Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003110.1

Orthogroup ID

OG0006193

Physical Location & Seq

Genomic Coordinates Forward (+)

64498 .. 66349

Gene Structure 1852 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003110.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

atgccagaccaagactccccaaaccccactgaatcccagctcaccgcccaagagcccgacccggacggcctctcctcctccgactccgagcccgactacgattccgacgagtcctccgtctacgaaggcggtaacggcggtaatggtgaagtcgacgaagcgcttaatttactccggccgggcgaggacataccggaggacgagaacactcccgatgtgaatgtgaagctgttcaaccaggtgttacaggggaagagagtgaggaggaggcaggaggaggaggacagggggtatgtgttttacgaggacctgtttgatttcccggaggacccagagaaatggcgggaggaggacttgaaggagctctggggtgatgcgcccttggatatgaccaaacccggttgggacccggtttgggctgatgaggaggagtgggagattgttaaggatgagattaaggccggcaatgacccgcccatcgctcccttttatgttccctaccggaagccttatccggccatacctgaagatcattatgacatttccaatcccaaggctgtgattgaagagttggataggattgaggagtttctcagatgggtcagctatgttttccctgacggcagctcgtatgagggcaccgtgtgggatgacttggctcatggcaaaggagtctacgttgctgagcagggactcgtcaggtatgaaggtgaatggcttcaaaacaacatggagggtcatggggttgttgaagttgacatacctgacatagagcctattccaggttccaagcttgaagcacagatgcgtgctgaagggcacataatatcaagagattatatgaccccggaagacaaagaatggttggagatggatattcaagacagcattgatctagcaggggggcggtctgaaattcctttttatgaaaaagatgaatggatcagacattttgggaggaaaccgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006605 GO:0006810 GO:0006886 GO:0006996 GO:0007275 GO:0008104 GO:0008150 GO:0008565 GO:0009507 GO:0009526 GO:0009528 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009657 GO:0009658 GO:0009706 GO:0009790 GO:0009791 GO:0009793 GO:0009941 GO:0009987 GO:0010154 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0017038 GO:0019866 GO:0022414 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0033036 GO:0033365 GO:0034357 GO:0034613 GO:0042170 GO:0042651 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055035 GO:0055085 GO:0061458 GO:0065002 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072596 GO:0072598

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MORN

Protein Analysis

322

Amino Acids

37.04

Weight (kDa)

4.15

Isoelectric Point (pI)

