Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014992.1

Orthogroup ID

OG0006193

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1222

Gene Structure 1221 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014992.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 748 bp

atgattattggaatttttgtttcctttatagtggttagggaagagaggggcccgtatagtgatcctcaacatccctatttctatgaagatgaagatgtttggatggcaccaggcttcataaaccaattctatgaagtccctgattactggaaaacatatgtgcatgaggttgatgaggaaagggaaatgtggttgaactccttctataaagctccactgagaatacctatgccttctgagcttgaatactggtggtcaaaggaggagactccagaatttattgttgttaacaaggaaccagagcctgatcctgaagacccatcaaagcttatatatactgaagatccacttatccttcacacacgaactggacggttaatcaactatatcgaagatgaaaaacatggggttcgcctattttggcagccgcctctcaaagatggggaagaggtggacccagaaaaggcggagctccttccgcttggttatgacgagttctatggacaaaacattggtgacaagaaacaaaactttttgatgcgacttatatcagcagtggaaaatacatgcaagcctgtttttgataaactagagaaatggactgaagagaagaggaaagcaagtgagatgaagatgaaattgattgaaaaagaacttgaactgatagaggctgaactgtgcctggaagaggtaattgaggatatggatgaggagttgaagatgagagagaaagaggaggagaagaatg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006605 GO:0006810 GO:0006886 GO:0006996 GO:0007275 GO:0008104 GO:0008150 GO:0008565 GO:0009507 GO:0009526 GO:0009528 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009657 GO:0009658 GO:0009706 GO:0009790 GO:0009791 GO:0009793 GO:0009941 GO:0009987 GO:0010154 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0017038 GO:0019866 GO:0022414 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0033036 GO:0033365 GO:0034357 GO:0034613 GO:0042170 GO:0042651 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055035 GO:0055085 GO:0061458 GO:0065002 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072596 GO:0072598

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MORN

Protein Analysis

249

Amino Acids

29.93

Weight (kDa)

4.5

Isoelectric Point (pI)

