pycom11g15120

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0005730
Physical Location & Seq
Reverse (-)
15655148 .. 15657252
2105 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 693 bp
ATGGGAAGTTTCCTGTTACAAATGTGGTTCAATGGGACATACTGGTATGGCCCTTCCTTTTCTTACTTTTGTCTAAGAAAGGGGATTCTGTACATGCAGGCATGCGTAAGCTTACGTGGTGGGGAAACCACTGGTTTTGGTTCGCCTCGGTTATGCTACAAGTGTGGTGAAGGTGGTCATATTGCTCGTGAATGTGCAAGTTTGGTCAATGTTCACAAAAGATTTGGGGAATCATCTAATTATTCTACTCCAGTTTTGAAACGCCATAAGGAAAAGAGAGACTACACGGGATTCAAGTCTGCTCCTCATGACCTAAATAAGGTCCATAAAAGGAAACAGACCCAATTTGAAGAAAGAGTTTTTACAACACCACAAAAGGCAAAACATAGATGTGGCTGGATAATGGATGATCCAGGGGACTTTTCCCCTAGAAAAGGCAAAAAGAACAATAGGAAGTCTCCGGTAACACCATCTAATCGGGGTCATAGGGTTCCTAGTTTAACTGCAGGTGGTCATGCTTCAAGTTCTAGATCCTCTAAAAAGATTTGGGAGGATTCCAAAAGCCCCATCTCAAAAGGGTCGTCGAAGTCTTTTCAGCACGGATATTCTGCATCGAGGTTTAACAACTCTAATGGTGGTGGATATAGAAGAAATTATGATTGGATAGGTGATGAATATAATGGGCATTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-CCHC

Protein Analysis

231

Amino Acids

26.08

Weight (kDa)

9.94

Isoelectric Point (pI)

55.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCHC PF00098 51 - 66 1.4e-06 Zinc knuckle
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 497
Acc36I ACCTGC 1 cut(s) 497
AclWI GGATC 2 cut(s) 404, 525
AfaI GTAC 1 cut(s) 92
AfiI CCNNNNNNNGG 2 cut(s) 319, 434
AgsI TTSAA 5 cut(s) 31, 259, 295, 350, 522
AjnI CCWGG 1 cut(s) 412
AjuI GAANNNNNNNTTGG 2 cut(s) 643, 675
AluBI AGCT 1 cut(s) 111
AluI AGCT 1 cut(s) 111
Alw26I GTCTC 2 cut(s) 273, 462
AlwI GGATC 2 cut(s) 404, 525
AoxI GGCC 1 cut(s) 49
ArsI GACNNNNNNTTYG 2 cut(s) 566, 598
AspS9I GGNCC 2 cut(s) 50, 322
AsuHPI GGTGA 2 cut(s) 179, 680
AvaII GGWCC 1 cut(s) 322
BauI CACGAG 1 cut(s) 186
BccI CCATC 2 cut(s) 478, 575
BciT130I CCWGG 1 cut(s) 414
BcoDI GTCTC 2 cut(s) 273, 462
BfaI CTAG 3 cut(s) 429, 495, 528
BfmI CTRYAG 1 cut(s) 504
BfuAI ACCTGC 1 cut(s) 497
Bme1390I CCNGG 1 cut(s) 414
Bme18I GGWCC 1 cut(s) 322
BmgT120I GGNCC 2 cut(s) 50, 322
BmiI GGNNCC 1 cut(s) 492
BmrFI CCNGG 1 cut(s) 414
BmsI GCATC 1 cut(s) 620
BpmI CTGGAG 1 cut(s) 234
BsaAI YACGTR 1 cut(s) 116
BsaJI CCNNGG 2 cut(s) 146, 413
BsaWI WCCGGW 1 cut(s) 460
Bsc4I CCNNNNNNNGG 2 cut(s) 319, 434
Bse1I ACTGG 3 cut(s) 47, 136, 251
BseBI CCWGG 1 cut(s) 414
BseDI CCNNGG 2 cut(s) 146, 413
BseGI GGATG 1 cut(s) 412
BseLI CCNNNNNNNGG 2 cut(s) 319, 434
BseNI ACTGG 3 cut(s) 47, 136, 251
BseRI GAGGAG 1 cut(s) 294
BshFI GGCC 1 cut(s) 51
BsiSI CCGG 1 cut(s) 461
BslFI GGGAC 2 cut(s) 49, 431
BslI CCNNNNNNNGG 2 cut(s) 319, 434
BsmAI GTCTC 2 cut(s) 273, 462
BsmFI GGGAC 2 cut(s) 49, 431
BsnI GGCC 1 cut(s) 51
Bsp1407I TGTACA 1 cut(s) 90
Bsp143I GATC 2 cut(s) 409, 530
BspANI GGCC 1 cut(s) 51
BspHI TCATGA 1 cut(s) 307
BspLI GGNNCC 1 cut(s) 492
BspMAI CTGCAG 1 cut(s) 508
BspMI ACCTGC 1 cut(s) 497
BspPI GGATC 2 cut(s) 404, 525
BsrGI TGTACA 1 cut(s) 90
BsrI ACTGG 3 cut(s) 47, 136, 251
BssECI CCNNGG 2 cut(s) 146, 413
BssMI GATC 2 cut(s) 409, 530
BssSI CACGAG 1 cut(s) 186
Bst2BI CACGAG 1 cut(s) 186
Bst2UI CCWGG 1 cut(s) 414
BstAUI TGTACA 1 cut(s) 90
BstBAI YACGTR 1 cut(s) 116
BstC8I GCNNGC 2 cut(s) 99, 103
BstDEI CTNAG 1 cut(s) 74
BstENI CCTNNNNNAGG 2 cut(s) 317, 432
BstF5I GGATG 1 cut(s) 412
BstKTI GATC 2 cut(s) 412, 533
BstMAI GTCTC 2 cut(s) 273, 462
BstMBI GATC 2 cut(s) 409, 530
BstNI CCWGG 1 cut(s) 414
BstNSI RCATGY 2 cut(s) 97, 105
BstSCI CCNGG 1 cut(s) 412
BstSFI CTRYAG 1 cut(s) 504
BstX2I RGATCY 1 cut(s) 530
BstYI RGATCY 1 cut(s) 530
BsuRI GGCC 1 cut(s) 51
BtsCI GGATG 1 cut(s) 412
BtsIMutI CAGTG 1 cut(s) 129
BveI ACCTGC 1 cut(s) 497
Cac8I GCNNGC 2 cut(s) 99, 103
CciI TCATGA 1 cut(s) 307
Cfr13I GGNCC 2 cut(s) 50, 322
Csp6I GTAC 1 cut(s) 91
CspCI CAANNNNNGTGG 2 cut(s) 118, 153
CviAII CATG 4 cut(s) 94, 102, 308, 515
CviJI RGCY 4 cut(s) 51, 111, 396, 564
CviKI_1 RGCY 4 cut(s) 51, 111, 396, 564
CviQI GTAC 1 cut(s) 91
