pycom11g14260
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0003137
Physical Location & Seq
Forward (+)
14168572 .. 14172747
4176 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1095 bp
ATGGGTGCGGTTTCGAAGGAGGCTCAGCTTTCTATAGCTGCCTCTTCGATGTTTCCGGGGTTTAGGTTTTCACCGACCGACGAGGAATTGATTTCCTACTACCTTAAGAACAAGCTGGAGGGACCGGTGCCCGGGAAGAACGTGGAGGTCATCTCCGAGGTTGATATCTGCAATTTCGAGCCCTGGGACTTGCCAGCTAAATCTGTCATTCGATCGGAAAATGAGTGGTTCTTCTTTTCTCCACGAGGAAGAAAGTACCCAAATGGATCACAAAGTAGAAGGGCAACAGAATTCGGTTATTGGAAAGCCACAGGAAAGGAACGTAACGTAAAGTCAAGTTCTAACATTATTGGTACAAAGAGGACACTTGTGTTCCACATAGGTCGTGCACCAAAAGGGGAAAGGACAGAATGGATTATGCACGAGTACTGCGTAAATGATAAACCCCAGGATTCTATGGTTGTTTGCCGCCTCCGGAAGAACAGTGAGTTTCGTTTGAATGACACCACAAACCAAGGTTGTTCAAGTCGAACTCCTTTATCAACTATTCAAAATGATGGAAATGCCGTCTCTGAAATTGGTAATGACCAAGGGGATAAGGCAGTTGAATGCAATTCGAAGAAGTCTACTAGCAGTCATGATTCTCATTCTATTGAGCAAATTGATTCTGCATCCGACTCCTACCCAAAACCAGTAACAGATGCTACGCAGACAGACTCTAATGGGCACCAGAAGGGTTCTTATGATGAAGACTTGTATGCGGAGATACTGAACGATGATATAATCAAACTAGATGAATCTTCCGTGCCTGCTGCTCATATGATGCCAGTTGTTGCCAACAACTCAGATGCTGAACATCAATCTCAACAACATATGCAAGCCACTTTGTCGCAAGCAGTTCCTTTCCAAGGTACTGCAAACCGAAGAATCCATTTGAGAAAGAGAAAGGAAAAGTTTTGTGCAGAATCACAGAACTCTTCCAACTCAGAGCAATCACGAAAAGCTTCAGTGAATTGGATGGACGATCGACATATGTTGTTATATGTATTTTTTGTTTTTCTGGTACTGCTGGCTGTGTTTCTATCCAATTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001101 GO:0002376 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005886 GO:0006355 GO:0006508 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0008219 GO:0009314 GO:0009416 GO:0009626 GO:0009628 GO:0009648 GO:0009651 GO:0009719 GO:0009725 GO:0009739 GO:0009791 GO:0009845 GO:0009889 GO:0009891 GO:0009893 GO:0009909 GO:0009910 GO:0009937 GO:0009938 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010228 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0010648 GO:0010769 GO:0012501 GO:0012505 GO:0016020 GO:0019219 GO:0019222 GO:0019538 GO:0022414 GO:0022603 GO:0022604 GO:0023051 GO:0023057 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0033554 GO:0033619 GO:0033993 GO:0034050 GO:0034976 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0045595 GO:0045893 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048573 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051128 GO:0051171 GO:0051173 GO:0051239 GO:0051241 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0060284 GO:0061458 GO:0065007 GO:0071214 GO:0071470 GO:0071472 GO:0071704 GO:0071944 GO:0080090 GO:0090351 GO:0097159 GO:0104004 GO:0140110 GO:1901363 GO:1901564 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000024 GO:2000026 GO:2000039 GO:2000112 GO:2000241 GO:2000242 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