55.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006193)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22640 AT5G22640 AT5G22640
fragaria_vesca	FvH4_3g29910 FvH4_3g29910 FvH4_3g29910
malus_domestica	MD03G1134600.v1.1 MD11G1157100.v1.1
prunus_persica	Prupe.6G118900_v2.0.a1 Prupe.6G118900_v2.0.a1
pyrus_communis	pycom03g09060 pycom11g12730
rosa_chinensis	RchiOBHm_Chr5g0055251
rosa_laevigata	RLG00000034978
rosa_multiflora	Rmu_co8251283.1_g000001 Rmu_co8349015.1_g000001 Rmu_sc0003110.1_g000015 Rmu_sc0013362.1_g000001 Rmu_sc0014992.1_g000001
rosa_roxburghii	Rroxscaffold_1G00025050
rosa_rugosa	Rorug05G0292100 Rorug05G0292200
rosa_samantha	Rh5AG361900 Rh5BG373500 Rh5CG395200 Rh5DG386700
rosa_wichuraiana	Rw5G034030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	106
AciI	CCGC	3 cut(s)	428, 467, 479
AclWI	GGATC	3 cut(s)	56, 302, 338
AcsI	RAATTY	2 cut(s)	12, 275
AcuI	CTGAAG	3 cut(s)	333, 360, 624
AfiI	CCNNNNNNNGG	2 cut(s)	463, 688
AgsI	TTSAA	5 cut(s)	196, 245, 647, 659, 718
AjnI	CCWGG	2 cut(s)	109, 681
AluBI	AGCT	4 cut(s)	212, 241, 328, 472
AluI	AGCT	4 cut(s)	212, 241, 328, 472
Alw21I	GWGCWC	1 cut(s)	474
Alw26I	GTCTC	1 cut(s)	260
AlwI	GGATC	3 cut(s)	56, 302, 338
AlwNI	CAGNNNCTG	1 cut(s)	305
AoxI	GGCC	1 cut(s)	49
ApaI	GGGCCC	1 cut(s)	53
ApeKI	GCWGC	1 cut(s)	424
ApoI	RAATTY	2 cut(s)	12, 275
Asp700I	GAANNNNTTC	1 cut(s)	200
AspS9I	GGNCC	3 cut(s)	49, 50, 454
AsuHPI	GGTGA	1 cut(s)	527
AvaII	GGWCC	1 cut(s)	454
BaeGI	GKGCMC	1 cut(s)	53
BanI	GGYRCC	1 cut(s)	106
BanII	GRGCYC	2 cut(s)	53, 474
BbsI	GAAGAC	1 cut(s)	321
Bbv12I	GWGCWC	1 cut(s)	474
BbvI	GCAGC	1 cut(s)	436
BccI	CCATC	3 cut(s)	97, 328, 434
BciT130I	CCWGG	2 cut(s)	111, 683
BcoDI	GTCTC	1 cut(s)	260
BfaI	CTAG	1 cut(s)	590
BisI	GCNGC	2 cut(s)	425, 428
BlsI	GCNGC	2 cut(s)	426, 429
Bme1390I	CCNGG	2 cut(s)	111, 683
Bme18I	GGWCC	1 cut(s)	454
BmgT120I	GGNCC	3 cut(s)	49, 50, 454
BmiI	GGNNCC	5 cut(s)	50, 51, 108, 297, 456
BmrFI	CCNGG	2 cut(s)	111, 683
BmsI	GCATC	1 cut(s)	528
BpiI	GAAGAC	1 cut(s)	321
BpmI	CTGGAG	1 cut(s)	255
Bsc4I	CCNNNNNNNGG	2 cut(s)	463, 688
Bse1I	ACTGG	3 cut(s)	152, 254, 373
BseBI	CCWGG	2 cut(s)	111, 683
BseGI	GGATG	3 cut(s)	70, 108, 712
BseLI	CCNNNNNNNGG	2 cut(s)	463, 688
BseMII	CTCAG	2 cut(s)	209, 228
BseNI	ACTGG	3 cut(s)	152, 254, 373
BseRI	GAGGAG	2 cut(s)	278, 725
BseSI	GKGCMC	1 cut(s)	53
BseXI	GCAGC	1 cut(s)	436
BshFI	GGCC	1 cut(s)	51
BshNI	GGYRCC	1 cut(s)	106
BsiHKAI	GWGCWC	1 cut(s)	474
BslFI	GGGAC	1 cut(s)	122
