Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013362.1

Orthogroup ID

OG0006193

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 3037

Gene Structure 3037 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013362.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

atgtggttggtcaagttaagtactttatcttgtctttgcgtacaggggaggttctactttggcgagctagtggaggatgatactggttgtgatgaggatgtatcagcgctgcatgcgggtattgcagaagtggctgctgctaaggctcggatgtttgtgaacaagcctgatggaatggttagggaagagaggggcccgtatagtgatcctcaacatccctatttctatgaagatgaagatgtttggatggcaccaggcttcataaaccaattctatgaagtccctgattactggaaaacatatgtgcatgaggttgatgaggaaagggaaatgtggttgaactccttctataaagctccactgagaatacctatgccttctgagcttgaatactggtggtcaaaggaggagactccagaatttattgttgttaacaaggaaccagagcctgatcctgaggacccatcaaagcttatatatactgaagatccacttatccttcacacacgaactggacggttaatcaactatatcgaagatgaaaaacatggggttcgcctattttggcagccgcctctcaaagatggggaagaggtggacccagaaaaggcggagctccttccgcttggttatgacgagttctatggacaaaacattggtgacaagaaacaaaactttttgatgcgacttatatcagcagtggaaaatacatgcaagcctgtttttgataaactagagaaatggactgaagagaagaggaaagcaagtgagatgaagatgaaattgattgaaaaagaacttgaactgatagaggctgaactgtgcctggaagaggtaattgaggatatggatgaggagttgaagatgagagagaaagaggaggagaagaatgtcgaaatggtctcgccggatgaagaagatacttctccgttggctaaccaagatgagaaatcaattgaagaggatgaagaggaagaggaagatgaagatgaagatgaagatgatgctgtgccatcaagttttggatctgtaagaggagatcaggatggtaccaaaaatggccagaagggtaacaaacctgggcgatctccattttccacatcgtcattggcattcgcttcaaatagcctcgtctctggg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006605 GO:0006810 GO:0006886 GO:0006996 GO:0007275 GO:0008104 GO:0008150 GO:0008565 GO:0009507 GO:0009526 GO:0009528 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009657 GO:0009658 GO:0009706 GO:0009790 GO:0009791 GO:0009793 GO:0009941 GO:0009987 GO:0010154 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0017038 GO:0019866 GO:0022414 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0033036 GO:0033365 GO:0034357 GO:0034613 GO:0042170 GO:0042651 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055035 GO:0055085 GO:0061458 GO:0065002 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072596 GO:0072598

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MORN

Protein Analysis

380

Amino Acids

43.96

Weight (kDa)

4.32

Isoelectric Point (pI)

