Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8349015.1

Orthogroup ID

OG0006193

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1028

Gene Structure 1028 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8349015.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ctgtgcctggaagaggtaattgaggatatggatgaggagttgaagatgagagagaaagaggaggagaagaatgtggaaacggtctcgccggatggagaagatacttctccattggctaaccaagatgagaaatcaattgaagaggatgaagaggaagaggaagaggaggatgaagatgaagatgatgctgtgccatcaagttttgggtctgtaagaggagatcaggatggtaccaaaaatggccagaagggtaacaaacctgggcgatctccattttccacatcctcattggcattcgcttcaagtagcctcgtctctggg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006605 GO:0006810 GO:0006886 GO:0006996 GO:0007275 GO:0008104 GO:0008150 GO:0008565 GO:0009507 GO:0009526 GO:0009528 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009657 GO:0009658 GO:0009706 GO:0009790 GO:0009791 GO:0009793 GO:0009941 GO:0009987 GO:0010154 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0017038 GO:0019866 GO:0022414 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0033036 GO:0033365 GO:0034357 GO:0034613 GO:0042170 GO:0042651 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055035 GO:0055085 GO:0061458 GO:0065002 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072596 GO:0072598

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MORN

Protein Analysis

107

Amino Acids

11.73

Weight (kDa)

4.05

Isoelectric Point (pI)