365

Amino Acids

40.97

Weight (kDa)

6.23

Isoelectric Point (pI)

51.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 19 - 144 2.6e-44 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 127, 726
AccI GTMKAC 1 cut(s) 626
AccIII TCCGGA 1 cut(s) 474
AciI CCGC 3 cut(s) 8, 469, 761
AclWI GGATC 1 cut(s) 274
AcsI RAATTY 1 cut(s) 290
AcuI CTGAAG 1 cut(s) 990
AfaI GTAC 5 cut(s) 257, 355, 428, 913, 1065
AfiI CCNNNNNNNGG 2 cut(s) 131, 908
AflII CTTAAG 1 cut(s) 104
AgeI ACCGGT 1 cut(s) 124
AgsI TTSAA 4 cut(s) 499, 525, 551, 608
AjnI CCWGG 2 cut(s) 182, 447
AluBI AGCT 5 cut(s) 28, 38, 115, 197, 1004
AluI AGCT 5 cut(s) 28, 38, 115, 197, 1004
Alw21I GWGCWC 1 cut(s) 391
Alw26I GTCTC 1 cut(s) 574
Alw44I GTGCAC 1 cut(s) 387
AlwI GGATC 1 cut(s) 274
AlwNI CAGNNNCTG 1 cut(s) 851
Ama87I CYCGRG 1 cut(s) 131
Aor13HI TCCGGA 1 cut(s) 474
ApaLI GTGCAC 1 cut(s) 387
ApeKI GCWGC 2 cut(s) 38, 812
ApoI RAATTY 1 cut(s) 290
AsiGI ACCGGT 1 cut(s) 124
Asp700I GAANNNNTTC 1 cut(s) 1003
AspS9I GGNCC 1 cut(s) 122
AsuC2I CCSGG 3 cut(s) 57, 132, 133
AsuHPI GGTGA 1 cut(s) 63
AsuII TTCGAA 2 cut(s) 14, 617
AvaI CYCGRG 1 cut(s) 131
AvaII GGWCC 1 cut(s) 122
BaeGI GKGCMC 3 cut(s) 132, 391, 729
BanI GGYRCC 2 cut(s) 127, 726
BanII GRGCYC 1 cut(s) 183
BauI CACGAG 2 cut(s) 243, 422
BbsI GAAGAC 1 cut(s) 756
Bbv12I GWGCWC 1 cut(s) 391
BbvI GCAGC 2 cut(s) 25, 799
BccI CCATC 2 cut(s) 551, 1012
BceAI ACGGC 1 cut(s) 551
BciT130I CCWGG 2 cut(s) 184, 449
BcnI CCSGG 3 cut(s) 57, 132, 133
BcoDI GTCTC 1 cut(s) 574
BfaI CTAG 2 cut(s) 630, 791
BfmI CTRYAG 1 cut(s) 33
BfrI CTTAAG 1 cut(s) 104
BisI GCNGC 3 cut(s) 39, 469, 813
BlpI GCTNAGC 1 cut(s) 24
BlsI GCNGC 3 cut(s) 40, 470, 814
BmcAI AGTACT 1 cut(s) 428
Bme1390I CCNGG 5 cut(s) 57, 132, 133, 184, 449
Bme18I GGWCC 1 cut(s) 122
BmeT110I CYCGRG 1 cut(s) 131
BmgT120I GGNCC 1 cut(s) 122
BmiI GGNNCC 3 cut(s) 123, 129, 728
BmrFI CCNGG 5 cut(s) 57, 132, 133, 184, 449
BmsI GCATC 4 cut(s) 680, 691, 813, 838
BpiI GAAGAC 1 cut(s) 756
BplI GAGNNNNNCTC 2 cut(s) 137, 169
BpmI CTGGAG 1 cut(s) 137
Bpu1102I GCTNAGC 1 cut(s) 24
Bpu14I TTCGAA 2 cut(s) 14, 617
BpuMI CCSGG 3 cut(s) 57, 132, 133
BsaJI CCNNGG 9 cut(s) 56, 131, 156, 182, 183, 447, 514, 589, 907
