Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0006193

Physical Location & Seq

Genomic Coordinates Reverse (-)

60912583 .. 60920593

Gene Structure 8011 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG361900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2595 bp

ATGCCAGACCAAGACTCCCCAAACCCCACTGAATCCCAGCTCACCGCCCAAGAGCCCGACCCGGACGGCCTCTCCTCATCCGACTCCGAGCCCGACTACGATTCCGACGAGTCCTCCGTCTACGAAGGCGAGGGCGGTAACGGCGGTAATGGTGAAGTCGAAGAAGCGCTCAATTTACTCCGGCCCGGCGAGGACATACCGGAGGACGAGAACACTCCCGATGTGAATGTGAAGCTGTTCAACCAGGTGTTACAGGGGAAGAGAGTGAGGAGGAGGCAGGAGGAGGAGGACAGGGGGTATGTGTTTTACGAGGACCTGTTTGATTTCCCGGAGGACCCAGAGAAATGGCGGGAGGAGGACTTGAAGGAGCTCTGGGGTGATGCGCCCTTGGATATGACCAAACCCGGTTGGGACCCGGTTTGGGCTGATGAGGAGGAGTGGGAGATTGTTAAGGATGAGATTAAGGCCGGCAATGACCCGCCCATTGCTCCCTTTTATGTTCCCTACCGGAAGCCTTATCCGGCCATACCTGAAGATCATTATGACATTTCCAATCCCAAGGCTGTGATTGAAGAGTTGGATAGGATTGAGGAGTTTCTCAGATGGGTCAGCTATGTTTTCCCTGACGGCAGCTCGTATGAGGGCACCGTGTGGGATGACTTGGCTCATGGCAAAGGAGTCTACGTTGCTGAGCAGGGACTCGTCAGGTATGAAGGTGAATGGCTTCAAAACAACATGGAGGGTCATGGGGTTGTTGAAGTTGACATACCTGACATAGAGCCTATTCCAGGTTCCAAGCTTGAAGCACAGATGCGTGCTGAAGGGCACATAATATCAAGAGATTATATGACCCCGGAAGACAAAGAATGGTTGGAGATGGATATTCAAGACAGCATTGATCTAGCAGGGGGGCGGTCTGAAATTCCTTTTTATGAAAAAGATGAATGGATCAGACATTTTGGGAGGAAACCCGAGAAAGGTCGATATCGCTATGCAGGTCAGTGGAAACATGCCAGAATGCATGGATGTGGAGTATATGAAGTCAACGAGCGTACCATATATGGGAGGTTCTACTTTGGCGAGCTAGTGGAGGATGATACTGGTTGTGATGAGGATGTATCAGCGCTGCATGCGGGTATTGCAGAAGTGGCTGCTGCTAAGGCTCGGATGTTTGTGAACAAGCCTGATGGAATGGTTAGGGAAGAGAGGGGCCCATATAGTGATCCTCAACATCCCTATTTCTATGAAGATGAAGATGTTTGGATGGCACCAGGCTTCATAAACCAATTCTATGAAGTCCCTGATTACTGGAAAACATATGTGCACGAGGTTGATGAGGAAAGGGAAATGTGGTTGAACTCCTTCTATAAAGCTCCACTGAGAATACCTATGCCTTCTGAGCTTGAATACTGGTGGTCAAAGGAGGAGACTCCAGAATTTATTGTTGTTAACAAGGAACCAGAGCCTGATCCTGAAGACCCATCAAAGCTTATATATACTGAAGATCCACTTATCCTTCACACACGAACTGGACGATTAATCAACTATATCGAAGATGAAAAACATGGGGTTCGCCTATTTTGGCAGCCGCCTCTCAAAGATGGGGAAGAGGTGGACCCAGAAAAGGCGGAGCTCCTTCCGCTTGGTTATGACGAGTTCTATGGACAAAACATTGGTGACAAGAAACAAAACTTTTTGATGCGACTTATATCAGCAGTGGAAAATACATGCAAGCCTGTTTTTGATAAACTAGAGAAATGGACTGAAGAGAAGAGGAAAGCAAGTGAGATGAAGATGAAATTGATTGAAAAAGAACTTGAACTGATAGAGGCTGAACTGTGCCTGGAAGAGGTAATTGAGGATATGGATGAGGAGTTGAAGATGAGAGAGAAAGAGGAGGAGAAGAATGTGGAAACGGTCTCGCCGGATGAAGAAGATACTTCTCCATTGGCTAACCAAGATGAGAAATCAATTGAAGAGGATGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGATGAAGATGATGCTGTGCCATCAAGTTTTGGGTCTGTAAGAGGAGATCAGGATGGTACCAAGAATGGCCAGAAGGGTAACAAACCTGGGCGATCTCCATTTTCCACATCCTCATTGGCATTCGCTTCAAGTAGCCTCGTCTCTGGGATTCCATCCAGGCTGCAACAGTCGTTTTTAGCATGGAAAAATAGTAGAGCAATACCAAAGACAGCTACTTCTTCATGCAATGAAGCCTCTTGTTGCAACTTGAAAACAGTTGATTCAGTGAGTTTCCCTCCGTTGGTTGTCCCAAAAGTAAACTTCAAAGCCCTAAAGCAAAGACACTTGAACTTCCAAGCCAAAATCTACTCAAATAGGAGGCTATCTCAGTTGCGGTCTTCATCTCAAATAAGCTCACATCACTCAGCTTCTATGAACACCAGAATAAGCCCAGGAGAAATGAGATTGAAAAACAATAGTTGGCTGCATGCATCACCAGAGAGGGAGTCGGACAGTATATTGTCTTTGCACACACCATGGTATCATTTGGAGCCAAATGAAGAAACCATACGTGGTGAGCCACTTCCTCTCCTTTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006605 GO:0006810 GO:0006886 GO:0006996 GO:0007275 GO:0008104 GO:0008150 GO:0008565 GO:0009507 GO:0009526 GO:0009528 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009657 GO:0009658 GO:0009706 GO:0009790 GO:0009791 GO:0009793 GO:0009941 GO:0009987 GO:0010154 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0017038 GO:0019866 GO:0022414 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0033036 GO:0033365 GO:0034357 GO:0034613 GO:0042170 GO:0042651 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055035 GO:0055085 GO:0061458 GO:0065002 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072596 GO:0072598