59.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006193)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22640 AT5G22640 AT5G22640
fragaria_vesca	FvH4_3g29910 FvH4_3g29910 FvH4_3g29910
malus_domestica	MD03G1134600.v1.1 MD11G1157100.v1.1
prunus_persica	Prupe.6G118900_v2.0.a1 Prupe.6G118900_v2.0.a1
pyrus_communis	pycom03g09060 pycom11g12730
rosa_chinensis	RchiOBHm_Chr5g0055251
rosa_laevigata	RLG00000034978
rosa_multiflora	Rmu_co8251283.1_g000001 Rmu_co8349015.1_g000001 Rmu_sc0003110.1_g000015 Rmu_sc0013362.1_g000001 Rmu_sc0014992.1_g000001
rosa_roxburghii	Rroxscaffold_1G00025050
rosa_rugosa	Rorug05G0292100 Rorug05G0292200
rosa_samantha	Rh5AG361900 Rh5BG373500 Rh5CG395200 Rh5DG386700
rosa_wichuraiana	Rw5G034030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	638
AccI	GTMKAC	3 cut(s)	120, 153, 675
AciI	CCGC	6 cut(s)	45, 129, 138, 343, 473, 907
AclWI	GGATC	1 cut(s)	950
AcoI	YGGCCR	2 cut(s)	176, 516
AcsI	RAATTY	1 cut(s)	915
AcuI	CTGAAG	2 cut(s)	546, 834
AdeI	CACNNNGTG	1 cut(s)	645
AfeI	AGCGCT	1 cut(s)	162
AfiI	CCNNNNNNNGG	2 cut(s)	415, 782
AgsI	TTSAA	7 cut(s)	235, 358, 566, 722, 752, 797, 881
AjnI	CCWGG	2 cut(s)	237, 781
AluBI	AGCT	6 cut(s)	40, 229, 364, 606, 627, 793
AluI	AGCT	6 cut(s)	40, 229, 364, 606, 627, 793
Alw21I	GWGCWC	1 cut(s)	366
AlwI	GGATC	1 cut(s)	950
Aor51HI	AGCGCT	1 cut(s)	162
AoxI	GGCC	4 cut(s)	67, 176, 459, 516
ApeKI	GCWGC	1 cut(s)	624
ApoI	RAATTY	1 cut(s)	915
Asp700I	GAANNNNTTC	2 cut(s)	230, 717
AspLEI	GCGC	2 cut(s)	163, 379
AspS9I	GGNCC	3 cut(s)	307, 328, 406
AsuC2I	CCSGG	6 cut(s)	62, 180, 323, 399, 410, 848
AsuHPI	GGTGA	4 cut(s)	34, 158, 383, 722
AvaII	GGWCC	3 cut(s)	307, 328, 406
BaeGI	GKGCMC	2 cut(s)	641, 822
BanI	GGYRCC	1 cut(s)	638
BanII	GRGCYC	3 cut(s)	57, 93, 366
BarI	GAAGNNNNNNTAC	2 cut(s)	744, 776
BbsI	GAAGAC	1 cut(s)	858
Bbv12I	GWGCWC	1 cut(s)	366
BbvI	GCAGC	1 cut(s)	636
BccI	CCATC	3 cut(s)	485, 591, 865
BceAI	ACGGC	3 cut(s)	82, 151, 637
BciT130I	CCWGG	2 cut(s)	239, 783
BcnI	CCSGG	6 cut(s)	62, 180, 323, 399, 410, 848
BfaI	CTAG	1 cut(s)	896
BfoI	RGCGCY	1 cut(s)	164
BisI	GCNGC	1 cut(s)	625
BlpI	GCTNAGC	1 cut(s)	684
BlsI	GCNGC	1 cut(s)	626
Bme1390I	CCNGG	8 cut(s)	62, 180, 239, 323, 399, 410, 783, 848
Bme18I	GGWCC	3 cut(s)	307, 328, 406
BmgT120I	GGNCC	3 cut(s)	307, 328, 406
BmiI	GGNNCC	5 cut(s)	330, 407, 408, 640, 787
BmrFI	CCNGG	8 cut(s)	62, 180, 239, 323, 399, 410, 783, 848