BsaWI WCCGGW 2 cut(s) 124, 474
Bsc4I CCNNNNNNNGG 2 cut(s) 131, 908
Bse118I RCCGGY 1 cut(s) 124
Bse1I ACTGG 2 cut(s) 692, 827
BseAI TCCGGA 1 cut(s) 474
BseBI CCWGG 2 cut(s) 184, 449
BseDI CCNNGG 9 cut(s) 56, 131, 156, 182, 183, 447, 514, 589, 907
BseGI GGATG 2 cut(s) 671, 1023
BseLI CCNNNNNNNGG 2 cut(s) 131, 908
BseMII CTCAG 3 cut(s) 38, 858, 999
BseNI ACTGG 2 cut(s) 692, 827
BseSI GKGCMC 3 cut(s) 132, 391, 729
BseXI GCAGC 2 cut(s) 25, 799
BsgI GTGCAG 1 cut(s) 981
Bsh1285I CGRYCG 3 cut(s) 78, 215, 1027
BshNI GGYRCC 2 cut(s) 127, 726
BshTI ACCGGT 1 cut(s) 124
BsiEI CGRYCG 3 cut(s) 78, 215, 1027
BsiHKAI GWGCWC 1 cut(s) 391
BsiHKCI CYCGRG 1 cut(s) 131
BsiSI CCGG 4 cut(s) 56, 125, 132, 475
BslFI GGGAC 2 cut(s) 135, 200
BslI CCNNNNNNNGG 2 cut(s) 131, 908
BsmAI GTCTC 1 cut(s) 574
BsmBI CGTCTC 1 cut(s) 574
BsmFI GGGAC 2 cut(s) 135, 200
BsmI GAATGC 1 cut(s) 614
BsoBI CYCGRG 1 cut(s) 131
Bsp119I TTCGAA 2 cut(s) 14, 617
Bsp1286I GDGCHC 4 cut(s) 132, 183, 391, 729
Bsp13I TCCGGA 1 cut(s) 474
Bsp143I GATC 3 cut(s) 212, 266, 1024
Bsp1720I GCTNAGC 1 cut(s) 24
BspACI CCGC 3 cut(s) 8, 469, 761
BspCNI CTCAG 3 cut(s) 37, 857, 998
BspEI TCCGGA 1 cut(s) 474
BspHI TCATGA 1 cut(s) 637
BspLI GGNNCC 3 cut(s) 123, 129, 728
BspPI GGATC 1 cut(s) 274
BspT104I TTCGAA 2 cut(s) 14, 617
BspT107I GGYRCC 2 cut(s) 127, 726
BspTI CTTAAG 1 cut(s) 104
BsrFI RCCGGY 1 cut(s) 124
BsrI ACTGG 2 cut(s) 692, 827
BssAI RCCGGY 1 cut(s) 124
BssECI CCNNGG 9 cut(s) 56, 131, 156, 182, 183, 447, 514, 589, 907
BssMI GATC 3 cut(s) 212, 266, 1024
BssSI CACGAG 2 cut(s) 243, 422
BssT1I CCWWGG 3 cut(s) 514, 589, 907
Bst2BI CACGAG 2 cut(s) 243, 422
Bst2UI CCWGG 2 cut(s) 184, 449
Bst4CI ACNGT 1 cut(s) 485
Bst6I CTCTTC 2 cut(s) 49, 982
BstAFI CTTAAG 1 cut(s) 104
BstBI TTCGAA 2 cut(s) 14, 617
BstC8I GCNNGC 5 cut(s) 195, 810, 879, 894, 1071
BstDEI CTNAG 3 cut(s) 24, 844, 985
BstENI CCTNNNNNAGG 1 cut(s) 906
BstF5I GGATG 2 cut(s) 671, 1023
BstKTI GATC 3 cut(s) 215, 269, 1027
BstMAI GTCTC 1 cut(s) 574
BstMBI GATC 3 cut(s) 212, 266, 1024
BstMCI CGRYCG 3 cut(s) 78, 215, 1027
BstNI CCWGG 2 cut(s) 184, 449
BstSCI CCNGG 5 cut(s) 55, 130, 131, 182, 447
BstSFI CTRYAG 1 cut(s) 33
BstSLI GKGCMC 3 cut(s) 132, 391, 729
BstV1I GCAGC 2 cut(s) 25, 799
BstV2I GAAGAC 1 cut(s) 756
BtsCI GGATG 2 cut(s) 671, 1023
BtsIMutI CAGTG 2 cut(s) 490, 1014
Cac8I GCNNGC 5 cut(s) 195, 810, 879, 894, 1071
CaiI CAGNNNCTG 1 cut(s) 851
CciI TCATGA 1 cut(s) 637