59.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006193)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22640 AT5G22640 AT5G22640
fragaria_vesca	FvH4_3g29910 FvH4_3g29910 FvH4_3g29910
malus_domestica	MD03G1134600.v1.1 MD11G1157100.v1.1
prunus_persica	Prupe.6G118900_v2.0.a1 Prupe.6G118900_v2.0.a1
pyrus_communis	pycom03g09060 pycom11g12730
rosa_chinensis	RchiOBHm_Chr5g0055251
rosa_laevigata	RLG00000034978
rosa_multiflora	Rmu_co8251283.1_g000001 Rmu_co8349015.1_g000001 Rmu_sc0003110.1_g000015 Rmu_sc0013362.1_g000001 Rmu_sc0014992.1_g000001
rosa_roxburghii	Rroxscaffold_1G00025050
rosa_rugosa	Rorug05G0292100 Rorug05G0292200
rosa_samantha	Rh5AG361900 Rh5BG373500 Rh5CG395200 Rh5DG386700
rosa_wichuraiana	Rw5G034030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1049
AccB1I	GGYRCC	2 cut(s)	250, 1049
AciI	CCGC	4 cut(s)	116, 572, 611, 623
AclWI	GGATC	4 cut(s)	200, 446, 482, 1033
AcoI	YGGCCR	1 cut(s)	1060
AcsI	RAATTY	1 cut(s)	419
AcuI	CTGAAG	2 cut(s)	504, 768
AfaI	GTAC	3 cut(s)	22, 42, 1051
AfeI	AGCGCT	1 cut(s)	108
AfiI	CCNNNNNNNGG	2 cut(s)	607, 832
AgsI	TTSAA	7 cut(s)	340, 389, 791, 803, 862, 959, 1122
AjnI	CCWGG	3 cut(s)	253, 825, 1078
AluBI	AGCT	5 cut(s)	67, 356, 385, 472, 616
AluI	AGCT	5 cut(s)	67, 356, 385, 472, 616
Alw21I	GWGCWC	1 cut(s)	618
Alw26I	GTCTC	2 cut(s)	404, 907
AlwI	GGATC	4 cut(s)	200, 446, 482, 1033
AlwNI	CAGNNNCTG	1 cut(s)	449
Aor51HI	AGCGCT	1 cut(s)	108
AoxI	GGCC	2 cut(s)	193, 1060
ApaI	GGGCCC	1 cut(s)	197
ApeKI	GCWGC	4 cut(s)	109, 134, 137, 568
ApoI	RAATTY	1 cut(s)	419
Asp700I	GAANNNNTTC	1 cut(s)	344
Asp718I	GGTACC	1 cut(s)	1049
AspLEI	GCGC	1 cut(s)	109
AspS9I	GGNCC	4 cut(s)	193, 194, 460, 598
AsuHPI	GGTGA	1 cut(s)	671
AvaII	GGWCC	2 cut(s)	460, 598
AxyI	CCTNAGG	1 cut(s)	456
BaeGI	GKGCMC	1 cut(s)	197
BalI	TGGCCA	1 cut(s)	1062
BanI	GGYRCC	2 cut(s)	250, 1049
BanII	GRGCYC	2 cut(s)	197, 618
Bbv12I	GWGCWC	1 cut(s)	618
BbvI	GCAGC	4 cut(s)	96, 121, 124, 580
BccI	CCATC	6 cut(s)	164, 241, 472, 578, 1021, 1040
BciT130I	CCWGG	3 cut(s)	255, 827, 1080
BcoDI	GTCTC	2 cut(s)	404, 907
BfaI	CTAG	2 cut(s)	68, 734
BfoI	RGCGCY	1 cut(s)	110
BisI	GCNGC	5 cut(s)	110, 135, 138, 569, 572
BlsI	GCNGC	5 cut(s)	111, 136, 139, 570, 573
BmcAI	AGTACT	1 cut(s)	22
Bme1390I	CCNGG	3 cut(s)	255, 827, 1080
Bme18I	GGWCC	2 cut(s)	460, 598
BmgT120I	GGNCC	4 cut(s)	193, 194, 460, 598
BmiI	GGNNCC	7 cut(s)	194, 195, 252, 441, 462, 600, 1051
BmrFI	CCNGG	3 cut(s)	255, 827, 1080
BmsI	GCATC	2 cut(s)	672, 994
BpmI	CTGGAG	1 cut(s)	399
Bpu10I	CCTNAGC	1 cut(s)	141
BsaI	GGTCTC	1 cut(s)	907