BmsI	GCATC	2 cut(s)	364, 795
BpiI	GAAGAC	1 cut(s)	858
Bpu1102I	GCTNAGC	1 cut(s)	684
BpuMI	CCSGG	6 cut(s)	62, 180, 323, 399, 410, 848
BsaJI	CCNNGG	3 cut(s)	381, 552, 846
BsaWI	WCCGGW	2 cut(s)	193, 501
BsaXI	ACNNNNNCTCC	7 cut(s)	29, 56, 86, 98, 128, 663, 693
Bsc4I	CCNNNNNNNGG	2 cut(s)	415, 782
Bse118I	RCCGGY	1 cut(s)	461
Bse3DI	GCAATG	1 cut(s)	472
BseBI	CCWGG	2 cut(s)	239, 783
BseDI	CCNNGG	3 cut(s)	381, 552, 846
BseGI	GGATG	2 cut(s)	454, 655
BseLI	CCNNNNNNNGG	2 cut(s)	415, 782
BseMI	GCAATG	1 cut(s)	472
BseMII	CTCAG	2 cut(s)	607, 675
BseSI	GKGCMC	2 cut(s)	641, 822
BseX3I	CGGCCG	1 cut(s)	176
BseXI	GCAGC	1 cut(s)	636
BseYI	CCCAGC	1 cut(s)	36
Bsh1285I	CGRYCG	1 cut(s)	179
BshFI	GGCC	4 cut(s)	69, 178, 461, 518
BshNI	GGYRCC	1 cut(s)	638
BsiEI	CGRYCG	1 cut(s)	179
BsiHKAI	GWGCWC	1 cut(s)	366
BslFI	GGGAC	2 cut(s)	419, 705
BslI	CCNNNNNNNGG	2 cut(s)	415, 782
BsmFI	GGGAC	2 cut(s)	419, 705
BsnI	GGCC	4 cut(s)	69, 178, 461, 518
Bsp1286I	GDGCHC	5 cut(s)	57, 93, 366, 641, 822
Bsp143I	GATC	3 cut(s)	529, 892, 942
Bsp1720I	GCTNAGC	1 cut(s)	684
BspACI	CCGC	6 cut(s)	45, 129, 138, 343, 473, 907
BspANI	GGCC	4 cut(s)	69, 178, 461, 518
BspCNI	CTCAG	2 cut(s)	606, 676
BspLI	GGNNCC	5 cut(s)	330, 407, 408, 640, 787
BspPI	GGATC	1 cut(s)	950
BspT107I	GGYRCC	1 cut(s)	638
BsrDI	GCAATG	1 cut(s)	472
BsrFI	RCCGGY	1 cut(s)	461
BssAI	RCCGGY	1 cut(s)	461
BssECI	CCNNGG	3 cut(s)	381, 552, 846
BssMI	GATC	3 cut(s)	529, 892, 942
BssT1I	CCWWGG	2 cut(s)	381, 552
Bst2UI	CCWGG	2 cut(s)	239, 783
Bst4CI	ACNGT	2 cut(s)	643, 966
Bst6I	CTCTTC	2 cut(s)	248, 561
BstC8I	GCNNGC	2 cut(s)	463, 810
BstDEI	CTNAG	2 cut(s)	593, 684
BstENI	CCTNNNNNAGG	1 cut(s)	780
BstF5I	GGATG	2 cut(s)	454, 655
BstH2I	RGCGCY	1 cut(s)	164
BstHHI	GCGC	2 cut(s)	163, 379
BstKTI	GATC	3 cut(s)	532, 895, 945
BstMBI	GATC	3 cut(s)	529, 892, 942
BstMCI	CGRYCG	1 cut(s)	179
BstMWI	GCNNNNNNNGC	1 cut(s)	135
BstNI	CCWGG	2 cut(s)	239, 783
BstSCI	CCNGG	8 cut(s)	60, 178, 237, 321, 397, 408, 781, 846
BstSLI	GKGCMC	2 cut(s)	641, 822
BstV1I	GCAGC	1 cut(s)	636
BstV2I	GAAGAC	1 cut(s)	858
BstXI	CCANNNNNNTGG	1 cut(s)	339
BstZI	CGGCCG	1 cut(s)	176
BsuRI	GGCC	4 cut(s)	69, 178, 461, 518
BtgZI	GCGATG	1 cut(s)	463
BtsCI	GGATG	2 cut(s)	454, 655
BtsIMutI	CAGTG	1 cut(s)	27
Cac8I	GCNNGC	2 cut(s)	463, 810
CfoI	GCGC	2 cut(s)	163, 379
Cfr10I	RCCGGY	1 cut(s)	461
Cfr13I	GGNCC	3 cut(s)	307, 328, 406
CsiI	ACCWGGT	1 cut(s)	237
CviAII	CATG	3 cut(s)	662, 730, 740