Cfr10I RCCGGY 1 cut(s) 124
Cfr13I GGNCC 1 cut(s) 122
Cfr9I CCCGGG 1 cut(s) 131
Csp6I GTAC 5 cut(s) 256, 354, 427, 912, 1064
CspAI ACCGGT 1 cut(s) 124
CviAII CATG 1 cut(s) 638
CviQI GTAC 5 cut(s) 256, 354, 427, 912, 1064
DdeI CTNAG 3 cut(s) 24, 844, 985
DpnI GATC 3 cut(s) 214, 268, 1026
DpnII GATC 3 cut(s) 212, 266, 1024
Eam1104I CTCTTC 2 cut(s) 49, 982
EarI CTCTTC 2 cut(s) 49, 982
Eco130I CCWWGG 3 cut(s) 514, 589, 907
Eco24I GRGCYC 1 cut(s) 183
Eco32I GATATC 1 cut(s) 166
Eco47I GGWCC 1 cut(s) 122
Eco57I CTGAAG 1 cut(s) 990
Eco88I CYCGRG 1 cut(s) 131
EcoNI CCTNNNNNAGG 1 cut(s) 906
EcoRI GAATTC 1 cut(s) 290
EcoRII CCWGG 2 cut(s) 182, 447
EcoRV GATATC 1 cut(s) 166
EcoT14I CCWWGG 3 cut(s) 514, 589, 907
EcoT38I GRGCYC 1 cut(s) 183
ErhI CCWWGG 3 cut(s) 514, 589, 907
Esp3I CGTCTC 1 cut(s) 574
FaeI CATG 1 cut(s) 641
FaqI GGGAC 2 cut(s) 135, 200
FatI CATG 1 cut(s) 637
FauNDI CATATG 3 cut(s) 819, 873, 1032
FblI GTMKAC 1 cut(s) 626
Fnu4HI GCNGC 3 cut(s) 39, 469, 813
FokI GGATG 2 cut(s) 658, 1030
FriOI GRGCYC 1 cut(s) 183
Fsp4HI GCNGC 3 cut(s) 39, 469, 813
FspBI CTAG 2 cut(s) 630, 791
GluI GCNGC 3 cut(s) 39, 469, 813
GsuI CTGGAG 1 cut(s) 137
HapII CCGG 4 cut(s) 56, 125, 132, 475
Hin1II CATG 1 cut(s) 641
HindIII AAGCTT 1 cut(s) 1002
HinfI GANTC 8 cut(s) 452, 641, 665, 677, 716, 797, 927, 965
HpaII CCGG 4 cut(s) 56, 125, 132, 475
HphI GGTGA 1 cut(s) 63
Hpy166II GTNNAC 2 cut(s) 389, 627
Hpy188I TCNGA 6 cut(s) 157, 217, 574, 676, 847, 988
Hpy188III TCNNGA 3 cut(s) 475, 638, 996
Hpy8I GTNNAC 2 cut(s) 389, 627
Hpy99I CGWCG 1 cut(s) 83
HpyAV CCTTC 3 cut(s) 10, 273, 727
HpyCH4III ACNGT 1 cut(s) 485
HpyCH4IV ACGT 3 cut(s) 141, 322, 327
HpyCH4V TGCA 8 cut(s) 171, 389, 421, 612, 671, 877, 917, 962
HpyF3I CTNAG 3 cut(s) 24, 844, 985
HpySE526I ACGT 3 cut(s) 141, 322, 327
Hsp92II CATG 1 cut(s) 641
Kpn2I TCCGGA 1 cut(s) 474
Kzo9I GATC 3 cut(s) 212, 266, 1024
Lsp1109I GCAGC 2 cut(s) 25, 799
LweI GCATC 4 cut(s) 680, 691, 813, 838
MaeI CTAG 2 cut(s) 630, 791
MaeII ACGT 3 cut(s) 141, 322, 327
MaeIII GTNAC 2 cut(s) 323, 694
MalI GATC 3 cut(s) 214, 268, 1026
MboI GATC 3 cut(s) 212, 266, 1024
MhlI GDGCHC 4 cut(s) 132, 183, 391, 729
MluCI AATT 8 cut(s) 86, 172, 290, 576, 613, 660, 1012, 1087
MlyI GAGTC 2 cut(s) 671, 710
MmeI TCCRAC 2 cut(s) 699, 1005
MnlI CCTC 9 cut(s) 13, 52, 76, 112, 139, 151, 239, 354, 482
MroI TCCGGA 1 cut(s) 474
MroXI GAANNNNTTC 1 cut(s) 1003
MseI TTAA 1 cut(s) 105
MspCI CTTAAG 1 cut(s) 104