BsaJI	CCNNGG	1 cut(s)	1079
Bsc4I	CCNNNNNNNGG	2 cut(s)	607, 832
Bse1I	ACTGG	4 cut(s)	88, 296, 398, 517
Bse21I	CCTNAGG	1 cut(s)	456
BseBI	CCWGG	3 cut(s)	255, 827, 1080
BseDI	CCNNGG	1 cut(s)	1079
BseGI	GGATG	9 cut(s)	82, 103, 156, 214, 252, 856, 916, 970, 1051
BseLI	CCNNNNNNNGG	2 cut(s)	607, 832
BseMII	CTCAG	3 cut(s)	353, 372, 447
BseNI	ACTGG	4 cut(s)	88, 296, 398, 517
BseRI	GAGGAG	5 cut(s)	422, 869, 893, 896, 1050
BseSI	GKGCMC	1 cut(s)	197
BseXI	GCAGC	4 cut(s)	96, 121, 124, 580
BshFI	GGCC	2 cut(s)	195, 1062
BshNI	GGYRCC	2 cut(s)	250, 1049
BsiHKAI	GWGCWC	1 cut(s)	618
BsiSI	CCGG	1 cut(s)	908
BslFI	GGGAC	1 cut(s)	266
BslI	CCNNNNNNNGG	2 cut(s)	607, 832
BsmAI	GTCTC	2 cut(s)	404, 907
BsmFI	GGGAC	1 cut(s)	266
BsmI	GAATGC	1 cut(s)	1112
BsnI	GGCC	2 cut(s)	195, 1062
Bso31I	GGTCTC	1 cut(s)	907
Bsp120I	GGGCCC	1 cut(s)	193
Bsp1286I	GDGCHC	2 cut(s)	197, 618
Bsp143I	GATC	6 cut(s)	205, 451, 487, 1025, 1039, 1085
BspACI	CCGC	4 cut(s)	116, 572, 611, 623
BspANI	GGCC	2 cut(s)	195, 1062
BspCNI	CTCAG	3 cut(s)	354, 373, 448
BspLI	GGNNCC	7 cut(s)	194, 195, 252, 441, 462, 600, 1051
BspPI	GGATC	4 cut(s)	200, 446, 482, 1033
BspT107I	GGYRCC	2 cut(s)	250, 1049
BspTNI	GGTCTC	1 cut(s)	907
BsrI	ACTGG	4 cut(s)	88, 296, 398, 517
BssECI	CCNNGG	1 cut(s)	1079
BssMI	GATC	6 cut(s)	205, 451, 487, 1025, 1039, 1085
Bst2UI	CCWGG	3 cut(s)	255, 827, 1080
Bst4CI	ACNGT	2 cut(s)	519, 822
Bst6I	CTCTTC	8 cut(s)	180, 585, 744, 749, 825, 954, 963, 969
BstC8I	GCNNGC	3 cut(s)	65, 114, 716
BstDEI	CTNAG	4 cut(s)	141, 362, 381, 456
BstENI	CCTNNNNNAGG	1 cut(s)	830
BstF5I	GGATG	9 cut(s)	82, 103, 156, 214, 252, 856, 916, 970, 1051
BstH2I	RGCGCY	1 cut(s)	110
BstHHI	GCGC	1 cut(s)	109
BstKTI	GATC	6 cut(s)	208, 454, 490, 1028, 1042, 1088
BstMAI	GTCTC	2 cut(s)	404, 907
BstMBI	GATC	6 cut(s)	205, 451, 487, 1025, 1039, 1085
BstMWI	GCNNNNNNNGC	6 cut(s)	113, 122, 131, 143, 382, 622
BstNI	CCWGG	3 cut(s)	255, 827, 1080
BstNSI	RCATGY	2 cut(s)	116, 714
BstSCI	CCNGG	3 cut(s)	253, 825, 1078
BstSLI	GKGCMC	1 cut(s)	197
BstV1I	GCAGC	4 cut(s)	96, 121, 124, 580
BstX2I	RGATCY	2 cut(s)	487, 1025
BstYI	RGATCY	2 cut(s)	487, 1025
Bsu36I	CCTNAGG	1 cut(s)	456
BsuRI	GGCC	2 cut(s)	195, 1062
BtsCI	GGATG	9 cut(s)	82, 103, 156, 214, 252, 856, 916, 970, 1051
BtsI	GCAGTG	1 cut(s)	705
BtsIMutI	CAGTG	2 cut(s)	359, 705
Cac8I	GCNNGC	3 cut(s)	65, 114, 716
CaiI	CAGNNNCTG	1 cut(s)	449
CfoI	GCGC	1 cut(s)	109
Cfr13I	GGNCC	4 cut(s)	193, 194, 460, 598
Csp6I	GTAC	3 cut(s)	21, 41, 1050
CviAII	CATG	4 cut(s)	113, 308, 548, 711
CviQI	GTAC	3 cut(s)	21, 41, 1050
DdeI	CTNAG	4 cut(s)	141, 362, 381, 456