BslI	CCNNNNNNNGG	2 cut(s)	463, 688
BsmAI	GTCTC	1 cut(s)	260
BsmFI	GGGAC	1 cut(s)	122
BsnI	GGCC	1 cut(s)	51
Bsp120I	GGGCCC	1 cut(s)	49
Bsp1286I	GDGCHC	2 cut(s)	53, 474
Bsp143I	GATC	3 cut(s)	61, 307, 343
BspACI	CCGC	3 cut(s)	428, 467, 479
BspANI	GGCC	1 cut(s)	51
BspCNI	CTCAG	2 cut(s)	210, 229
BspLI	GGNNCC	5 cut(s)	50, 51, 108, 297, 456
BspPI	GGATC	3 cut(s)	56, 302, 338
BspT107I	GGYRCC	1 cut(s)	106
BsrI	ACTGG	3 cut(s)	152, 254, 373
BssMI	GATC	3 cut(s)	61, 307, 343
Bst2UI	CCWGG	2 cut(s)	111, 683
Bst4CI	ACNGT	2 cut(s)	375, 678
Bst6I	CTCTTC	5 cut(s)	36, 441, 600, 605, 681
BstC8I	GCNNGC	1 cut(s)	572
BstDEI	CTNAG	2 cut(s)	218, 237
BstENI	CCTNNNNNAGG	1 cut(s)	686
BstF5I	GGATG	3 cut(s)	70, 108, 712
BstKTI	GATC	3 cut(s)	64, 310, 346
BstMAI	GTCTC	1 cut(s)	260
BstMBI	GATC	3 cut(s)	61, 307, 343
BstMWI	GCNNNNNNNGC	2 cut(s)	238, 478
BstNI	CCWGG	2 cut(s)	111, 683
BstNSI	RCATGY	1 cut(s)	570
BstSCI	CCNGG	2 cut(s)	109, 681
BstSLI	GKGCMC	1 cut(s)	53
BstV1I	GCAGC	1 cut(s)	436
BstV2I	GAAGAC	1 cut(s)	321
BstX2I	RGATCY	1 cut(s)	343
BstYI	RGATCY	1 cut(s)	343
BsuRI	GGCC	1 cut(s)	51
BtsCI	GGATG	3 cut(s)	70, 108, 712
BtsI	GCAGTG	1 cut(s)	561
BtsIMutI	CAGTG	2 cut(s)	215, 561
Cac8I	GCNNGC	1 cut(s)	572
CaiI	CAGNNNCTG	1 cut(s)	305
Cfr13I	GGNCC	3 cut(s)	49, 50, 454
CviAII	CATG	3 cut(s)	164, 404, 567
DdeI	CTNAG	2 cut(s)	218, 237
DpnI	GATC	3 cut(s)	63, 309, 345
DpnII	GATC	3 cut(s)	61, 307, 343
Eam1104I	CTCTTC	5 cut(s)	36, 441, 600, 605, 681
EarI	CTCTTC	5 cut(s)	36, 441, 600, 605, 681
EciI	GGCGGA	1 cut(s)	482
Ecl136II	GAGCTC	1 cut(s)	472
Eco24I	GRGCYC	2 cut(s)	53, 474
Eco47I	GGWCC	1 cut(s)	454
Eco53kI	GAGCTC	1 cut(s)	472
Eco57I	CTGAAG	3 cut(s)	333, 360, 624
EcoICRI	GAGCTC	1 cut(s)	472
EcoNI	CCTNNNNNAGG	1 cut(s)	686
EcoO109I	RGGNCCY	1 cut(s)	49
EcoRII	CCWGG	2 cut(s)	109, 681
EcoT38I	GRGCYC	2 cut(s)	53, 474
FaeI	CATG	3 cut(s)	167, 407, 570
FalI	AAGNNNNNCTT	2 cut(s)	333, 365
FaqI	GGGAC	1 cut(s)	122
FatI	CATG	3 cut(s)	163, 403, 566
FauNDI	CATATG	1 cut(s)	157
Fnu4HI	GCNGC	2 cut(s)	425, 428
FokI	GGATG	3 cut(s)	57, 115, 719
FriOI	GRGCYC	2 cut(s)	53, 474
Fsp4HI	GCNGC	2 cut(s)	425, 428
FspBI	CTAG	1 cut(s)	590
GluI	GCNGC	2 cut(s)	425, 428
GsuI	CTGGAG	1 cut(s)	255
HaeIII	GGCC	1 cut(s)	51
Hin1II	CATG	3 cut(s)	167, 407, 570
HincII	GTYRAC	1 cut(s)	289
HindII	GTYRAC	1 cut(s)	289
HindIII	AAGCTT	1 cut(s)	326
HinfI	GANTC	1 cut(s)	268
HpaI	GTTAAC	1 cut(s)	289
HphI	GGTGA	1 cut(s)	527
Hpy166II	GTNNAC	2 cut(s)	289, 454
Hpy188I	TCNGA	1 cut(s)	238