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MORN

Protein Analysis

864

Amino Acids

99.54

Weight (kDa)

4.47

Isoelectric Point (pI)

60.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006193)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22640 AT5G22640 AT5G22640
fragaria_vesca	FvH4_3g29910 FvH4_3g29910 FvH4_3g29910
malus_domestica	MD03G1134600.v1.1 MD11G1157100.v1.1
prunus_persica	Prupe.6G118900_v2.0.a1 Prupe.6G118900_v2.0.a1
pyrus_communis	pycom03g09060 pycom11g12730
rosa_chinensis	RchiOBHm_Chr5g0055251
rosa_laevigata	RLG00000034978
rosa_multiflora	Rmu_co8251283.1_g000001 Rmu_co8349015.1_g000001 Rmu_sc0003110.1_g000015 Rmu_sc0013362.1_g000001 Rmu_sc0014992.1_g000001
rosa_roxburghii	Rroxscaffold_1G00025050
rosa_rugosa	Rorug05G0292100 Rorug05G0292200
rosa_samantha	Rh5AG361900 Rh5BG373500 Rh5CG395200 Rh5DG386700
rosa_wichuraiana	Rw5G034030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	986
Acc65I	GGTACC	1 cut(s)	2072
AccB1I	GGYRCC	3 cut(s)	644, 1267, 2072
AccI	GTMKAC	2 cut(s)	120, 681
AclWI	GGATC	4 cut(s)	956, 1217, 1463, 1499
AcoI	YGGCCR	2 cut(s)	522, 2083
AcsI	RAATTY	2 cut(s)	921, 1436
AcuI	CTGAAG	5 cut(s)	552, 840, 1494, 1521, 1785
AdeI	CACNNNGTG	1 cut(s)	651
AfaI	GTAC	2 cut(s)	1054, 2074
AfeI	AGCGCT	2 cut(s)	168, 1125
AfiI	CCNNNNNNNGG	7 cut(s)	421, 788, 977, 1062, 1624, 1849, 2296
AjnI	CCWGG	7 cut(s)	243, 787, 1270, 1842, 2101, 2171, 2446
Alw21I	GWGCWC	3 cut(s)	372, 1326, 1635
Alw26I	GTCTC	3 cut(s)	1421, 1924, 2161
Alw44I	GTGCAC	1 cut(s)	1322
AlwI	GGATC	4 cut(s)	956, 1217, 1463, 1499
AlwNI	CAGNNNCTG	1 cut(s)	1466
Ama87I	CYCGRG	1 cut(s)	971
Aor51HI	AGCGCT	2 cut(s)	168, 1125
AoxI	GGCC	6 cut(s)	67, 182, 465, 522, 1210, 2083
ApaI	GGGCCC	1 cut(s)	1214
ApaLI	GTGCAC	1 cut(s)	1322
ApeKI	GCWGC	7 cut(s)	630, 1126, 1151, 1154, 1585, 2176, 2479
ApoI	RAATTY	2 cut(s)	921, 1436
AseI	ATTAAT	1 cut(s)	1538
Asp700I	GAANNNNTTC	3 cut(s)	236, 723, 1361
Asp718I	GGTACC	1 cut(s)	2072
AspLEI	GCGC	3 cut(s)	169, 385, 1126
AspS9I	GGNCC	7 cut(s)	183, 313, 334, 412, 1210, 1211, 1615
AsuC2I	CCSGG	6 cut(s)	62, 186, 329, 405, 416, 854
AsuHPI	GGTGA	7 cut(s)	34, 164, 389, 728, 1688, 2481, 2582
AvaI	CYCGRG	1 cut(s)	971
AvaII	GGWCC	4 cut(s)	313, 334, 412, 1615
BaeGI	GKGCMC	4 cut(s)	647, 828, 1214, 1326
BaeI	ACNNNNGTAYC	4 cut(s)	1036, 1069, 2519, 2552
BalI	TGGCCA	1 cut(s)	2085
BanI	GGYRCC	3 cut(s)	644, 1267, 2072
