	334, 667
BseYI	CCCAGC	1 cut(s)	996
BshFI	GGCC	1 cut(s)	818
BshNI	GGYRCC	1 cut(s)	4
BsiSI	CCGG	2 cut(s)	519, 1021
BslI	CCNNNNNNNGG	4 cut(s)	361, 586, 1023, 1027
BsmAI	GTCTC	2 cut(s)	194, 894
BsmBI	CGTCTC	1 cut(s)	894
BsmI	GAATGC	1 cut(s)	960
BsnI	GGCC	1 cut(s)	818
Bsp143I	GATC	3 cut(s)	205, 241, 790
Bsp1720I	GCTNAGC	2 cut(s)	135, 690
BspACI	CCGC	2 cut(s)	326, 452
BspANI	GGCC	1 cut(s)	818
BspCNI	CTCAG	3 cut(s)	108, 127, 562
BspLI	GGNNCC	3 cut(s)	6, 195, 354
BspMAI	CTGCAG	1 cut(s)	790
BspPI	GGATC	2 cut(s)	200, 236
BspT107I	GGYRCC	1 cut(s)	4
BsrDI	GCAATG	2 cut(s)	953, 981
BsrFI	RCCGGY	1 cut(s)	518
BsrI	ACTGG	2 cut(s)	152, 271
BssAI	RCCGGY	1 cut(s)	518
BssECI	CCNNGG	2 cut(s)	379, 835
BssMI	GATC	3 cut(s)	205, 241, 790
BssT1I	CCWWGG	1 cut(s)	379
Bst2UI	CCWGG	3 cut(s)	9, 836, 906
Bst6I	CTCTTC	6 cut(s)	339, 498, 503, 579, 711, 726
BstC8I	GCNNGC	3 cut(s)	132, 466, 470
BstDEI	CTNAG	5 cut(s)	116, 135, 570, 690, 709
BstENI	CCTNNNNNAGG	1 cut(s)	584
BstF5I	GGATG	7 cut(s)	96, 166, 441, 610, 727, 757, 901
BstHHI	GCGC	1 cut(s)	763
BstKTI	GATC	3 cut(s)	208, 244, 793
BstMAI	GTCTC	2 cut(s)	194, 894
BstMBI	GATC	3 cut(s)	205, 241, 790
BstMWI	GCNNNNNNNGC	2 cut(s)	136, 686
BstNI	CCWGG	3 cut(s)	9, 836, 906
BstNSI	RCATGY	1 cut(s)	468
BstSCI	CCNGG	3 cut(s)	7, 834, 904
BstSFI	CTRYAG	1 cut(s)	786
BstV1I	GCAGC	2 cut(s)	334, 667
BstV2I	GAAGAC	2 cut(s)	219, 986
BstX2I	RGATCY	1 cut(s)	241
BstYI	RGATCY	1 cut(s)	241
BsuI	GTATCC	1 cut(s)	114
BsuRI	GGCC	1 cut(s)	818
BtsCI	GGATG	7 cut(s)	96, 166, 441, 610, 727, 757, 901
BtsIMutI	CAGTG	1 cut(s)	113
Cac8I	GCNNGC	3 cut(s)	132, 466, 470
CaiI	CAGNNNCTG	1 cut(s)	203
CfoI	GCGC	1 cut(s)	763
Cfr10I	RCCGGY	1 cut(s)	518
Cfr13I	GGNCC	3 cut(s)	110, 352, 1030
CseI	GACGC	1 cut(s)	863
Csp6I	GTAC	1 cut(s)	35
CspCI	CAANNNNNGTGG	2 cut(s)	345, 380
CviAII	CATG	4 cut(s)	62, 127, 465, 971
CviQI	GTAC	1 cut(s)	35
DdeI	CTNAG	5 cut(s)	116, 135, 570, 690, 709
DpnI	GATC	3 cut(s)	207, 243, 792
DpnII	GATC	3 cut(s)	205, 241, 790
EaeI	YGGCCR	1 cut(s)	816