DpnI	GATC	6 cut(s)	207, 453, 489, 1027, 1041, 1087
DpnII	GATC	6 cut(s)	205, 451, 487, 1025, 1039, 1085
EaeI	YGGCCR	1 cut(s)	1060
Eam1104I	CTCTTC	8 cut(s)	180, 585, 744, 749, 825, 954, 963, 969
EarI	CTCTTC	8 cut(s)	180, 585, 744, 749, 825, 954, 963, 969
EciI	GGCGGA	1 cut(s)	626
Ecl136II	GAGCTC	1 cut(s)	616
Eco24I	GRGCYC	2 cut(s)	197, 618
Eco31I	GGTCTC	1 cut(s)	907
Eco47I	GGWCC	2 cut(s)	460, 598
Eco47III	AGCGCT	1 cut(s)	108
Eco53kI	GAGCTC	1 cut(s)	616
Eco57I	CTGAAG	2 cut(s)	504, 768
Eco81I	CCTNAGG	1 cut(s)	456
EcoICRI	GAGCTC	1 cut(s)	616
EcoNI	CCTNNNNNAGG	1 cut(s)	830
EcoO109I	RGGNCCY	2 cut(s)	193, 460
EcoRII	CCWGG	3 cut(s)	253, 825, 1078
EcoT38I	GRGCYC	2 cut(s)	197, 618
FaeI	CATG	4 cut(s)	116, 311, 551, 714
FalI	AAGNNNNNCTT	2 cut(s)	477, 509
FaqI	GGGAC	1 cut(s)	266
FatI	CATG	4 cut(s)	112, 307, 547, 710
FauI	CCCGC	1 cut(s)	109
FauNDI	CATATG	1 cut(s)	301
Fnu4HI	GCNGC	5 cut(s)	110, 135, 138, 569, 572
FokI	GGATG	9 cut(s)	89, 110, 163, 201, 259, 863, 923, 977, 1058
FriOI	GRGCYC	2 cut(s)	197, 618
Fsp4HI	GCNGC	5 cut(s)	110, 135, 138, 569, 572
FspBI	CTAG	2 cut(s)	68, 734
GlaI	GCGC	1 cut(s)	108
GluI	GCNGC	5 cut(s)	110, 135, 138, 569, 572
GsuI	CTGGAG	1 cut(s)	399
HaeII	RGCGCY	1 cut(s)	110
HaeIII	GGCC	2 cut(s)	195, 1062
HapII	CCGG	1 cut(s)	908
HhaI	GCGC	1 cut(s)	109
Hin1II	CATG	4 cut(s)	116, 311, 551, 714
Hin6I	GCGC	1 cut(s)	107
HinP1I	GCGC	1 cut(s)	107
HincII	GTYRAC	1 cut(s)	433
HindII	GTYRAC	1 cut(s)	433
HindIII	AAGCTT	1 cut(s)	470
HinfI	GANTC	1 cut(s)	412
HpaI	GTTAAC	1 cut(s)	433
HpaII	CCGG	1 cut(s)	908
HphI	GGTGA	1 cut(s)	671
Hpy166II	GTNNAC	3 cut(s)	160, 433, 598
Hpy188I	TCNGA	2 cut(s)	150, 382
Hpy188III	TCNNGA	3 cut(s)	416, 455, 1043
Hpy8I	GTNNAC	3 cut(s)	160, 433, 598
HpyAV	CCTTC	5 cut(s)	355, 387, 509, 629, 1060
HpyCH4III	ACNGT	2 cut(s)	519, 822
HpyCH4V	TGCA	4 cut(s)	112, 125, 307, 714
HpyF10VI	GCNNNNNNNGC	6 cut(s)	113, 122, 131, 143, 382, 622
HpyF3I	CTNAG	4 cut(s)	141, 362, 381, 456
Hsp92II	CATG	4 cut(s)	116, 311, 551, 714
HspAI	GCGC	1 cut(s)	107
KpnI	GGTACC	1 cut(s)	1053
KspAI	GTTAAC	1 cut(s)	433
Kzo9I	GATC	6 cut(s)	205, 451, 487, 1025, 1039, 1085
LmnI	GCTCC	3 cut(s)	361, 613, 621
Lsp1109I	GCAGC	4 cut(s)	96, 121, 124, 580
LweI	GCATC	2 cut(s)	672, 994
MaeI	CTAG	2 cut(s)	68, 734
MaeIII	GTNAC	2 cut(s)	659, 1070
MalI	GATC	6 cut(s)	207, 453, 489, 1027, 1041, 1087
MboI	GATC	6 cut(s)	205, 451, 487, 1025, 1039, 1085
MfeI	CAATTG	1 cut(s)	954
MflI	RGATCY	2 cut(s)	487, 1025
MhlI	GDGCHC	2 cut(s)	197, 618
MlsI	TGGCCA	1 cut(s)	1062
MluCI	AATT	5 cut(s)	269, 419, 782, 837, 954