BanII	GRGCYC	5 cut(s)	57, 93, 372, 1214, 1635
BarI	GAAGNNNNNNTAC	4 cut(s)	750, 782, 2547, 2579
BauI	CACGAG	1 cut(s)	1325
BbsI	GAAGAC	3 cut(s)	864, 1482, 2385
Bbv12I	GWGCWC	3 cut(s)	372, 1326, 1635
BbvI	GCAGC	7 cut(s)	642, 1113, 1138, 1141, 1597, 2163, 2466
BccI	CCATC	9 cut(s)	597, 871, 1181, 1258, 1489, 1595, 2044, 2063, 2176
BceAI	ACGGC	3 cut(s)	82, 157, 643
BciT130I	CCWGG	7 cut(s)	245, 789, 1272, 1844, 2103, 2173, 2448
BcnI	CCSGG	6 cut(s)	62, 186, 329, 405, 416, 854
BcoDI	GTCTC	3 cut(s)	1421, 1924, 2161
BfaI	CTAG	3 cut(s)	902, 1085, 1751
BfoI	RGCGCY	2 cut(s)	170, 1127
BfuAI	ACCTGC	1 cut(s)	986
BisI	GCNGC	8 cut(s)	631, 1127, 1152, 1155, 1586, 1589, 2177, 2480
BlpI	GCTNAGC	1 cut(s)	690
BlsI	GCNGC	8 cut(s)	632, 1128, 1153, 1156, 1587, 1590, 2178, 2481
Bme18I	GGWCC	4 cut(s)	313, 334, 412, 1615
BmeT110I	CYCGRG	1 cut(s)	971
BmgT120I	GGNCC	7 cut(s)	183, 313, 334, 412, 1210, 1211, 1615
BmsI	GCATC	5 cut(s)	370, 801, 1689, 2017, 2495
BpiI	GAAGAC	3 cut(s)	864, 1482, 2385
BplI	GAGNNNNNCTC	4 cut(s)	2275, 2307, 2365, 2397
BpmI	CTGGAG	1 cut(s)	1416
Bpu10I	CCTNAGC	1 cut(s)	1158
Bpu1102I	GCTNAGC	1 cut(s)	690
BpuMI	CCSGG	6 cut(s)	62, 186, 329, 405, 416, 854
BsaAI	YACGTR	1 cut(s)	2567
BsaI	GGTCTC	1 cut(s)	1924
BsaJI	CCNNGG	6 cut(s)	387, 558, 852, 2102, 2446, 2531
BsaWI	WCCGGW	2 cut(s)	199, 507
BsaXI	ACNNNNNCTCC	8 cut(s)	29, 56, 86, 98, 128, 669, 699, 2568
Bsc4I	CCNNNNNNNGG	7 cut(s)	421, 788, 977, 1062, 1624, 1849, 2296
Bse118I	RCCGGY	1 cut(s)	467
Bse1I	ACTGG	4 cut(s)	1105, 1313, 1415, 1534
Bse3DI	GCAATG	3 cut(s)	478, 483, 2248
BseBI	CCWGG	7 cut(s)	245, 789, 1272, 1844, 2103, 2173, 2448
BseDI	CCNNGG	6 cut(s)	387, 558, 852, 2102, 2446, 2531
BseLI	CCNNNNNNNGG	7 cut(s)	421, 788, 977, 1062, 1624, 1849, 2296
BseMI	GCAATG	3 cut(s)	478, 483, 2248
BseMII	CTCAG	6 cut(s)	613, 681, 1370, 1389, 2396, 2433
BseNI	ACTGG	4 cut(s)	1105, 1313, 1415, 1534
BseSI	GKGCMC	4 cut(s)	647, 828, 1214, 1326
BseXI	GCAGC	7 cut(s)	642, 1113, 1138, 1141, 1597, 2163, 2466
BseYI	CCCAGC	1 cut(s)	36
BshFI	GGCC	6 cut(s)	69, 184, 467, 524, 1212, 2085
BshNI	GGYRCC	3 cut(s)	644, 1267, 2072
BsiHKAI	GWGCWC	3 cut(s)	372, 1326, 1635
BsiHKCI	CYCGRG	1 cut(s)	971
BslFI	GGGAC	4 cut(s)	425, 711, 1283, 2288
BslI	CCNNNNNNNGG	7 cut(s)	421, 788, 977, 1062, 1624, 1849, 2296
BsmAI	GTCTC	3 cut(s)	1421, 1924, 2161
BsmBI	CGTCTC	1 cut(s)	2161
BsmFI	GGGAC	4 cut(s)	425, 711, 1283, 2288
BsmI	GAATGC	2 cut(s)	1023, 2135