Eam1104I	CTCTTC	6 cut(s)	339, 498, 503, 579, 711, 726
EarI	CTCTTC	6 cut(s)	339, 498, 503, 579, 711, 726
Eco130I	CCWWGG	1 cut(s)	379
Eco47I	GGWCC	3 cut(s)	110, 352, 1030
Eco57I	CTGAAG	3 cut(s)	231, 258, 522
EcoNI	CCTNNNNNAGG	1 cut(s)	584
EcoRII	CCWGG	3 cut(s)	7, 834, 904
EcoT14I	CCWWGG	1 cut(s)	379
EcoT22I	ATGCAT	1 cut(s)	466
ErhI	CCWWGG	1 cut(s)	379
Esp3I	CGTCTC	1 cut(s)	894
FaeI	CATG	4 cut(s)	65, 130, 468, 974
FatI	CATG	4 cut(s)	61, 126, 464, 970
FauNDI	CATATG	1 cut(s)	55
FblI	GTMKAC	1 cut(s)	859
Fnu4HI	GCNGC	3 cut(s)	323, 326, 681
FokI	GGATG	7 cut(s)	103, 173, 448, 617, 734, 764, 888
Fsp4HI	GCNGC	3 cut(s)	323, 326, 681
FspBI	CTAG	2 cut(s)	581, 986
GlaI	GCGC	1 cut(s)	762
GluI	GCNGC	3 cut(s)	323, 326, 681
GsaI	CCCAGC	1 cut(s)	1000
GsuI	CTGGAG	2 cut(s)	153, 914
HaeIII	GGCC	1 cut(s)	818
HapII	CCGG	2 cut(s)	519, 1021
HgaI	GACGC	1 cut(s)	863
HhaI	GCGC	1 cut(s)	763
Hin1II	CATG	4 cut(s)	65, 130, 468, 974
Hin6I	GCGC	1 cut(s)	761
HinP1I	GCGC	1 cut(s)	761
HincII	GTYRAC	1 cut(s)	187
HindII	GTYRAC	1 cut(s)	187
HindIII	AAGCTT	1 cut(s)	224
HinfI	GANTC	1 cut(s)	982
HpaI	GTTAAC	1 cut(s)	187
HpaII	CCGG	2 cut(s)	519, 1021
HphI	GGTGA	1 cut(s)	533
Hpy166II	GTNNAC	4 cut(s)	113, 187, 352, 860
Hpy188I	TCNGA	1 cut(s)	333
Hpy188III	TCNNGA	3 cut(s)	170, 209, 893
Hpy8I	GTNNAC	4 cut(s)	113, 187, 352, 860
HpyAV	CCTTC	3 cut(s)	383, 634, 816
HpyF10VI	GCNNNNNNNGC	2 cut(s)	136, 686
HpyF3I	CTNAG	5 cut(s)	116, 135, 570, 690, 709
Hsp92II	CATG	4 cut(s)	65, 130, 468, 974
HspAI	GCGC	1 cut(s)	761
KspAI	GTTAAC	1 cut(s)	187
Kzo9I	GATC	3 cut(s)	205, 241, 790
Lsp1109I	GCAGC	2 cut(s)	334, 667
LweI	GCATC	3 cut(s)	403, 426, 692
MaeI	CTAG	2 cut(s)	581, 986
MaeIII	GTNAC	1 cut(s)	908
MalI	GATC	3 cut(s)	207, 243, 792
MboI	GATC	3 cut(s)	205, 241, 790
MflI	RGATCY	1 cut(s)	241
MlsI	TGGCCA	1 cut(s)	818
MluCI	AATT	4 cut(s)	23, 173, 427, 591
MluNI	TGGCCA	1 cut(s)	818
MlyI	GAGTC	1 cut(s)	976
Mox20I	TGGCCA	1 cut(s)	818
Mph1103I	ATGCAT	1 cut(s)	466
MroXI	GAANNNNTTC	2 cut(s)	98, 177