DdeI	CTNAG	2 cut(s)	593, 684
DpnI	GATC	3 cut(s)	531, 894, 944
DpnII	GATC	3 cut(s)	529, 892, 942
DraIII	CACNNNGTG	1 cut(s)	645
EaeI	YGGCCR	2 cut(s)	176, 516
EagI	CGGCCG	1 cut(s)	176
Eam1104I	CTCTTC	2 cut(s)	248, 561
EarI	CTCTTC	2 cut(s)	248, 561
Ecl136II	GAGCTC	1 cut(s)	364
EclXI	CGGCCG	1 cut(s)	176
Eco130I	CCWWGG	2 cut(s)	381, 552
Eco24I	GRGCYC	3 cut(s)	57, 93, 366
Eco47I	GGWCC	3 cut(s)	307, 328, 406
Eco47III	AGCGCT	1 cut(s)	162
Eco52I	CGGCCG	1 cut(s)	176
Eco53kI	GAGCTC	1 cut(s)	364
Eco57I	CTGAAG	2 cut(s)	546, 834
EcoICRI	GAGCTC	1 cut(s)	364
EcoNI	CCTNNNNNAGG	1 cut(s)	780
EcoO109I	RGGNCCY	3 cut(s)	307, 328, 406
EcoRII	CCWGG	2 cut(s)	237, 781
EcoT14I	CCWWGG	2 cut(s)	381, 552
EcoT38I	GRGCYC	3 cut(s)	57, 93, 366
ErhI	CCWWGG	2 cut(s)	381, 552
FaeI	CATG	3 cut(s)	665, 733, 743
FaqI	GGGAC	2 cut(s)	419, 705
FatI	CATG	3 cut(s)	661, 729, 739
FauI	CCCGC	2 cut(s)	336, 480
FblI	GTMKAC	3 cut(s)	120, 153, 675
Fnu4HI	GCNGC	1 cut(s)	625
FokI	GGATG	2 cut(s)	461, 662
FriOI	GRGCYC	3 cut(s)	57, 93, 366
Fsp4HI	GCNGC	1 cut(s)	625
FspBI	CTAG	1 cut(s)	896
GlaI	GCGC	2 cut(s)	162, 378
GluI	GCNGC	1 cut(s)	625
GsaI	CCCAGC	1 cut(s)	40
HaeII	RGCGCY	1 cut(s)	164
HaeIII	GGCC	4 cut(s)	69, 178, 461, 518
HhaI	GCGC	2 cut(s)	163, 379
Hin1II	CATG	3 cut(s)	665, 733, 743
Hin6I	GCGC	2 cut(s)	161, 377
HinP1I	GCGC	2 cut(s)	161, 377
HincII	GTYRAC	2 cut(s)	154, 757
HindII	GTYRAC	2 cut(s)	154, 757
HindIII	AAGCTT	1 cut(s)	791
HinfI	GANTC	7 cut(s)	14, 32, 83, 101, 110, 672, 693
HphI	GGTGA	4 cut(s)	34, 158, 383, 722
Hpy166II	GTNNAC	4 cut(s)	121, 154, 676, 757
Hpy188I	TCNGA	6 cut(s)	82, 88, 106, 596, 913, 947
Hpy188III	TCNNGA	3 cut(s)	212, 831, 881
Hpy8I	GTNNAC	4 cut(s)	121, 154, 676, 757
Hpy99I	CGWCG	2 cut(s)	110, 158
HpyAV	CCTTC	4 cut(s)	119, 352, 701, 809
HpyCH4III	ACNGT	2 cut(s)	643, 966
HpyCH4IV	ACGT	1 cut(s)	678
HpyF10VI	GCNNNNNNNGC	1 cut(s)	135
HpyF3I	CTNAG	2 cut(s)	593, 684
HpySE526I	ACGT	1 cut(s)	678
Hsp92II	CATG	3 cut(s)	665, 733, 743
HspAI	GCGC	2 cut(s)	161, 377
KflI	GGGWCCC	1 cut(s)	406
KroI	GCCGGC	1 cut(s)	461
KroNI	GCCGGC	1 cut(s)	463
Kzo9I	GATC	3 cut(s)	529, 892, 942
LmnI	GCTCC	2 cut(s)	361, 487
Lsp1109I	GCAGC	1 cut(s)	636
LweI	GCATC	2 cut(s)	364, 795
MabI	ACCWGGT	1 cut(s)	237
MaeI	CTAG	1 cut(s)	896
MaeII	ACGT	1 cut(s)	678
MaeIII	GTNAC	2 cut(s)	131, 243
MalI	GATC	3 cut(s)	531, 894, 944
MboI	GATC	3 cut(s)	529, 892, 942
MboII	GAAGA	4 cut(s)	265, 539, 578, 863