BsnI	GGCC	6 cut(s)	69, 184, 467, 524, 1212, 2085
Bso31I	GGTCTC	1 cut(s)	1924
BsoBI	CYCGRG	1 cut(s)	971
Bsp120I	GGGCCC	1 cut(s)	1210
Bsp1286I	GDGCHC	8 cut(s)	57, 93, 372, 647, 828, 1214, 1326, 1635
Bsp143I	GATC	8 cut(s)	535, 898, 948, 1222, 1468, 1504, 2062, 2108
Bsp1720I	GCTNAGC	1 cut(s)	690
Bsp19I	CCATGG	1 cut(s)	2531
BspANI	GGCC	6 cut(s)	69, 184, 467, 524, 1212, 2085
BspCNI	CTCAG	6 cut(s)	612, 682, 1371, 1390, 2395, 2432
BspMI	ACCTGC	1 cut(s)	986
BspPI	GGATC	4 cut(s)	956, 1217, 1463, 1499
BspT107I	GGYRCC	3 cut(s)	644, 1267, 2072
BspTNI	GGTCTC	1 cut(s)	1924
BsrDI	GCAATG	3 cut(s)	478, 483, 2248
BsrFI	RCCGGY	1 cut(s)	467
BsrI	ACTGG	4 cut(s)	1105, 1313, 1415, 1534
BssAI	RCCGGY	1 cut(s)	467
BssECI	CCNNGG	6 cut(s)	387, 558, 852, 2102, 2446, 2531
BssMI	GATC	8 cut(s)	535, 898, 948, 1222, 1468, 1504, 2062, 2108
BssSI	CACGAG	1 cut(s)	1325
BssT1I	CCWWGG	3 cut(s)	387, 558, 2531
Bst2BI	CACGAG	1 cut(s)	1325
Bst2UI	CCWGG	7 cut(s)	245, 789, 1272, 1844, 2103, 2173, 2448
Bst4CI	ACNGT	6 cut(s)	649, 1839, 1918, 2184, 2272, 2510
BstBAI	YACGTR	1 cut(s)	2567
BstC8I	GCNNGC	6 cut(s)	469, 816, 1082, 1131, 1733, 2484
BstDEI	CTNAG	7 cut(s)	599, 690, 1158, 1379, 1398, 2382, 2419
BstDSI	CCRYGG	1 cut(s)	2531
BstENI	CCTNNNNNAGG	2 cut(s)	786, 1847
BstH2I	RGCGCY	2 cut(s)	170, 1127
BstHHI	GCGC	3 cut(s)	169, 385, 1126
BstKTI	GATC	8 cut(s)	538, 901, 951, 1225, 1471, 1507, 2065, 2111
BstMAI	GTCTC	3 cut(s)	1421, 1924, 2161
BstMBI	GATC	8 cut(s)	535, 898, 948, 1222, 1468, 1504, 2062, 2108
BstMWI	GCNNNNNNNGC	7 cut(s)	141, 1130, 1139, 1148, 1160, 1399, 1639
BstNI	CCWGG	7 cut(s)	245, 789, 1272, 1844, 2103, 2173, 2448
BstNSI	RCATGY	4 cut(s)	1013, 1133, 1731, 2486
BstSLI	GKGCMC	4 cut(s)	647, 828, 1214, 1326
BstV1I	GCAGC	7 cut(s)	642, 1113, 1138, 1141, 1597, 2163, 2466
BstV2I	GAAGAC	3 cut(s)	864, 1482, 2385
BstX2I	RGATCY	1 cut(s)	1504
BstXI	CCANNNNNNTGG	1 cut(s)	345
BstYI	RGATCY	1 cut(s)	1504
BsuRI	GGCC	6 cut(s)	69, 184, 467, 524, 1212, 2085
BtgI	CCRYGG	1 cut(s)	2531
BtsI	GCAGTG	1 cut(s)	1722
BtsIMutI	CAGTG	5 cut(s)	27, 1007, 1376, 1722, 2286
BveI	ACCTGC	1 cut(s)	986
Cac8I	GCNNGC	6 cut(s)	469, 816, 1082, 1131, 1733, 2484
CaiI	CAGNNNCTG	1 cut(s)	1466
CfoI	GCGC	3 cut(s)	169, 385, 1126
Cfr10I	RCCGGY	1 cut(s)	467
Cfr13I	GGNCC	7 cut(s)	183, 313, 334, 412, 1210, 1211, 1615
CsiI	ACCWGGT	1 cut(s)	243
Csp6I	GTAC	2 cut(s)	1053, 2073
CviQI	GTAC	2 cut(s)	1053, 2073