MscI	TGGCCA	1 cut(s)	818
MseI	TTAA	3 cut(s)	186, 288, 614
Msp20I	TGGCCA	1 cut(s)	818
MspA1I	CMGCKG	1 cut(s)	452
MspI	CCGG	2 cut(s)	519, 1021
MspR9I	CCNGG	3 cut(s)	9, 836, 906
Mva1269I	GAATGC	1 cut(s)	960
MvaI	CCWGG	3 cut(s)	9, 836, 906
MwoI	GCNNNNNNNGC	2 cut(s)	136, 686
NdeI	CATATG	1 cut(s)	55
NdeII	GATC	3 cut(s)	205, 241, 790
NlaIII	CATG	4 cut(s)	65, 130, 468, 974
NlaIV	GGNNCC	3 cut(s)	6, 195, 354
NsiI	ATGCAT	1 cut(s)	466
NspI	RCATGY	1 cut(s)	468
PaeI	GCATGC	1 cut(s)	468
PctI	GAATGC	1 cut(s)	960
PdmI	GAANNNNTTC	2 cut(s)	98, 177
PkrI	GCNGC	3 cut(s)	324, 327, 682
PleI	GAGTC	1 cut(s)	976
PpsI	GAGTC	1 cut(s)	976
PshBI	ATTAAT	1 cut(s)	288
Psp6I	CCWGG	3 cut(s)	7, 834, 904
PspFI	CCCAGC	1 cut(s)	996
PspGI	CCWGG	3 cut(s)	7, 834, 904
PspN4I	GGNNCC	3 cut(s)	6, 195, 354
PspPI	GGNCC	3 cut(s)	110, 352, 1030
PstI	CTGCAG	1 cut(s)	790
PstNI	CAGNNNCTG	1 cut(s)	203
PsuI	RGATCY	1 cut(s)	241
RsaI	GTAC	1 cut(s)	36
RsaNI	GTAC	1 cut(s)	35
SaqAI	TTAA	3 cut(s)	186, 288, 614
SatI	GCNGC	3 cut(s)	323, 326, 681
Sau3AI	GATC	3 cut(s)	205, 241, 790
Sau96I	GGNCC	3 cut(s)	110, 352, 1030
SchI	GAGTC	1 cut(s)	976
ScrFI	CCNGG	3 cut(s)	9, 836, 906
SfaNI	GCATC	3 cut(s)	403, 426, 692
SfcI	CTRYAG	1 cut(s)	786
SinI	GGWCC	3 cut(s)	110, 352, 1030
SphI	GCATGC	1 cut(s)	468
Sse9I	AATT	4 cut(s)	23, 173, 427, 591
SsiI	CCGC	2 cut(s)	326, 452
SspMI	CTAG	2 cut(s)	581, 986
StyD4I	CCNGG	3 cut(s)	7, 834, 904
StyI	CCWWGG	1 cut(s)	379
TaqI	TCGA	5 cut(s)	69, 221, 645, 797, 925
TasI	AATT	4 cut(s)	23, 173, 427, 591
TauI	GCSGC	1 cut(s)	328
Tru1I	TTAA	3 cut(s)	186, 288, 614
Tru9I	TTAA	3 cut(s)	186, 288, 614
TscAI	CASTG	1 cut(s)	120
TseI	GCWGC	2 cut(s)	322, 680
TspRI	CASTG	1 cut(s)	120
VpaK11BI	GGWCC	3 cut(s)	110, 352, 1030
VspI	ATTAAT	1 cut(s)	288
XagI	CCTNNNNNAGG	1 cut(s)	584
XapI	RAATTY	2 cut(s)	173, 427
XceI	RCATGY	1 cut(s)	468
XmiI	GTMKAC	1 cut(s)	859
XmnI	GAANNNNTTC	2 cut(s)	98, 177
XspI	CTAG	2 cut(s)	581, 986
Zsp2I	ATGCAT	1 cut(s)	466

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.