MhlI	GDGCHC	5 cut(s)	57, 93, 366, 641, 822
MluCI	AATT	2 cut(s)	166, 915
MlyI	GAGTC	5 cut(s)	8, 77, 119, 681, 687
MmeI	TCCRAC	4 cut(s)	105, 129, 552, 846
MroNI	GCCGGC	1 cut(s)	461
MroXI	GAANNNNTTC	2 cut(s)	230, 717
MseI	TTAA	3 cut(s)	165, 444, 456
MspR9I	CCNGG	8 cut(s)	62, 180, 239, 323, 399, 410, 783, 848
MvaI	CCWGG	2 cut(s)	239, 783
MwoI	GCNNNNNNNGC	1 cut(s)	135
NaeI	GCCGGC	1 cut(s)	463
NciI	CCSGG	6 cut(s)	62, 180, 323, 399, 410, 848
NdeII	GATC	3 cut(s)	529, 892, 942
NgoMIV	GCCGGC	1 cut(s)	461
NlaIII	CATG	3 cut(s)	665, 733, 743
NlaIV	GGNNCC	5 cut(s)	330, 407, 408, 640, 787
PcsI	WCGNNNNNNNCGW	2 cut(s)	105, 114
PdiI	GCCGGC	1 cut(s)	463
PdmI	GAANNNNTTC	2 cut(s)	230, 717
PfeI	GAWTC	2 cut(s)	32, 101
PfoI	TCCNGGA	1 cut(s)	321
PkrI	GCNGC	1 cut(s)	626
PleI	GAGTC	5 cut(s)	8, 77, 118, 680, 687
PpsI	GAGTC	5 cut(s)	8, 77, 118, 680, 687
PpuMI	RGGWCCY	3 cut(s)	307, 328, 406
Psp124BI	GAGCTC	1 cut(s)	366
Psp5II	RGGWCCY	3 cut(s)	307, 328, 406
Psp6I	CCWGG	2 cut(s)	237, 781
PspFI	CCCAGC	1 cut(s)	36
PspGI	CCWGG	2 cut(s)	237, 781
PspN4I	GGNNCC	5 cut(s)	330, 407, 408, 640, 787
PspPI	GGNCC	3 cut(s)	307, 328, 406
PspPPI	RGGWCCY	3 cut(s)	307, 328, 406
SacI	GAGCTC	1 cut(s)	366
SalI	GTCGAC	1 cut(s)	152
SaqAI	TTAA	3 cut(s)	165, 444, 456
SatI	GCNGC	1 cut(s)	625
Sau3AI	GATC	3 cut(s)	529, 892, 942
Sau96I	GGNCC	3 cut(s)	307, 328, 406
SchI	GAGTC	5 cut(s)	8, 77, 119, 681, 687
ScrFI	CCNGG	8 cut(s)	62, 180, 239, 323, 399, 410, 783, 848
SduI	GDGCHC	5 cut(s)	57, 93, 366, 641, 822
SexAI	ACCWGGT	1 cut(s)	237
SfaNI	GCATC	2 cut(s)	364, 795
SinI	GGWCC	3 cut(s)	307, 328, 406
Sse9I	AATT	2 cut(s)	166, 915
SsiI	CCGC	6 cut(s)	45, 129, 138, 343, 473, 907
SspMI	CTAG	1 cut(s)	896
SstI	GAGCTC	1 cut(s)	366
StyD4I	CCNGG	8 cut(s)	60, 178, 237, 321, 397, 408, 781, 846
StyI	CCWWGG	2 cut(s)	381, 552
TaaI	ACNGT	2 cut(s)	643, 966
TaiI	ACGT	1 cut(s)	681
TaqI	TCGA	1 cut(s)	153
TasI	AATT	2 cut(s)	166, 915
TfiI	GAWTC	2 cut(s)	32, 101
Tru1I	TTAA	3 cut(s)	165, 444, 456
Tru9I	TTAA	3 cut(s)	165, 444, 456
TscAI	CASTG	1 cut(s)	34
TseI	GCWGC	1 cut(s)	624
TspDTI	ATGAA	3 cut(s)	720, 942, 951
TspGWI	ACGGA	1 cut(s)	106
TspRI	CASTG	1 cut(s)	34
VpaK11BI	GGWCC	3 cut(s)	307, 328, 406
XagI	CCTNNNNNAGG	1 cut(s)	780
XapI	RAATTY	1 cut(s)	915
XmiI	GTMKAC	3 cut(s)	120, 153, 675
XmnI	GAANNNNTTC	2 cut(s)	230, 717
XspI	CTAG	1 cut(s)	896

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.