DdeI	CTNAG	7 cut(s)	599, 690, 1158, 1379, 1398, 2382, 2419
DpnI	GATC	8 cut(s)	537, 900, 950, 1224, 1470, 1506, 2064, 2110
DpnII	GATC	8 cut(s)	535, 898, 948, 1222, 1468, 1504, 2062, 2108
DraIII	CACNNNGTG	1 cut(s)	651
EaeI	YGGCCR	2 cut(s)	522, 2083
EciI	GGCGGA	1 cut(s)	1643
Ecl136II	GAGCTC	2 cut(s)	370, 1633
Eco130I	CCWWGG	3 cut(s)	387, 558, 2531
Eco24I	GRGCYC	5 cut(s)	57, 93, 372, 1214, 1635
Eco31I	GGTCTC	1 cut(s)	1924
Eco32I	GATATC	1 cut(s)	986
Eco47I	GGWCC	4 cut(s)	313, 334, 412, 1615
Eco47III	AGCGCT	2 cut(s)	168, 1125
Eco53kI	GAGCTC	2 cut(s)	370, 1633
Eco57I	CTGAAG	5 cut(s)	552, 840, 1494, 1521, 1785
Eco88I	CYCGRG	1 cut(s)	971
EcoICRI	GAGCTC	2 cut(s)	370, 1633
EcoNI	CCTNNNNNAGG	2 cut(s)	786, 1847
EcoO109I	RGGNCCY	4 cut(s)	313, 334, 412, 1210
EcoRII	CCWGG	7 cut(s)	243, 787, 1270, 1842, 2101, 2171, 2446
EcoRV	GATATC	1 cut(s)	986
EcoT14I	CCWWGG	3 cut(s)	387, 558, 2531
EcoT22I	ATGCAT	2 cut(s)	1023, 2488
EcoT38I	GRGCYC	5 cut(s)	57, 93, 372, 1214, 1635
ErhI	CCWWGG	3 cut(s)	387, 558, 2531
Esp3I	CGTCTC	1 cut(s)	2161
FalI	AAGNNNNNCTT	2 cut(s)	1494, 1526
FaqI	GGGAC	4 cut(s)	425, 711, 1283, 2288
FauI	CCCGC	3 cut(s)	342, 486, 1126
FauNDI	CATATG	1 cut(s)	1318
FblI	GTMKAC	2 cut(s)	120, 681
Fnu4HI	GCNGC	8 cut(s)	631, 1127, 1152, 1155, 1586, 1589, 2177, 2480
FriOI	GRGCYC	5 cut(s)	57, 93, 372, 1214, 1635
Fsp4HI	GCNGC	8 cut(s)	631, 1127, 1152, 1155, 1586, 1589, 2177, 2480
FspBI	CTAG	3 cut(s)	902, 1085, 1751
GlaI	GCGC	3 cut(s)	168, 384, 1125
GluI	GCNGC	8 cut(s)	631, 1127, 1152, 1155, 1586, 1589, 2177, 2480
GsaI	CCCAGC	1 cut(s)	40
GsuI	CTGGAG	1 cut(s)	1416
HaeII	RGCGCY	2 cut(s)	170, 1127
HaeIII	GGCC	6 cut(s)	69, 184, 467, 524, 1212, 2085
HhaI	GCGC	3 cut(s)	169, 385, 1126
Hin6I	GCGC	3 cut(s)	167, 383, 1124
HinP1I	GCGC	3 cut(s)	167, 383, 1124
HincII	GTYRAC	3 cut(s)	763, 1045, 1450
HindII	GTYRAC	3 cut(s)	763, 1045, 1450
HindIII	AAGCTT	2 cut(s)	797, 1487
HpaI	GTTAAC	1 cut(s)	1450
HphI	GGTGA	7 cut(s)	34, 164, 389, 728, 1688, 2481, 2582
Hpy166II	GTNNAC	9 cut(s)	121, 682, 763, 1045, 1177, 1324, 1450, 1615, 2314
Hpy188I	TCNGA	9 cut(s)	82, 88, 106, 602, 919, 953, 1167, 1399, 2506
Hpy188III	TCNNGA	6 cut(s)	218, 837, 887, 1433, 1472, 2066
Hpy8I	GTNNAC	9 cut(s)	121, 682, 763, 1045, 1177, 1324, 1450, 1615, 2314
Hpy99I	CGWCG	1 cut(s)	110
HpyAV	CCTTC	9 cut(s)	119, 358, 707, 815, 1372, 1404, 1526, 1646, 2083
HpyCH4III	ACNGT	6 cut(s)	649, 1839, 1918, 2184, 2272, 2510