MspI CCGG 4 cut(s) 56, 125, 132, 475
MspR9I CCNGG 5 cut(s) 57, 132, 133, 184, 449
Mva1269I GAATGC 1 cut(s) 614
MvaI CCWGG 2 cut(s) 184, 449
NciI CCSGG 3 cut(s) 57, 132, 133
NdeI CATATG 3 cut(s) 819, 873, 1032
NdeII GATC 3 cut(s) 212, 266, 1024
NlaIII CATG 1 cut(s) 641
NlaIV GGNNCC 3 cut(s) 123, 129, 728
NspV TTCGAA 2 cut(s) 14, 617
PagI TCATGA 1 cut(s) 637
PasI CCCWGGG 1 cut(s) 183
PcsI WCGNNNNNNNCGW 1 cut(s) 429
PctI GAATGC 1 cut(s) 614
PdmI GAANNNNTTC 1 cut(s) 1003
PfeI GAWTC 6 cut(s) 452, 641, 665, 797, 927, 965
PinAI ACCGGT 1 cut(s) 124
PkrI GCNGC 3 cut(s) 40, 470, 814
Ple19I CGATCG 2 cut(s) 215, 1027
PleI GAGTC 2 cut(s) 671, 710
PpsI GAGTC 2 cut(s) 671, 710
Psp6I CCWGG 2 cut(s) 182, 447
PspGI CCWGG 2 cut(s) 182, 447
PspN4I GGNNCC 3 cut(s) 123, 129, 728
PspPI GGNCC 1 cut(s) 122
PstNI CAGNNNCTG 1 cut(s) 851
PvuI CGATCG 2 cut(s) 215, 1027
RsaI GTAC 5 cut(s) 257, 355, 428, 913, 1065
RsaNI GTAC 5 cut(s) 256, 354, 427, 912, 1064
SaqAI TTAA 1 cut(s) 105
SatI GCNGC 3 cut(s) 39, 469, 813
Sau3AI GATC 3 cut(s) 212, 266, 1024
Sau96I GGNCC 1 cut(s) 122
ScaI AGTACT 1 cut(s) 428
SchI GAGTC 2 cut(s) 671, 710
ScrFI CCNGG 5 cut(s) 57, 132, 133, 184, 449
SduI GDGCHC 4 cut(s) 132, 183, 391, 729
SfaNI GCATC 4 cut(s) 680, 691, 813, 838
SfcI CTRYAG 1 cut(s) 33
SfuI TTCGAA 2 cut(s) 14, 617
SinI GGWCC 1 cut(s) 122
SmaI CCCGGG 1 cut(s) 133
SmlI CTYRAG 1 cut(s) 104
SmoI CTYRAG 1 cut(s) 104
Sse9I AATT 8 cut(s) 86, 172, 290, 576, 613, 660, 1012, 1087
SsiI CCGC 3 cut(s) 8, 469, 761
SspMI CTAG 2 cut(s) 630, 791
StyD4I CCNGG 5 cut(s) 55, 130, 131, 182, 447
StyI CCWWGG 3 cut(s) 514, 589, 907
TaaI ACNGT 1 cut(s) 485
TaiI ACGT 3 cut(s) 144, 325, 330
TaqI TCGA 7 cut(s) 14, 47, 177, 211, 529, 617, 1027
TaqII GACCGA 1 cut(s) 92
TasI AATT 8 cut(s) 86, 172, 290, 576, 613, 660, 1012, 1087
TatI WGTACW 1 cut(s) 426
TauI GCSGC 1 cut(s) 471
TfiI GAWTC 6 cut(s) 452, 641, 665, 797, 927, 965
Tru1I TTAA 1 cut(s) 105
Tru9I TTAA 1 cut(s) 105
TscAI CASTG 2 cut(s) 490, 1014
TseI GCWGC 2 cut(s) 38, 812
TspDTI ATGAA 2 cut(s) 762, 810
TspGWI ACGGA 1 cut(s) 793
TspMI CCCGGG 1 cut(s) 131
TspRI CASTG 2 cut(s) 490, 1014
Vha464I CTTAAG 1 cut(s) 104
VneI GTGCAC 1 cut(s) 387
VpaK11BI GGWCC 1 cut(s) 122
XagI CCTNNNNNAGG 1 cut(s) 906
XapI RAATTY 1 cut(s) 290
XmaI CCCGGG 1 cut(s) 131
XmiI GTMKAC 1 cut(s) 626
XmnI GAANNNNTTC 1 cut(s) 1003
XspI CTAG 2 cut(s) 630, 791
ZrmI AGTACT 1 cut(s) 428
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.