MluNI	TGGCCA	1 cut(s)	1062
MlyI	GAGTC	1 cut(s)	406
Mox20I	TGGCCA	1 cut(s)	1062
MroXI	GAANNNNTTC	1 cut(s)	344
MscI	TGGCCA	1 cut(s)	1062
MseI	TTAA	3 cut(s)	17, 432, 521
Msp20I	TGGCCA	1 cut(s)	1062
MspI	CCGG	1 cut(s)	908
MspR9I	CCNGG	3 cut(s)	255, 827, 1080
MunI	CAATTG	1 cut(s)	954
Mva1269I	GAATGC	1 cut(s)	1112
MvaI	CCWGG	3 cut(s)	255, 827, 1080
MwoI	GCNNNNNNNGC	6 cut(s)	113, 122, 131, 143, 382, 622
NdeI	CATATG	1 cut(s)	301
NdeII	GATC	6 cut(s)	205, 451, 487, 1025, 1039, 1085
NlaIII	CATG	4 cut(s)	116, 311, 551, 714
NlaIV	GGNNCC	7 cut(s)	194, 195, 252, 441, 462, 600, 1051
NmuCI	GTSAC	1 cut(s)	659
NspI	RCATGY	2 cut(s)	116, 714
PaeI	GCATGC	1 cut(s)	116
PctI	GAATGC	1 cut(s)	1112
PdmI	GAANNNNTTC	1 cut(s)	344
PkrI	GCNGC	5 cut(s)	111, 136, 139, 570, 573
PleI	GAGTC	1 cut(s)	406
PpsI	GAGTC	1 cut(s)	406
PpuMI	RGGWCCY	1 cut(s)	460
Psp124BI	GAGCTC	1 cut(s)	618
Psp5II	RGGWCCY	1 cut(s)	460
Psp6I	CCWGG	3 cut(s)	253, 825, 1078
PspGI	CCWGG	3 cut(s)	253, 825, 1078
PspN4I	GGNNCC	7 cut(s)	194, 195, 252, 441, 462, 600, 1051
PspOMI	GGGCCC	1 cut(s)	193
PspPI	GGNCC	4 cut(s)	193, 194, 460, 598
PspPPI	RGGWCCY	1 cut(s)	460
PstNI	CAGNNNCTG	1 cut(s)	449
PsuI	RGATCY	2 cut(s)	487, 1025
RsaI	GTAC	3 cut(s)	22, 42, 1051
RsaNI	GTAC	3 cut(s)	21, 41, 1050
SacI	GAGCTC	1 cut(s)	618
SaqAI	TTAA	3 cut(s)	17, 432, 521
SatI	GCNGC	5 cut(s)	110, 135, 138, 569, 572
Sau3AI	GATC	6 cut(s)	205, 451, 487, 1025, 1039, 1085
Sau96I	GGNCC	4 cut(s)	193, 194, 460, 598
ScaI	AGTACT	1 cut(s)	22
SchI	GAGTC	1 cut(s)	406
ScrFI	CCNGG	3 cut(s)	255, 827, 1080
SduI	GDGCHC	2 cut(s)	197, 618
SfaNI	GCATC	2 cut(s)	672, 994
SinI	GGWCC	2 cut(s)	460, 598
SphI	GCATGC	1 cut(s)	116
Sse9I	AATT	5 cut(s)	269, 419, 782, 837, 954
SsiI	CCGC	4 cut(s)	116, 572, 611, 623
SspMI	CTAG	2 cut(s)	68, 734
SstI	GAGCTC	1 cut(s)	618
StyD4I	CCNGG	3 cut(s)	253, 825, 1078
TaaI	ACNGT	2 cut(s)	519, 822
TaqI	TCGA	2 cut(s)	534, 894
TasI	AATT	5 cut(s)	269, 419, 782, 837, 954
TatI	WGTACW	1 cut(s)	20
TauI	GCSGC	1 cut(s)	574
Tru1I	TTAA	3 cut(s)	17, 432, 521
Tru9I	TTAA	3 cut(s)	17, 432, 521
TscAI	CASTG	2 cut(s)	366, 705
TseFI	GTSAC	1 cut(s)	659
TseI	GCWGC	4 cut(s)	109, 134, 137, 568
Tsp45I	GTSAC	1 cut(s)	659
TspGWI	ACGGA	1 cut(s)	918
TspRI	CASTG	2 cut(s)	366, 705
VpaK11BI	GGWCC	2 cut(s)	460, 598
XagI	CCTNNNNNAGG	1 cut(s)	830
XapI	RAATTY	1 cut(s)	419
XceI	RCATGY	2 cut(s)	116, 714
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1105
XmnI	GAANNNNTTC	1 cut(s)	344
XspI	CTAG	2 cut(s)	68, 734
ZrmI	AGTACT	1 cut(s)	22

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.