DdeI CTNAG 1 cut(s) 74
DpnI GATC 2 cut(s) 411, 532
DpnII GATC 2 cut(s) 409, 530
Eco47I GGWCC 1 cut(s) 322
EcoNI CCTNNNNNAGG 2 cut(s) 317, 432
EcoRII CCWGG 1 cut(s) 412
FaeI CATG 4 cut(s) 97, 105, 311, 518
FaqI GGGAC 2 cut(s) 49, 431
FatI CATG 4 cut(s) 93, 101, 307, 514
FokI GGATG 1 cut(s) 419
FspBI CTAG 3 cut(s) 429, 495, 528
GsuI CTGGAG 1 cut(s) 234
HaeIII GGCC 1 cut(s) 51
HapII CCGG 1 cut(s) 461
Hin1II CATG 4 cut(s) 97, 105, 311, 518
HindIII AAGCTT 1 cut(s) 109
HinfI GANTC 4 cut(s) 85, 230, 291, 554
HpaII CCGG 1 cut(s) 461
HphI GGTGA 2 cut(s) 179, 680
Hpy166II GTNNAC 1 cut(s) 214
Hpy188III TCNNGA 3 cut(s) 188, 308, 528
Hpy8I GTNNAC 1 cut(s) 214
Hpy99I CGWCG 1 cut(s) 586
HpyAV CCTTC 2 cut(s) 63, 164
HpyCH4IV ACGT 1 cut(s) 115
HpyCH4V TGCA 4 cut(s) 97, 197, 506, 611
HpyF3I CTNAG 1 cut(s) 74
HpySE526I ACGT 1 cut(s) 115
Hsp92II CATG 4 cut(s) 97, 105, 311, 518
Kzo9I GATC 2 cut(s) 409, 530
LmnI GCTCC 1 cut(s) 307
LweI GCATC 1 cut(s) 620
MaeI CTAG 3 cut(s) 429, 495, 528
MaeII ACGT 1 cut(s) 115
MaeIII GTNAC 2 cut(s) 15, 463
MalI GATC 2 cut(s) 411, 532
MboI GATC 2 cut(s) 409, 530
MboII GAAGA 2 cut(s) 362, 660
MflI RGATCY 1 cut(s) 530
MluCI AATT 3 cut(s) 238, 344, 652
MnlI CCTC 5 cut(s) 156, 315, 544, 544, 609
MseI TTAA 2 cut(s) 500, 621
MslI CAYNNNNRTG 1 cut(s) 390
MspI CCGG 1 cut(s) 461
MspR9I CCNGG 1 cut(s) 414
MvaI CCWGG 1 cut(s) 414
NdeII GATC 2 cut(s) 409, 530
NlaIII CATG 4 cut(s) 97, 105, 311, 518
NlaIV GGNNCC 1 cut(s) 492
NspI RCATGY 2 cut(s) 97, 105
PaeI GCATGC 1 cut(s) 105
PagI TCATGA 1 cut(s) 307
PaqCI CACCTGC 1 cut(s) 497
PfeI GAWTC 4 cut(s) 85, 230, 291, 554
Ppu21I YACGTR 1 cut(s) 116
Psp6I CCWGG 1 cut(s) 412
PspGI CCWGG 1 cut(s) 412
PspN4I GGNNCC 1 cut(s) 492
PspPI GGNCC 2 cut(s) 50, 322
PstI CTGCAG 1 cut(s) 508
PsuI RGATCY 1 cut(s) 530
RsaI GTAC 1 cut(s) 92
RsaNI GTAC 1 cut(s) 91
RseI CAYNNNNRTG 1 cut(s) 390
SaqAI TTAA 2 cut(s) 500, 621
Sau3AI GATC 2 cut(s) 409, 530
Sau96I GGNCC 2 cut(s) 50, 322
ScrFI CCNGG 1 cut(s) 414
SetI ASST 8 cut(s) 113, 118, 175, 315, 324, 511, 620, 670
SfaNI GCATC 1 cut(s) 620
SfcI CTRYAG 1 cut(s) 504
SinI GGWCC 1 cut(s) 322
SmiMI CAYNNNNRTG 1 cut(s) 390
SphI GCATGC 1 cut(s) 105
Sse9I AATT 3 cut(s) 238, 344, 652
SspMI CTAG 3 cut(s) 429, 495, 528
StyD4I CCNGG 1 cut(s) 412
TaiI ACGT 1 cut(s) 118
TaqI TCGA 2 cut(s) 584, 614
TasI AATT 3 cut(s) 238, 344, 652
TatI WGTACW 1 cut(s) 90
TfiI GAWTC 4 cut(s) 85, 230, 291, 554
Tru1I TTAA 2 cut(s) 500, 621
Tru9I TTAA 2 cut(s) 500, 621
TscAI CASTG 1 cut(s) 136
TspDTI ATGAA 1 cut(s) 687
TspGWI ACGGA 1 cut(s) 615
TspRI CASTG 1 cut(s) 136
VpaK11BI GGWCC 1 cut(s) 322
XagI CCTNNNNNAGG 2 cut(s) 317, 432
XbaI TCTAGA 1 cut(s) 527
XceI RCATGY 2 cut(s) 97, 105
XspI CTAG 3 cut(s) 429, 495, 528
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.