HpyCH4IV	ACGT	2 cut(s)	684, 2566
HpyF10VI	GCNNNNNNNGC	7 cut(s)	141, 1130, 1139, 1148, 1160, 1399, 1639
HpyF3I	CTNAG	7 cut(s)	599, 690, 1158, 1379, 1398, 2382, 2419
HpySE526I	ACGT	2 cut(s)	684, 2566
HspAI	GCGC	3 cut(s)	167, 383, 1124
KflI	GGGWCCC	1 cut(s)	412
KpnI	GGTACC	1 cut(s)	2076
KroI	GCCGGC	1 cut(s)	467
KroNI	GCCGGC	1 cut(s)	469
KspAI	GTTAAC	1 cut(s)	1450
Kzo9I	GATC	8 cut(s)	535, 898, 948, 1222, 1468, 1504, 2062, 2108
LmnI	GCTCC	6 cut(s)	367, 493, 1378, 1630, 1638, 2545
Lsp1109I	GCAGC	7 cut(s)	642, 1113, 1138, 1141, 1597, 2163, 2466
LweI	GCATC	5 cut(s)	370, 801, 1689, 2017, 2495
MabI	ACCWGGT	1 cut(s)	243
MaeI	CTAG	3 cut(s)	902, 1085, 1751
MaeII	ACGT	2 cut(s)	684, 2566
MaeIII	GTNAC	4 cut(s)	137, 249, 1676, 2093
MalI	GATC	8 cut(s)	537, 900, 950, 1224, 1470, 1506, 2064, 2110
MboI	GATC	8 cut(s)	535, 898, 948, 1222, 1468, 1504, 2062, 2108
MfeI	CAATTG	1 cut(s)	1971
MflI	RGATCY	1 cut(s)	1504
MhlI	GDGCHC	8 cut(s)	57, 93, 372, 647, 828, 1214, 1326, 1635
MlsI	TGGCCA	1 cut(s)	2085
MluCI	AATT	7 cut(s)	172, 921, 1286, 1436, 1799, 1854, 1971
MluNI	TGGCCA	1 cut(s)	2085
MlyI	GAGTC	7 cut(s)	8, 77, 119, 687, 693, 1423, 2510
MmeI	TCCRAC	5 cut(s)	105, 129, 558, 852, 2484
Mox20I	TGGCCA	1 cut(s)	2085
Mph1103I	ATGCAT	2 cut(s)	1023, 2488
MroNI	GCCGGC	1 cut(s)	467
MroXI	GAANNNNTTC	3 cut(s)	236, 723, 1361
MscI	TGGCCA	1 cut(s)	2085
MseI	TTAA	5 cut(s)	450, 462, 1449, 1538, 2593
MslI	CAYNNNNRTG	1 cut(s)	1026
Msp20I	TGGCCA	1 cut(s)	2085
MunI	CAATTG	1 cut(s)	1971
Mva1269I	GAATGC	2 cut(s)	1023, 2135
MvaI	CCWGG	7 cut(s)	245, 789, 1272, 1844, 2103, 2173, 2448
MwoI	GCNNNNNNNGC	7 cut(s)	141, 1130, 1139, 1148, 1160, 1399, 1639
NaeI	GCCGGC	1 cut(s)	469
NciI	CCSGG	6 cut(s)	62, 186, 329, 405, 416, 854
NcoI	CCATGG	1 cut(s)	2531
NdeI	CATATG	1 cut(s)	1318
NdeII	GATC	8 cut(s)	535, 898, 948, 1222, 1468, 1504, 2062, 2108
NgoMIV	GCCGGC	1 cut(s)	467
NmuCI	GTSAC	1 cut(s)	1676
NsiI	ATGCAT	2 cut(s)	1023, 2488
NspI	RCATGY	4 cut(s)	1013, 1133, 1731, 2486
PaeI	GCATGC	2 cut(s)	1133, 2486
PcsI	WCGNNNNNNNCGW	3 cut(s)	105, 114, 1531
PctI	GAATGC	2 cut(s)	1023, 2135
PdiI	GCCGGC	1 cut(s)	469
PdmI	GAANNNNTTC	3 cut(s)	236, 723, 1361
PfeI	GAWTC	4 cut(s)	32, 101, 2164, 2276
PfoI	TCCNGGA	1 cut(s)	327
PkrI	GCNGC	8 cut(s)	632, 1128, 1153, 1156, 1587, 1590, 2178, 2481
PleI	GAGTC	7 cut(s)	8, 77, 118, 686, 693, 1423, 2509
PpsI	GAGTC	7 cut(s)	8, 77, 118, 686, 693, 1423, 2509
