Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8251283.1

Orthogroup ID

OG0006193

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 436

Gene Structure 436 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8251283.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 268 bp

gtatgaaggtgaatggcttcaaaacaacatggagggtcatggggttgttgaagttgacatacctgacatagagcctattccaggttccaagcttgaagcacagatgcgtgctgaagggcacataatatcaagagattatatgaccccggaagacaaagaatggttggagatggatattcaagacagcattgatctagcaggggggcggtctgaaattcctttttatgaaaaagatgaatggatcagacattttgggaggaaaccgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006605 GO:0006810 GO:0006886 GO:0006996 GO:0007275 GO:0008104 GO:0008150 GO:0008565 GO:0009507 GO:0009526 GO:0009528 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009657 GO:0009658 GO:0009706 GO:0009790 GO:0009791 GO:0009793 GO:0009941 GO:0009987 GO:0010154 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0017038 GO:0019866 GO:0022414 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0033036 GO:0033365 GO:0034357 GO:0034613 GO:0042170 GO:0042651 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055035 GO:0055085 GO:0061458 GO:0065002 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072596 GO:0072598

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MORN

Protein Analysis

88

Amino Acids

10.27

Weight (kDa)

4.43

Isoelectric Point (pI)

45.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006193)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22640 AT5G22640 AT5G22640
fragaria_vesca	FvH4_3g29910 FvH4_3g29910 FvH4_3g29910
malus_domestica	MD03G1134600.v1.1 MD11G1157100.v1.1
prunus_persica	Prupe.6G118900_v2.0.a1 Prupe.6G118900_v2.0.a1
pyrus_communis	pycom03g09060 pycom11g12730
rosa_chinensis	RchiOBHm_Chr5g0055251
rosa_laevigata	RLG00000034978
rosa_multiflora	Rmu_co8251283.1_g000001 Rmu_co8349015.1_g000001 Rmu_sc0003110.1_g000015 Rmu_sc0013362.1_g000001 Rmu_sc0014992.1_g000001
rosa_roxburghii	Rroxscaffold_1G00025050
rosa_rugosa	Rorug05G0292100 Rorug05G0292200
rosa_samantha	Rh5AG361900 Rh5BG373500 Rh5CG395200 Rh5DG386700
rosa_wichuraiana	Rw5G034030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	206
AclWI	GGATC	1 cut(s)	249
AcsI	RAATTY	1 cut(s)	214
AcuI	CTGAAG	1 cut(s)	133
AfiI	CCNNNNNNNGG	1 cut(s)	81
AgsI	TTSAA	4 cut(s)	21, 51, 96, 180
AjnI	CCWGG	1 cut(s)	80
AluBI	AGCT	1 cut(s)	92
AluI	AGCT	1 cut(s)	92
AlwI	GGATC	1 cut(s)	249
ApoI	RAATTY	1 cut(s)	214
Asp700I	GAANNNNTTC	1 cut(s)	16
AsuC2I	CCSGG	1 cut(s)	147
AsuHPI	GGTGA	1 cut(s)	21
BaeGI	GKGCMC	1 cut(s)	121
BarI	GAAGNNNNNNTAC	2 cut(s)	43, 75
BbsI	GAAGAC	1 cut(s)	157
BccI	CCATC	1 cut(s)	164
BciT130I	CCWGG	1 cut(s)	82
BcnI	CCSGG	1 cut(s)	147
BfaI	CTAG	1 cut(s)	195