91.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006193)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22640 AT5G22640 AT5G22640
fragaria_vesca	FvH4_3g29910 FvH4_3g29910 FvH4_3g29910
malus_domestica	MD03G1134600.v1.1 MD11G1157100.v1.1
prunus_persica	Prupe.6G118900_v2.0.a1 Prupe.6G118900_v2.0.a1
pyrus_communis	pycom03g09060 pycom11g12730
rosa_chinensis	RchiOBHm_Chr5g0055251
rosa_laevigata	RLG00000034978
rosa_multiflora	Rmu_co8251283.1_g000001 Rmu_co8349015.1_g000001 Rmu_sc0003110.1_g000015 Rmu_sc0013362.1_g000001 Rmu_sc0014992.1_g000001
rosa_roxburghii	Rroxscaffold_1G00025050
rosa_rugosa	Rorug05G0292100 Rorug05G0292200
rosa_samantha	Rh5AG361900 Rh5BG373500 Rh5CG395200 Rh5DG386700
rosa_wichuraiana	Rw5G034030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	230
AccB1I	GGYRCC	1 cut(s)	230
AcoI	YGGCCR	1 cut(s)	241
AfaI	GTAC	1 cut(s)	232
AfiI	CCNNNNNNNGG	1 cut(s)	13
AgsI	TTSAA	3 cut(s)	43, 140, 303
AjnI	CCWGG	2 cut(s)	6, 259
Alw26I	GTCTC	1 cut(s)	88
AoxI	GGCC	1 cut(s)	241
Asp718I	GGTACC	1 cut(s)	230
BalI	TGGCCA	1 cut(s)	243
BanI	GGYRCC	1 cut(s)	230
BccI	CCATC	3 cut(s)	86, 202, 221
BciT130I	CCWGG	2 cut(s)	8, 261
BcoDI	GTCTC	1 cut(s)	88
Bme1390I	CCNGG	2 cut(s)	8, 261
BmiI	GGNNCC	1 cut(s)	232
BmrFI	CCNGG	2 cut(s)	8, 261
BmsI	GCATC	1 cut(s)	175
BsaI	GGTCTC	1 cut(s)	88
BsaJI	CCNNGG	1 cut(s)	260
Bsc4I	CCNNNNNNNGG	1 cut(s)	13
BseBI	CCWGG	2 cut(s)	8, 261
BseDI	CCNNGG	1 cut(s)	260
BseGI	GGATG	6 cut(s)	37, 97, 151, 175, 232, 281
BseLI	CCNNNNNNNGG	1 cut(s)	13
BseRI	GAGGAG	5 cut(s)	50, 74, 77, 179, 231
BshFI	GGCC	1 cut(s)	243
BshNI	GGYRCC	1 cut(s)	230
BsiSI	CCGG	1 cut(s)	89
BslI	CCNNNNNNNGG	1 cut(s)	13
BsmAI	GTCTC	1 cut(s)	88
BsmI	GAATGC	1 cut(s)	293
BsnI	GGCC	1 cut(s)	243
Bso31I	GGTCTC	1 cut(s)	88
Bsp143I	GATC	2 cut(s)	220, 266
BspANI	GGCC	1 cut(s)	243
BspLI	GGNNCC	1 cut(s)	232
BspT107I	GGYRCC	1 cut(s)	230
BspTNI	GGTCTC	1 cut(s)	88
BssECI	CCNNGG	1 cut(s)	260
BssMI	GATC	2 cut(s)	220, 266
Bst2UI	CCWGG	2 cut(s)	8, 261
Bst4CI	ACNGT	1 cut(s)	82
Bst6I	CTCTTC	5 cut(s)	6, 135, 144, 150, 156
BstENI	CCTNNNNNAGG	1 cut(s)	11
BstF5I	GGATG	6 cut(s)	37, 97, 151, 175, 232, 281
BstKTI	GATC	2 cut(s)	223, 269
BstMAI	GTCTC	1 cut(s)	88
BstMBI	GATC	2 cut(s)	220, 266
BstNI	CCWGG	2 cut(s)	8, 261
BstSCI	CCNGG	2 cut(s)	6, 259
BsuRI	GGCC	1 cut(s)	243
BtsCI	GGATG	6 cut(s)	37, 97, 151, 175, 232, 281
Csp6I	GTAC	1 cut(s)	231
CviJI	RGCY	3 cut(s)	116, 243, 309
CviKI_1	RGCY	3 cut(s)	116, 243, 309
CviQI	GTAC	1 cut(s)	231
DpnI	GATC	2 cut(s)	222, 268
DpnII	GATC	2 cut(s)	220, 266
EaeI	YGGCCR	1 cut(s)	241
Eam1104I	CTCTTC	5 cut(s)	6, 135, 144, 150, 156
EarI	CTCTTC	5 cut(s)	6, 135, 144, 150, 156
Eco31I	GGTCTC	1 cut(s)	88
EcoNI	CCTNNNNNAGG	1 cut(s)	11
EcoRII	CCWGG	2 cut(s)	6, 259
FaiI	YATR	1 cut(s)	29
FokI	GGATG	6 cut(s)	44, 104, 158, 182, 239, 268
HaeIII	GGCC	1 cut(s)	243
HapII	CCGG	1 cut(s)	89
HpaII	CCGG	1 cut(s)	89
Hpy188III	TCNNGA	1 cut(s)	224
HpyAV	CCTTC	1 cut(s)	241
HpyCH4III	ACNGT	1 cut(s)	82
KpnI	GGTACC	1 cut(s)	234
Kzo9I	GATC	2 cut(s)	220, 266
LpnPI	CCDG	7 cut(s)	20, 102, 209, 246, 257, 273, 303
LweI	GCATC	1 cut(s)	175
MaeIII	GTNAC	1 cut(s)	251
MalI	GATC	2 cut(s)	222, 268
MboI	GATC	2 cut(s)	220, 266
MfeI	CAATTG	1 cut(s)	135
MlsI	TGGCCA	1 cut(s)	243
MluCI	AATT	2 cut(s)	18, 135
MluNI	TGGCCA	1 cut(s)	243
Mox20I	TGGCCA	1 cut(s)	243
MscI	TGGCCA	1 cut(s)	243
Msp20I	TGGCCA	1 cut(s)	243
MspI	CCGG	1 cut(s)	89
MspR9I	CCNGG	2 cut(s)	8, 261
MunI	CAATTG	1 cut(s)	135
Mva1269I	GAATGC	1 cut(s)	293
MvaI	CCWGG	2 cut(s)	8, 261
NdeII	GATC	2 cut(s)	220, 266
NlaIV	GGNNCC	1 cut(s)	232
PctI	GAATGC	1 cut(s)	293
Psp6I	CCWGG	2 cut(s)	6, 259
PspGI	CCWGG	2 cut(s)	6, 259
PspN4I	GGNNCC	1 cut(s)	232
RsaI	GTAC	1 cut(s)	232
RsaNI	GTAC	1 cut(s)	231
Sau3AI	GATC	2 cut(s)	220, 266
ScrFI	CCNGG	2 cut(s)	8, 261
SetI	ASST	2 cut(s)	18, 262
SfaNI	GCATC	1 cut(s)	175
Sse9I	AATT	2 cut(s)	18, 135
StyD4I	CCNGG	2 cut(s)	6, 259
TaaI	ACNGT	1 cut(s)	82
TasI	AATT	2 cut(s)	18, 135
TspDTI	ATGAA	3 cut(s)	162, 186, 192
XagI	CCTNNNNNAGG	1 cut(s)	11
XcmI	CCANNNNNNNNNTGG	1 cut(s)	286

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.