Ppu21I	YACGTR	1 cut(s)	2567
PpuMI	RGGWCCY	3 cut(s)	313, 334, 412
PshBI	ATTAAT	1 cut(s)	1538
Psp124BI	GAGCTC	2 cut(s)	372, 1635
Psp5II	RGGWCCY	3 cut(s)	313, 334, 412
Psp6I	CCWGG	7 cut(s)	243, 787, 1270, 1842, 2101, 2171, 2446
PspFI	CCCAGC	1 cut(s)	36
PspGI	CCWGG	7 cut(s)	243, 787, 1270, 1842, 2101, 2171, 2446
PspOMI	GGGCCC	1 cut(s)	1210
PspPI	GGNCC	7 cut(s)	183, 313, 334, 412, 1210, 1211, 1615
PspPPI	RGGWCCY	3 cut(s)	313, 334, 412
PstNI	CAGNNNCTG	1 cut(s)	1466
PsuI	RGATCY	1 cut(s)	1504
RsaI	GTAC	2 cut(s)	1054, 2074
RsaNI	GTAC	2 cut(s)	1053, 2073
RseI	CAYNNNNRTG	1 cut(s)	1026
SacI	GAGCTC	2 cut(s)	372, 1635
SaqAI	TTAA	5 cut(s)	450, 462, 1449, 1538, 2593
SatI	GCNGC	8 cut(s)	631, 1127, 1152, 1155, 1586, 1589, 2177, 2480
Sau3AI	GATC	8 cut(s)	535, 898, 948, 1222, 1468, 1504, 2062, 2108
Sau96I	GGNCC	7 cut(s)	183, 313, 334, 412, 1210, 1211, 1615
SchI	GAGTC	7 cut(s)	8, 77, 119, 687, 693, 1423, 2510
SduI	GDGCHC	8 cut(s)	57, 93, 372, 647, 828, 1214, 1326, 1635
SexAI	ACCWGGT	1 cut(s)	243
SfaNI	GCATC	5 cut(s)	370, 801, 1689, 2017, 2495
SinI	GGWCC	4 cut(s)	313, 334, 412, 1615
SmiMI	CAYNNNNRTG	1 cut(s)	1026
SphI	GCATGC	2 cut(s)	1133, 2486
Sse9I	AATT	7 cut(s)	172, 921, 1286, 1436, 1799, 1854, 1971
SspMI	CTAG	3 cut(s)	902, 1085, 1751
SstI	GAGCTC	2 cut(s)	372, 1635
StyI	CCWWGG	3 cut(s)	387, 558, 2531
TaaI	ACNGT	6 cut(s)	649, 1839, 1918, 2184, 2272, 2510
TaiI	ACGT	2 cut(s)	687, 2569
TaqI	TCGA	3 cut(s)	159, 982, 1551
TasI	AATT	7 cut(s)	172, 921, 1286, 1436, 1799, 1854, 1971
TauI	GCSGC	1 cut(s)	1591
TfiI	GAWTC	4 cut(s)	32, 101, 2164, 2276
Tru1I	TTAA	5 cut(s)	450, 462, 1449, 1538, 2593
Tru9I	TTAA	5 cut(s)	450, 462, 1449, 1538, 2593
TscAI	CASTG	5 cut(s)	34, 1007, 1383, 1722, 2286
TseFI	GTSAC	1 cut(s)	1676
TseI	GCWGC	7 cut(s)	630, 1126, 1151, 1154, 1585, 2176, 2479
Tsp45I	GTSAC	1 cut(s)	1676
TspGWI	ACGGA	2 cut(s)	106, 2283
TspRI	CASTG	5 cut(s)	34, 1007, 1383, 1722, 2286
VneI	GTGCAC	1 cut(s)	1322
VpaK11BI	GGWCC	4 cut(s)	313, 334, 412, 1615
VspI	ATTAAT	1 cut(s)	1538
XagI	CCTNNNNNAGG	2 cut(s)	786, 1847
XapI	RAATTY	2 cut(s)	921, 1436
XceI	RCATGY	4 cut(s)	1013, 1133, 1731, 2486
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2128
XmiI	GTMKAC	2 cut(s)	120, 681
XmnI	GAANNNNTTC	3 cut(s)	236, 723, 1361
XspI	CTAG	3 cut(s)	902, 1085, 1751
Zsp2I	ATGCAT	2 cut(s)	1023, 2488

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.