Bme1390I	CCNGG	2 cut(s)	82, 147
BmiI	GGNNCC	1 cut(s)	86
BmrFI	CCNGG	2 cut(s)	82, 147
BmsI	GCATC	1 cut(s)	94
BpiI	GAAGAC	1 cut(s)	157
BpuMI	CCSGG	1 cut(s)	147
BsaJI	CCNNGG	1 cut(s)	145
Bsc4I	CCNNNNNNNGG	1 cut(s)	81
BseBI	CCWGG	1 cut(s)	82
BseDI	CCNNGG	1 cut(s)	145
BseLI	CCNNNNNNNGG	1 cut(s)	81
BseSI	GKGCMC	1 cut(s)	121
BsiSI	CCGG	1 cut(s)	147
BslI	CCNNNNNNNGG	1 cut(s)	81
Bsp1286I	GDGCHC	1 cut(s)	121
Bsp143I	GATC	2 cut(s)	191, 241
BspACI	CCGC	1 cut(s)	206
BspLI	GGNNCC	1 cut(s)	86
BspPI	GGATC	1 cut(s)	249
BssECI	CCNNGG	1 cut(s)	145
BssMI	GATC	2 cut(s)	191, 241
Bst2UI	CCWGG	1 cut(s)	82
Bst4CI	ACNGT	1 cut(s)	265
BstC8I	GCNNGC	1 cut(s)	109
BstENI	CCTNNNNNAGG	1 cut(s)	79
BstKTI	GATC	2 cut(s)	194, 244
BstMBI	GATC	2 cut(s)	191, 241
BstNI	CCWGG	1 cut(s)	82
BstSCI	CCNGG	2 cut(s)	80, 145
BstSLI	GKGCMC	1 cut(s)	121
BstV2I	GAAGAC	1 cut(s)	157
Cac8I	GCNNGC	1 cut(s)	109
CviAII	CATG	2 cut(s)	29, 39
CviJI	RGCY	3 cut(s)	17, 74, 92
CviKI_1	RGCY	3 cut(s)	17, 74, 92
DpnI	GATC	2 cut(s)	193, 243
DpnII	GATC	2 cut(s)	191, 241
Eco57I	CTGAAG	1 cut(s)	133
EcoNI	CCTNNNNNAGG	1 cut(s)	79
EcoRII	CCWGG	1 cut(s)	80
FaeI	CATG	2 cut(s)	32, 42
FaiI	YATR	9 cut(s)	4, 30, 40, 60, 69, 123, 139, 141, 226
FatI	CATG	2 cut(s)	28, 38
FspBI	CTAG	1 cut(s)	195
HapII	CCGG	1 cut(s)	147
Hin1II	CATG	2 cut(s)	32, 42
HincII	GTYRAC	1 cut(s)	56
HindII	GTYRAC	1 cut(s)	56
HindIII	AAGCTT	1 cut(s)	90
HpaII	CCGG	1 cut(s)	147
HphI	GGTGA	1 cut(s)	21
Hpy166II	GTNNAC	1 cut(s)	56
Hpy188I	TCNGA	2 cut(s)	212, 246
Hpy188III	TCNNGA	2 cut(s)	130, 180
Hpy8I	GTNNAC	1 cut(s)	56
HpyAV	CCTTC	1 cut(s)	108
HpyCH4III	ACNGT	1 cut(s)	265
Hsp92II	CATG	2 cut(s)	32, 42
Kzo9I	GATC	2 cut(s)	191, 241
LpnPI	CCDG	5 cut(s)	67, 76, 94, 160, 184
LweI	GCATC	1 cut(s)	94
MaeI	CTAG	1 cut(s)	195
MalI	GATC	2 cut(s)	193, 243
MboI	GATC	2 cut(s)	191, 241
MboII	GAAGA	1 cut(s)	162
MhlI	GDGCHC	1 cut(s)	121
MluCI	AATT	1 cut(s)	214
MmeI	TCCRAC	1 cut(s)	145
MnlI	CCTC	2 cut(s)	26, 250
MroXI	GAANNNNTTC	1 cut(s)	16
MspI	CCGG	1 cut(s)	147
MspR9I	CCNGG	2 cut(s)	82, 147
MvaI	CCWGG	1 cut(s)	82
NciI	CCSGG	1 cut(s)	147
NdeII	GATC	2 cut(s)	191, 241
NlaIII	CATG	2 cut(s)	32, 42
NlaIV	GGNNCC	1 cut(s)	86
PdmI	GAANNNNTTC	1 cut(s)	16
Psp6I	CCWGG	1 cut(s)	80
PspGI	CCWGG	1 cut(s)	80
PspN4I	GGNNCC	1 cut(s)	86
Sau3AI	GATC	2 cut(s)	191, 241
ScrFI	CCNGG	2 cut(s)	82, 147
SduI	GDGCHC	1 cut(s)	121
SetI	ASST	4 cut(s)	11, 65, 86, 94
SfaNI	GCATC	1 cut(s)	94
Sse9I	AATT	1 cut(s)	214
SsiI	CCGC	1 cut(s)	206
SspMI	CTAG	1 cut(s)	195
StyD4I	CCNGG	2 cut(s)	80, 145
TaaI	ACNGT	1 cut(s)	265
TasI	AATT	1 cut(s)	214
TspDTI	ATGAA	3 cut(s)	19, 241, 250
XagI	CCTNNNNNAGG	1 cut(s)	79
XapI	RAATTY	1 cut(s)	214
XmnI	GAANNNNTTC	1 cut(s)	16
XspI	CTAG	1 cut(s)	195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.