Hpy188III	TCNNGA	2 cut(s)	272, 311
Hpy8I	GTNNAC	2 cut(s)	289, 454
HpyAV	CCTTC	4 cut(s)	211, 243, 365, 485
HpyCH4III	ACNGT	2 cut(s)	375, 678
HpyCH4V	TGCA	2 cut(s)	163, 570
HpyF10VI	GCNNNNNNNGC	2 cut(s)	238, 478
HpyF3I	CTNAG	2 cut(s)	218, 237
Hsp92II	CATG	3 cut(s)	167, 407, 570
KspAI	GTTAAC	1 cut(s)	289
Kzo9I	GATC	3 cut(s)	61, 307, 343
LmnI	GCTCC	3 cut(s)	217, 469, 477
Lsp1109I	GCAGC	1 cut(s)	436
LweI	GCATC	1 cut(s)	528
MaeI	CTAG	1 cut(s)	590
MaeIII	GTNAC	1 cut(s)	515
MalI	GATC	3 cut(s)	63, 309, 345
MboI	GATC	3 cut(s)	61, 307, 343
MflI	RGATCY	1 cut(s)	343
MhlI	GDGCHC	2 cut(s)	53, 474
MluCI	AATT	5 cut(s)	12, 125, 275, 638, 693
MlyI	GAGTC	1 cut(s)	262
MroXI	GAANNNNTTC	1 cut(s)	200
MseI	TTAA	2 cut(s)	288, 377
MspR9I	CCNGG	2 cut(s)	111, 683
MvaI	CCWGG	2 cut(s)	111, 683
MwoI	GCNNNNNNNGC	2 cut(s)	238, 478
NdeI	CATATG	1 cut(s)	157
NdeII	GATC	3 cut(s)	61, 307, 343
NlaIII	CATG	3 cut(s)	167, 407, 570
NlaIV	GGNNCC	5 cut(s)	50, 51, 108, 297, 456
NmuCI	GTSAC	1 cut(s)	515
NspI	RCATGY	1 cut(s)	570
PdmI	GAANNNNTTC	1 cut(s)	200
PkrI	GCNGC	2 cut(s)	426, 429
PleI	GAGTC	1 cut(s)	262
PpsI	GAGTC	1 cut(s)	262
Psp124BI	GAGCTC	1 cut(s)	474
Psp6I	CCWGG	2 cut(s)	109, 681
PspGI	CCWGG	2 cut(s)	109, 681
PspN4I	GGNNCC	5 cut(s)	50, 51, 108, 297, 456
PspOMI	GGGCCC	1 cut(s)	49
PspPI	GGNCC	3 cut(s)	49, 50, 454
PstNI	CAGNNNCTG	1 cut(s)	305
PsuI	RGATCY	1 cut(s)	343
SacI	GAGCTC	1 cut(s)	474
SaqAI	TTAA	2 cut(s)	288, 377
SatI	GCNGC	2 cut(s)	425, 428
Sau3AI	GATC	3 cut(s)	61, 307, 343
Sau96I	GGNCC	3 cut(s)	49, 50, 454
SchI	GAGTC	1 cut(s)	262
ScrFI	CCNGG	2 cut(s)	111, 683
SduI	GDGCHC	2 cut(s)	53, 474
SetI	ASST	8 cut(s)	171, 214, 229, 243, 330, 453, 474, 693
SfaNI	GCATC	1 cut(s)	528
SinI	GGWCC	1 cut(s)	454
Sse9I	AATT	5 cut(s)	12, 125, 275, 638, 693
SsiI	CCGC	3 cut(s)	428, 467, 479
SspMI	CTAG	1 cut(s)	590
SstI	GAGCTC	1 cut(s)	474
StyD4I	CCNGG	2 cut(s)	109, 681
TaaI	ACNGT	2 cut(s)	375, 678
TaqI	TCGA	1 cut(s)	390
TasI	AATT	5 cut(s)	12, 125, 275, 638, 693
TauI	GCSGC	1 cut(s)	430
Tru1I	TTAA	2 cut(s)	288, 377
Tru9I	TTAA	2 cut(s)	288, 377
TscAI	CASTG	2 cut(s)	222, 561
TseFI	GTSAC	1 cut(s)	515
TseI	GCWGC	1 cut(s)	424
Tsp45I	GTSAC	1 cut(s)	515
TspDTI	ATGAA	7 cut(s)	99, 105, 106, 147, 411, 644, 650
TspRI	CASTG	2 cut(s)	222, 561
VpaK11BI	GGWCC	1 cut(s)	454
XagI	CCTNNNNNAGG	1 cut(s)	686
XapI	RAATTY	2 cut(s)	12, 275
XceI	RCATGY	1 cut(s)	570
XmnI	GAANNNNTTC	1 cut(s)	200
XspI	CTAG	1 cut(s)	590

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.